Wall clock time and date at job start Fri Apr 10 2020 22:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36267 * 120.06325 * 2 1 4 4 C 1.39915 * 120.12131 * 180.25702 * 3 2 1 5 5 C 1.47995 * 119.87714 * 179.76067 * 4 3 2 6 6 C 1.39632 * 120.12672 * 179.72456 * 5 4 3 7 7 C 1.37927 * 119.90292 * 180.02562 * 6 5 4 8 8 C 1.38374 * 120.17021 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.86398 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47305 * 105.00079 * 9 8 7 11 11 C 1.46899 * 111.00395 * 169.99691 * 10 9 8 12 12 C 1.46900 * 110.99829 * 293.95569 * 10 9 8 13 13 C 1.38580 * 120.26625 * 0.23144 * 8 7 6 14 14 F 1.35103 * 119.95377 * 179.72303 * 13 8 7 15 15 C 1.38189 * 120.09576 * 359.49414 * 13 8 7 16 16 C 1.39947 * 120.23876 * 359.48464 * 4 3 2 17 17 C 1.36239 * 120.12121 * 0.25041 * 16 4 3 18 18 C 1.40919 * 120.06069 * 179.74246 * 2 1 3 19 19 C 1.41029 * 120.11805 * 0.02562 * 18 2 1 20 20 H 1.08001 * 119.99765 * 333.71801 * 19 18 2 21 21 C 1.40001 * 120.00187 * 153.71548 * 19 18 2 22 22 N 1.30799 * 120.00076 * 343.39611 * 21 19 18 23 23 Si 1.86800 * 120.00461 * 163.39531 * 21 19 18 24 24 H 1.48504 * 109.46906 * 59.99960 * 23 21 19 25 25 H 1.48496 * 109.47778 * 180.02562 * 23 21 19 26 26 H 1.48510 * 109.46933 * 300.00620 * 23 21 19 27 27 H 1.09001 * 109.46839 * 270.26052 * 1 2 3 28 28 H 1.08993 * 109.47102 * 30.25676 * 1 2 3 29 29 H 1.09001 * 109.47115 * 150.26358 * 1 2 3 30 30 H 1.08004 * 119.93628 * 0.02562 * 3 2 1 31 31 H 1.08006 * 120.04873 * 0.04250 * 6 5 4 32 32 H 1.08003 * 119.91283 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47264 * 345.00012 * 9 8 7 34 34 H 1.09007 * 109.47097 * 224.99812 * 9 8 7 35 35 H 1.09003 * 109.46976 * 60.00072 * 11 10 9 36 36 H 1.08997 * 109.47234 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.46711 * 300.00290 * 11 10 9 38 38 H 1.08996 * 109.47826 * 59.99583 * 12 10 9 39 39 H 1.09000 * 109.46969 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.46767 * 299.99136 * 12 10 9 41 41 H 1.07999 * 120.08864 * 180.23903 * 15 13 8 42 42 H 1.08008 * 119.94437 * 180.23420 * 16 4 3 43 43 H 1.08003 * 120.06293 * 179.97438 * 17 16 4 44 44 H 0.96999 * 120.00271 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1897 1.1794 0.0000 4 6 3.5888 1.1808 -0.0054 5 6 4.3247 2.4648 -0.0108 6 6 5.7210 2.4723 -0.0104 7 6 6.4022 3.6716 -0.0148 8 6 5.7054 4.8671 -0.0191 9 6 6.4566 6.1735 -0.0234 10 7 6.3904 6.7721 -1.3632 11 6 6.9027 8.1488 -1.3508 12 6 7.1129 5.9503 -2.3433 13 6 4.3196 4.8679 -0.0142 14 9 3.6457 6.0388 -0.0127 15 6 3.6260 3.6727 -0.0154 16 6 4.2948 -0.0275 0.0000 17 6 3.6223 -1.2123 0.0054 18 6 2.2129 -1.2196 0.0055 19 6 1.5116 -2.4432 0.0104 20 1 0.5153 -2.4928 0.4244 21 6 2.1068 -3.5934 -0.5213 22 7 3.1504 -3.4881 -1.3028 23 14 1.4106 -5.2785 -0.1149 24 1 0.0018 -5.3568 -0.5779 25 1 2.2151 -6.3241 -0.7966 26 1 1.4618 -5.4942 1.3536 27 1 -0.3633 0.0047 1.0277 28 1 -0.3633 0.8876 -0.5178 29 1 -0.3633 -0.8923 -0.5097 30 1 1.6496 2.1147 0.0004 31 1 6.2669 1.5403 -0.0069 32 1 7.4822 3.6776 -0.0141 33 1 7.4982 5.9946 0.2435 34 1 6.0075 6.8533 0.7008 35 1 7.9413 8.1470 -1.0198 36 1 6.8426 8.5680 -2.3551 37 1 6.3049 8.7527 -0.6682 38 1 6.6679 4.9561 -2.3823 39 1 7.0483 6.4165 -3.3264 40 1 8.1590 5.8689 -2.0483 41 1 2.5460 3.6734 -0.0155 42 1 5.3749 -0.0209 -0.0004 43 1 4.1681 -2.1443 0.0092 44 1 3.5630 -4.2851 -1.6709 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592987122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:03 Heat of formation + Delta-G solvation = -10.337355 kcal Electronic energy + Delta-G solvation = -24880.365594 eV Core-core repulsion = 21289.993359 eV Total energy + Delta-G solvation = -3590.372235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.154 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.41769 -39.15643 -37.93333 -36.78578 -34.05068 -32.40243 -31.22024 -30.02245 -29.40426 -27.62846 -26.95416 -26.13695 -24.51566 -22.54849 -22.51819 -21.06698 -20.41220 -19.33360 -17.46350 -16.71442 -16.06350 -15.83699 -15.69071 -15.42675 -14.91571 -14.81871 -14.68038 -13.95610 -13.77764 -13.71446 -13.13547 -12.78532 -12.74629 -12.66069 -12.45002 -12.21148 -12.12080 -11.91275 -11.75020 -11.69101 -11.65184 -11.28845 -11.22535 -11.17383 -10.92520 -10.83410 -10.51304 -10.42766 -9.70246 -9.45604 -9.38436 -8.66235 -8.39331 -8.28615 -7.53622 -7.13027 -6.94657 -4.50362 1.36842 1.69896 2.68825 2.94481 2.96540 2.98524 3.08936 3.75110 3.89115 4.19484 4.58953 4.69814 4.86256 5.01090 5.10194 5.23382 5.31506 5.41518 5.50879 5.51466 5.52966 5.64760 5.71179 5.75423 5.80902 5.93260 6.07265 6.13053 6.31648 6.39038 6.51049 6.54131 6.59031 6.65961 6.70192 6.77475 6.87385 6.94642 6.97626 6.99459 7.11822 7.30585 7.39636 7.49070 7.77411 7.88190 7.98446 8.09759 8.41575 8.65160 8.77640 9.92219 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.002750 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.620613 B =10178.891359 C =10817.077492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.202 4.202 3 C -0.056 4.056 4 C -0.208 4.208 5 C 0.058 3.942 6 C -0.158 4.158 7 C -0.075 4.075 8 C -0.167 4.167 9 C 0.107 3.893 10 N -0.542 5.542 11 C 0.026 3.974 12 C 0.025 3.975 13 C 0.133 3.867 14 F -0.142 7.142 15 C -0.188 4.188 16 C -0.074 4.074 17 C -0.170 4.170 18 C 0.125 3.875 19 C -0.440 4.440 20 H 0.085 0.915 21 C 0.073 3.927 22 N -0.776 5.776 23 Si 0.912 3.088 24 H -0.263 1.263 25 H -0.276 1.276 26 H -0.261 1.261 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.022 0.978 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.022 0.978 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.210 11.141 0.729 12.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.203 4.203 3 C -0.074 4.074 4 C -0.209 4.209 5 C 0.057 3.943 6 C -0.176 4.176 7 C -0.094 4.094 8 C -0.168 4.168 9 C -0.020 4.020 10 N -0.266 5.266 11 C -0.122 4.122 12 C -0.124 4.124 13 C 0.114 3.886 14 F -0.120 7.120 15 C -0.207 4.207 16 C -0.092 4.092 17 C -0.189 4.189 18 C 0.122 3.878 19 C -0.467 4.467 20 H 0.103 0.897 21 C -0.148 4.148 22 N -0.399 5.399 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.201 1.201 26 H -0.186 1.186 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.148 0.852 42 H 0.111 0.889 43 H 0.136 0.864 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.855 11.061 0.423 12.523 hybrid contribution 0.560 -0.629 0.239 0.876 sum 6.415 10.432 0.662 12.265 Atomic orbital electron populations 1.20423 0.93318 1.00774 0.99804 1.19458 0.94585 0.92977 1.13267 1.20290 0.92825 0.96192 0.98122 1.17982 0.92514 0.90299 1.20155 1.18804 0.92323 0.92330 0.90826 1.21197 0.93833 0.97685 1.04930 1.20675 0.98922 0.91233 0.98570 1.19418 0.91860 0.95119 1.10439 1.20822 0.97645 0.93211 0.90367 1.61981 1.55755 1.02250 1.06591 1.22364 0.97526 0.89939 1.02399 1.22395 0.95482 0.98982 0.95503 1.17308 0.89289 0.80801 1.01234 1.91441 1.80385 1.46433 1.93789 1.21140 1.00566 0.90623 1.08357 1.20504 0.97397 0.92345 0.98974 1.20971 0.94447 0.96621 1.06884 1.17615 0.91955 0.91707 0.86545 1.19719 1.02047 0.92410 1.32553 0.89678 1.26055 0.94175 1.01876 0.92652 1.69800 1.17485 1.32434 1.20196 0.86293 0.80016 0.80034 0.80115 1.18712 1.20106 1.18552 0.93883 0.94171 0.91986 0.88865 0.85704 0.86417 0.94099 0.90341 0.95934 0.91444 0.91424 0.90732 0.91692 0.95901 0.85242 0.88892 0.86370 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.39 36.01 0.34 -1.37 16 2 C -0.20 -4.65 5.90 -104.32 -0.62 -5.26 16 3 C -0.06 -1.23 9.00 -39.66 -0.36 -1.58 16 4 C -0.21 -4.51 5.90 -104.63 -0.62 -5.13 16 5 C 0.06 1.10 5.88 -104.89 -0.62 0.48 16 6 C -0.16 -2.65 9.43 -39.18 -0.37 -3.02 16 7 C -0.08 -1.10 9.10 -39.65 -0.36 -1.46 16 8 C -0.17 -2.50 4.44 -104.45 -0.46 -2.97 16 9 C 0.11 1.34 4.77 -4.98 -0.02 1.32 16 10 N -0.54 -6.74 5.01 -252.72 -1.27 -8.00 16 11 C 0.03 0.25 9.57 60.06 0.57 0.82 16 12 C 0.02 0.28 9.34 60.06 0.56 0.84 16 13 C 0.13 2.25 7.24 -39.47 -0.29 1.97 16 14 F -0.14 -2.41 16.73 2.25 0.04 -2.37 16 15 C -0.19 -3.40 9.41 -39.11 -0.37 -3.77 16 16 C -0.07 -1.64 9.36 -39.66 -0.37 -2.02 16 17 C -0.17 -4.16 8.62 -39.28 -0.34 -4.50 16 18 C 0.12 3.11 5.56 -106.80 -0.59 2.52 16 19 C -0.44 -10.71 8.09 -37.86 -0.31 -11.02 16 20 H 0.09 1.97 6.88 -52.49 -0.36 1.61 16 21 C 0.07 1.69 5.15 -17.33 -0.09 1.60 16 22 N -0.78 -18.65 10.99 55.55 0.61 -18.04 16 23 Si 0.91 17.28 29.59 -169.99 -5.03 12.25 16 24 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 25 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 26 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 29 H 0.06 1.24 6.77 -51.93 -0.35 0.89 16 30 H 0.09 1.84 6.18 -52.48 -0.32 1.51 16 31 H 0.13 1.98 6.18 -52.48 -0.32 1.66 16 32 H 0.12 1.40 7.99 -52.48 -0.42 0.98 16 33 H 0.04 0.46 7.92 -51.93 -0.41 0.05 16 34 H 0.08 0.97 7.99 -51.93 -0.41 0.56 16 35 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 37 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.07 0.96 6.88 -51.93 -0.36 0.61 16 39 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 40 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.13 2.28 6.18 -52.49 -0.32 1.95 16 42 H 0.09 1.84 6.18 -52.48 -0.32 1.52 16 43 H 0.12 2.96 6.23 -52.48 -0.33 2.63 16 44 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -25.80 360.30 -10.55 -36.34 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.03 Total: 6.92 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: -4.30 Total: -32.54 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: -0.66 Total: -26.04 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -25.80 -10.55 -36.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592987122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.005 kcal (2) G-P(sol) polarization free energy of solvation -25.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds