Wall clock time and date at job start Fri Apr 10 2020 22:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00306 * 2 1 4 4 H 1.48506 * 109.46603 * 269.99285 * 3 2 1 5 5 H 1.48490 * 109.47091 * 29.99260 * 3 2 1 6 6 H 1.48499 * 109.47136 * 149.99867 * 3 2 1 7 7 C 1.38953 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00389 * 199.09768 * 7 2 1 9 9 N 1.37104 * 119.99692 * 19.09463 * 7 2 1 10 10 C 1.34773 * 120.00023 * 42.83880 * 9 7 2 11 11 O 1.21297 * 119.99920 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99932 * 179.97438 * 10 9 7 13 13 C 1.50701 * 109.47020 * 179.97438 * 12 10 9 14 14 C 1.38545 * 126.21615 * 264.99934 * 13 12 10 15 15 N 1.31484 * 109.00711 * 180.02562 * 14 13 12 16 16 N 1.40049 * 108.91178 * 359.97438 * 15 14 13 17 17 C 1.36542 * 132.42596 * 180.02562 * 16 15 14 18 18 C 1.34929 * 120.65426 * 180.02562 * 17 16 15 19 19 C 1.40476 * 120.43338 * 359.96921 * 18 17 16 20 20 C 1.36062 * 119.58930 * 0.02562 * 19 18 17 21 21 C 1.37119 * 107.44717 * 0.02562 * 16 15 14 22 22 C 1.46500 * 119.99935 * 222.83562 * 9 7 2 23 23 C 1.54267 * 110.03174 * 59.59667 * 22 9 7 24 24 C 1.54972 * 104.15836 * 217.13826 * 23 22 9 25 25 C 1.54887 * 102.77932 * 37.88653 * 24 23 22 26 26 C 1.53880 * 110.03170 * 302.38282 * 22 9 7 27 27 H 0.97005 * 119.99740 * 354.76888 * 1 2 3 28 28 H 1.09005 * 109.46881 * 59.99904 * 12 10 9 29 29 H 1.08997 * 109.47535 * 299.99933 * 12 10 9 30 30 H 1.07996 * 125.49647 * 359.97438 * 14 13 12 31 31 H 1.07992 * 119.67372 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.78681 * 179.69713 * 18 17 16 33 33 H 1.08003 * 120.20566 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.38526 * 180.02562 * 20 19 18 35 35 H 1.08993 * 110.01549 * 180.98788 * 22 9 7 36 36 H 1.09005 * 110.48869 * 335.78239 * 23 22 9 37 37 H 1.08992 * 110.48652 * 98.42692 * 23 22 9 38 38 H 1.08998 * 110.71766 * 279.57083 * 24 23 22 39 39 H 1.09003 * 110.92375 * 156.29808 * 24 23 22 40 40 H 1.08998 * 110.48957 * 203.40617 * 25 24 23 41 41 H 1.09000 * 110.59761 * 80.81753 * 25 24 23 42 42 H 1.09002 * 110.02709 * 238.56736 * 26 22 9 43 43 H 1.08996 * 110.03202 * 359.94412 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4958 2.0462 -1.4002 5 1 1.4456 2.6527 0.6998 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0442 -1.2291 0.3065 9 7 1.3798 -2.3582 -0.3874 10 6 0.5747 -2.3566 -1.4682 11 8 0.4062 -1.3335 -2.0975 12 6 -0.1162 -3.6261 -1.8949 13 6 -0.9510 -3.3562 -3.1202 14 6 -2.3015 -3.0478 -3.1389 15 7 -2.6852 -2.8797 -4.3853 16 7 -1.5846 -3.0747 -5.2292 17 6 -1.4429 -3.0182 -6.5860 18 6 -0.2460 -3.2531 -7.1630 19 6 0.8759 -3.5595 -6.3751 20 6 0.7503 -3.6193 -5.0216 21 6 -0.5061 -3.3717 -4.4363 22 6 1.5829 -3.5939 0.3730 23 6 1.1280 -3.3963 1.8337 24 6 2.1572 -4.2045 2.6639 25 6 3.4851 -3.9448 1.9101 26 6 3.0808 -3.9428 0.4214 27 1 -0.4850 0.8366 0.0766 28 1 -0.7589 -3.9787 -1.0882 29 1 0.6301 -4.3868 -2.1237 30 1 -2.9369 -2.9604 -2.2700 31 1 -2.2973 -2.7841 -7.2036 32 1 -0.1508 -3.2095 -8.2380 33 1 1.8321 -3.7472 -6.8409 34 1 1.6044 -3.8533 -4.4035 35 1 1.0240 -4.4098 -0.0850 36 1 1.1636 -2.3411 2.1051 37 1 0.1236 -3.7944 1.9777 38 1 1.9100 -5.2661 2.6565 39 1 2.2134 -3.8296 3.6859 40 1 4.1998 -4.7430 2.1102 41 1 3.9040 -2.9791 2.1929 42 1 3.2487 -4.9286 -0.0124 43 1 3.6565 -3.1933 -0.1217 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592598310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:54 Heat of formation + Delta-G solvation = 79.355203 kcal Electronic energy + Delta-G solvation = -26467.672557 eV Core-core repulsion = 22901.109645 eV Total energy + Delta-G solvation = -3566.562912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62350 -38.73205 -37.04086 -36.46465 -33.42354 -32.82541 -31.54009 -30.37252 -29.98564 -28.01439 -26.80631 -26.42855 -24.10174 -23.49030 -22.22219 -20.67385 -20.04875 -19.68633 -18.86024 -16.81456 -16.47355 -16.24297 -15.84049 -15.67366 -15.12217 -14.84596 -14.53672 -14.42135 -14.13334 -13.54659 -13.40176 -12.99839 -12.73454 -12.61625 -12.15990 -12.07558 -11.53155 -11.45080 -11.38890 -11.18625 -10.95205 -10.75849 -10.61078 -10.57004 -10.42971 -10.35697 -10.23741 -10.10261 -10.06191 -9.98174 -9.69648 -8.98325 -8.63044 -7.88145 -7.09441 -6.90336 -5.99474 -3.70825 1.03713 1.41138 2.61472 3.13291 3.36170 3.42580 3.46858 3.67617 4.32300 4.49381 4.52890 4.88782 4.96639 5.08358 5.11752 5.24951 5.29278 5.30160 5.44279 5.56367 5.66121 5.77082 5.82316 5.88417 5.98611 6.12445 6.13630 6.14704 6.19093 6.26979 6.28083 6.34862 6.37967 6.48575 6.53447 6.63819 6.66543 6.68523 6.85643 6.97469 7.04072 7.22864 7.27867 7.75132 7.94498 8.41372 9.21364 9.35570 9.83226 10.49475 11.09862 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.004838 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.242328 B = 5786.301517 C = 6648.222123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.074 3.926 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.340 4.340 8 H 0.075 0.925 9 N -0.453 5.453 10 C 0.477 3.523 11 O -0.526 6.526 12 C -0.057 4.057 13 C -0.195 4.195 14 C 0.091 3.909 15 N -0.328 5.328 16 N -0.279 5.279 17 C 0.107 3.893 18 C -0.171 4.171 19 C -0.103 4.103 20 C -0.091 4.091 21 C 0.106 3.894 22 C 0.130 3.870 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.131 4.131 27 H 0.260 0.740 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.187 0.813 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -11.369 -5.918 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.093 0.907 9 N -0.176 5.176 10 C 0.263 3.737 11 O -0.402 6.402 12 C -0.099 4.099 13 C -0.206 4.206 14 C -0.085 4.085 15 N -0.152 5.152 16 N -0.046 5.046 17 C -0.018 4.018 18 C -0.193 4.193 19 C -0.126 4.126 20 C -0.111 4.111 21 C -0.012 4.012 22 C 0.025 3.975 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.169 4.169 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.204 0.796 31 H 0.178 0.822 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.133 -10.399 -7.004 12.538 hybrid contribution 0.974 0.786 0.662 1.416 sum 1.107 -9.613 -6.341 11.569 Atomic orbital electron populations 1.69822 1.06404 1.26968 1.43261 1.25153 0.94677 0.99014 0.94777 0.86353 0.79387 0.82975 0.78115 1.20657 1.21552 1.20056 1.18763 0.94777 0.84121 1.49051 0.90692 1.43395 1.44433 1.07172 1.22567 1.19851 0.83245 0.88899 0.81670 1.90535 1.62027 1.33558 1.54110 1.19965 0.97651 0.98449 0.93827 1.19479 0.94150 1.14956 0.92047 1.23590 0.95177 0.95036 0.94699 1.77761 1.05728 1.31031 1.00691 1.46054 1.08289 1.45027 1.05262 1.21326 0.99748 1.00198 0.80546 1.20694 0.91590 1.06165 1.00846 1.21013 0.98935 0.99282 0.93326 1.20618 0.95040 1.00361 0.95072 1.19221 0.88738 1.01824 0.91423 1.21674 0.94358 0.88907 0.92581 1.22662 0.96758 1.02193 0.94739 1.22452 0.95974 0.99175 0.98478 1.22251 0.96776 1.00817 0.95635 1.22459 0.97707 1.00398 0.96380 0.92941 0.89998 0.90672 0.79588 0.82195 0.83488 0.84711 0.83972 0.91546 0.89141 0.93049 0.92575 0.92454 0.93028 0.91664 0.93032 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.54 11.67 55.50 0.65 -23.89 16 2 C 0.07 2.07 4.35 -17.47 -0.08 1.99 16 3 Si 0.90 22.23 29.60 -169.99 -5.03 17.19 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.34 -9.02 7.46 -14.93 -0.11 -9.13 16 8 H 0.08 1.95 7.08 -52.49 -0.37 1.58 16 9 N -0.45 -10.81 2.46 -106.54 -0.26 -11.07 16 10 C 0.48 11.81 6.96 -10.99 -0.08 11.73 16 11 O -0.53 -15.54 13.68 5.54 0.08 -15.46 16 12 C -0.06 -1.10 4.50 -29.04 -0.13 -1.24 16 13 C -0.19 -3.86 4.68 -104.25 -0.49 -4.35 16 14 C 0.09 1.75 11.87 -17.59 -0.21 1.54 16 15 N -0.33 -6.38 12.66 30.46 0.39 -5.99 16 16 N -0.28 -5.02 3.90 -10.71 -0.04 -5.06 16 17 C 0.11 1.46 11.19 -16.63 -0.19 1.27 16 18 C -0.17 -1.93 9.98 -39.91 -0.40 -2.33 16 19 C -0.10 -1.27 10.07 -39.52 -0.40 -1.67 16 20 C -0.09 -1.42 10.09 -39.40 -0.40 -1.82 16 21 C 0.11 1.98 6.76 -84.28 -0.57 1.41 16 22 C 0.13 2.46 3.21 -66.81 -0.21 2.25 16 23 C -0.13 -2.28 6.42 -25.03 -0.16 -2.45 16 24 C -0.12 -1.81 6.91 -24.69 -0.17 -1.98 16 25 C -0.12 -1.76 6.83 -25.08 -0.17 -1.93 16 26 C -0.13 -2.18 6.19 -25.61 -0.16 -2.34 16 27 H 0.26 7.52 8.32 -40.82 -0.34 7.18 16 28 H 0.08 1.46 7.81 -51.93 -0.41 1.05 16 29 H 0.07 1.26 7.78 -51.93 -0.40 0.85 16 30 H 0.19 3.12 8.06 -52.49 -0.42 2.70 16 31 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.07 1.13 5.82 -51.93 -0.30 0.82 16 36 H 0.09 1.99 7.10 -51.93 -0.37 1.62 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.41 6.85 -51.93 -0.36 1.05 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -35.11 352.66 -8.82 -43.93 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.99 Total: 4.07 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -3.92 Total: -9.03 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.73 Total: -46.01 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.08 Total: -15.46 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.11 -8.82 -43.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592598310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.286 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds