Wall clock time and date at job start Fri Apr 10 2020 22:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00306 * 2 1 4 4 H 1.48506 * 109.46603 * 269.99285 * 3 2 1 5 5 H 1.48490 * 109.47091 * 29.99260 * 3 2 1 6 6 H 1.48499 * 109.47136 * 149.99867 * 3 2 1 7 7 C 1.38953 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00389 * 199.09768 * 7 2 1 9 9 N 1.37104 * 119.99692 * 19.09463 * 7 2 1 10 10 C 1.34773 * 120.00023 * 42.83880 * 9 7 2 11 11 O 1.21297 * 119.99920 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99932 * 179.97438 * 10 9 7 13 13 C 1.50701 * 109.47020 * 179.97438 * 12 10 9 14 14 C 1.38545 * 126.21615 * 264.99934 * 13 12 10 15 15 N 1.31484 * 109.00711 * 180.02562 * 14 13 12 16 16 N 1.40049 * 108.91178 * 359.97438 * 15 14 13 17 17 C 1.36542 * 132.42596 * 180.02562 * 16 15 14 18 18 C 1.34929 * 120.65426 * 180.02562 * 17 16 15 19 19 C 1.40476 * 120.43338 * 359.96921 * 18 17 16 20 20 C 1.36062 * 119.58930 * 0.02562 * 19 18 17 21 21 C 1.37119 * 107.44717 * 0.02562 * 16 15 14 22 22 C 1.46500 * 119.99935 * 222.83562 * 9 7 2 23 23 C 1.54267 * 110.03174 * 59.59667 * 22 9 7 24 24 C 1.54972 * 104.15836 * 217.13826 * 23 22 9 25 25 C 1.54887 * 102.77932 * 37.88653 * 24 23 22 26 26 C 1.53880 * 110.03170 * 302.38282 * 22 9 7 27 27 H 0.97005 * 119.99740 * 354.76888 * 1 2 3 28 28 H 1.09005 * 109.46881 * 59.99904 * 12 10 9 29 29 H 1.08997 * 109.47535 * 299.99933 * 12 10 9 30 30 H 1.07996 * 125.49647 * 359.97438 * 14 13 12 31 31 H 1.07992 * 119.67372 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.78681 * 179.69713 * 18 17 16 33 33 H 1.08003 * 120.20566 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.38526 * 180.02562 * 20 19 18 35 35 H 1.08993 * 110.01549 * 180.98788 * 22 9 7 36 36 H 1.09005 * 110.48869 * 335.78239 * 23 22 9 37 37 H 1.08992 * 110.48652 * 98.42692 * 23 22 9 38 38 H 1.08998 * 110.71766 * 279.57083 * 24 23 22 39 39 H 1.09003 * 110.92375 * 156.29808 * 24 23 22 40 40 H 1.08998 * 110.48957 * 203.40617 * 25 24 23 41 41 H 1.09000 * 110.59761 * 80.81753 * 25 24 23 42 42 H 1.09002 * 110.02709 * 238.56736 * 26 22 9 43 43 H 1.08996 * 110.03202 * 359.94412 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4958 2.0462 -1.4002 5 1 1.4456 2.6527 0.6998 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0442 -1.2291 0.3065 9 7 1.3798 -2.3582 -0.3874 10 6 0.5747 -2.3566 -1.4682 11 8 0.4062 -1.3335 -2.0975 12 6 -0.1162 -3.6261 -1.8949 13 6 -0.9510 -3.3562 -3.1202 14 6 -2.3015 -3.0478 -3.1389 15 7 -2.6852 -2.8797 -4.3853 16 7 -1.5846 -3.0747 -5.2292 17 6 -1.4429 -3.0182 -6.5860 18 6 -0.2460 -3.2531 -7.1630 19 6 0.8759 -3.5595 -6.3751 20 6 0.7503 -3.6193 -5.0216 21 6 -0.5061 -3.3717 -4.4363 22 6 1.5829 -3.5939 0.3730 23 6 1.1280 -3.3963 1.8337 24 6 2.1572 -4.2045 2.6639 25 6 3.4851 -3.9448 1.9101 26 6 3.0808 -3.9428 0.4214 27 1 -0.4850 0.8366 0.0766 28 1 -0.7589 -3.9787 -1.0882 29 1 0.6301 -4.3868 -2.1237 30 1 -2.9369 -2.9604 -2.2700 31 1 -2.2973 -2.7841 -7.2036 32 1 -0.1508 -3.2095 -8.2380 33 1 1.8321 -3.7472 -6.8409 34 1 1.6044 -3.8533 -4.4035 35 1 1.0240 -4.4098 -0.0850 36 1 1.1636 -2.3411 2.1051 37 1 0.1236 -3.7944 1.9777 38 1 1.9100 -5.2661 2.6565 39 1 2.2134 -3.8296 3.6859 40 1 4.1998 -4.7430 2.1102 41 1 3.9040 -2.9791 2.1929 42 1 3.2487 -4.9286 -0.0124 43 1 3.6565 -3.1933 -0.1217 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592598310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:53 Heat of formation + Delta-G solvation = 58.395336 kcal Electronic energy + Delta-G solvation = -26468.581445 eV Core-core repulsion = 22901.109645 eV Total energy + Delta-G solvation = -3567.471800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.89287 -40.43562 -38.35570 -37.92452 -35.16126 -34.31646 -33.40142 -31.65609 -31.33970 -29.36414 -28.39692 -27.87454 -25.92351 -24.62785 -23.49449 -22.19777 -21.31850 -21.20537 -20.55653 -18.14807 -18.04824 -17.59404 -17.48848 -16.85586 -16.57006 -16.41282 -16.06697 -15.77504 -15.66335 -15.16198 -14.98598 -14.46559 -14.14947 -14.00470 -13.75123 -13.38506 -13.14359 -12.89765 -12.84329 -12.66536 -12.53935 -12.40587 -12.26887 -12.15276 -12.02015 -11.77229 -11.71433 -11.59182 -11.34593 -11.29557 -11.18184 -10.67735 -10.21571 -9.83021 -8.91776 -8.34992 -8.10219 -5.81759 -0.07075 0.21935 1.34525 1.42607 1.43684 1.46725 1.74678 2.34444 2.53220 2.63612 3.32437 3.33333 3.40928 3.78141 3.94728 3.96350 4.00408 4.07165 4.20421 4.23252 4.37428 4.44362 4.58507 4.61301 4.67704 4.77087 4.79359 4.81150 4.90111 4.95044 5.00900 5.07063 5.19036 5.20405 5.25232 5.35584 5.38535 5.50942 5.56850 5.60360 5.65539 5.67957 5.76422 6.02996 6.33515 6.61973 7.17921 7.41527 7.88648 8.57657 8.99058 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.004838 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.242328 B = 5786.301517 C = 6648.222123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.022 3.978 3 Si 0.954 3.046 4 H -0.298 1.298 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.335 4.335 8 H 0.076 0.924 9 N -0.463 5.463 10 C 0.466 3.534 11 O -0.583 6.583 12 C -0.038 4.038 13 C -0.238 4.238 14 C 0.074 3.926 15 N -0.359 5.359 16 N -0.285 5.285 17 C 0.078 3.922 18 C -0.149 4.149 19 C -0.076 4.076 20 C -0.131 4.131 21 C 0.098 3.902 22 C 0.121 3.879 23 C -0.126 4.126 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.126 4.126 27 H 0.251 0.749 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.194 0.806 31 H 0.188 0.812 32 H 0.200 0.800 33 H 0.178 0.822 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.084 0.916 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.531 -13.778 -7.488 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.225 1.225 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.463 4.463 8 H 0.093 0.907 9 N -0.186 5.186 10 C 0.255 3.745 11 O -0.464 6.464 12 C -0.080 4.080 13 C -0.249 4.249 14 C -0.100 4.100 15 N -0.184 5.184 16 N -0.052 5.052 17 C -0.046 4.046 18 C -0.170 4.170 19 C -0.099 4.099 20 C -0.150 4.150 21 C -0.022 4.022 22 C 0.017 3.983 23 C -0.165 4.165 24 C -0.148 4.148 25 C -0.152 4.152 26 C -0.165 4.165 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.211 0.789 31 H 0.205 0.795 32 H 0.217 0.783 33 H 0.195 0.805 34 H 0.163 0.837 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.163 -12.843 -8.531 15.569 hybrid contribution 0.460 1.461 0.920 1.787 sum 2.624 -11.382 -7.611 13.941 Atomic orbital electron populations 1.69949 1.07741 1.26694 1.46006 1.25870 0.95272 1.01959 0.95222 0.85548 0.79369 0.79915 0.77070 1.22511 1.21326 1.17698 1.18951 0.94827 0.85324 1.47245 0.90677 1.43648 1.43844 1.08071 1.22991 1.20773 0.82690 0.89995 0.81085 1.90486 1.63877 1.36062 1.55971 1.19768 0.97914 0.96006 0.94265 1.19586 0.94459 1.18047 0.92854 1.23786 0.95684 0.95374 0.95202 1.77634 1.06931 1.32918 1.00945 1.46361 1.07711 1.44526 1.06626 1.22211 1.02193 1.00955 0.79225 1.21399 0.89898 1.02489 1.03211 1.21638 1.01022 0.95176 0.92059 1.20865 0.94083 1.03188 0.96913 1.19634 0.89987 1.01070 0.91462 1.22020 0.96616 0.87299 0.92399 1.22591 0.98514 1.00129 0.95228 1.22414 0.94144 1.00190 0.98067 1.22245 0.97575 1.01108 0.94223 1.22419 0.95215 1.01199 0.97631 0.93955 0.88898 0.88010 0.78944 0.79471 0.78339 0.80498 0.83658 0.89206 0.93687 0.92551 0.89563 0.91622 0.89689 0.93580 0.89742 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.01 11.67 21.66 0.25 -53.76 16 2 C 0.02 1.30 4.35 84.93 0.37 1.67 16 3 Si 0.95 47.24 29.60 68.60 2.03 49.27 16 4 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.25 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.34 -18.36 7.46 84.04 0.63 -17.73 16 8 H 0.08 4.01 7.08 -2.91 -0.02 3.99 16 9 N -0.46 -22.64 2.46 -609.38 -1.50 -24.14 16 10 C 0.47 23.83 6.96 87.66 0.61 24.44 16 11 O -0.58 -36.15 13.68 -3.08 -0.04 -36.20 16 12 C -0.04 -1.50 4.50 29.10 0.13 -1.37 16 13 C -0.24 -9.74 4.68 -19.62 -0.09 -9.84 16 14 C 0.07 3.01 11.87 84.82 1.01 4.02 16 15 N -0.36 -14.50 12.66 -57.55 -0.73 -15.23 16 16 N -0.29 -10.25 3.90 -187.80 -0.73 -10.98 16 17 C 0.08 1.96 11.19 83.20 0.93 2.89 16 18 C -0.15 -2.71 9.98 22.05 0.22 -2.49 16 19 C -0.08 -1.58 10.07 22.31 0.22 -1.36 16 20 C -0.13 -3.91 10.09 22.39 0.23 -3.68 16 21 C 0.10 3.67 6.76 39.11 0.26 3.94 16 22 C 0.12 4.47 3.21 45.72 0.15 4.62 16 23 C -0.13 -4.56 6.42 31.70 0.20 -4.36 16 24 C -0.11 -2.95 6.91 31.91 0.22 -2.73 16 25 C -0.11 -3.12 6.83 31.67 0.22 -2.90 16 26 C -0.13 -3.96 6.19 31.32 0.19 -3.76 16 27 H 0.25 15.39 8.32 -92.70 -0.77 14.62 16 28 H 0.09 3.35 7.81 -2.38 -0.02 3.33 16 29 H 0.10 3.33 7.78 -2.39 -0.02 3.31 16 30 H 0.19 7.04 8.06 -2.91 -0.02 7.01 16 31 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 35 H 0.09 2.88 5.82 -2.39 -0.01 2.87 16 36 H 0.04 2.04 7.10 -2.38 -0.02 2.02 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.05 1.76 6.85 -2.39 -0.02 1.74 16 Total: -1.00 -83.45 352.66 5.79 -77.66 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 1.01 Total: 22.02 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 5.50 Total: -8.65 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -2.71 Total: -104.10 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.04 Total: -36.20 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -83.45 5.79 -77.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592598310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.051 kcal (2) G-P(sol) polarization free energy of solvation -83.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds