Wall clock time and date at job start Fri Apr 10 2020 22:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39655 * 120.14977 * 45.41719 * 3 2 1 5 5 C 1.37925 * 119.84623 * 179.97438 * 4 3 2 6 6 C 1.38380 * 120.15000 * 0.02562 * 5 4 3 7 7 C 1.38344 * 120.30714 * 359.70163 * 6 5 4 8 8 C 1.50698 * 119.92329 * 180.27505 * 7 6 5 9 9 N 1.46894 * 109.47471 * 270.27678 * 8 7 6 10 10 C 1.46847 * 110.99938 * 45.79087 * 9 8 7 11 11 C 1.53043 * 109.52353 * 185.84353 * 10 9 8 12 12 C 1.53127 * 109.27394 * 300.82072 * 11 10 9 13 13 N 1.46501 * 109.56987 * 177.59297 * 12 11 10 14 14 C 1.34775 * 120.00025 * 85.28711 * 13 12 11 15 15 O 1.21691 * 119.99990 * 359.97438 * 14 13 12 16 16 C 1.46376 * 119.99967 * 179.97438 * 14 13 12 17 17 H 1.08006 * 120.00117 * 353.94027 * 16 14 13 18 18 C 1.40044 * 119.99977 * 173.93714 * 16 14 13 19 19 N 1.30668 * 120.00272 * 6.15120 * 18 16 14 20 20 Si 1.86809 * 119.99999 * 186.15049 * 18 16 14 21 21 H 1.48497 * 109.46815 * 94.98587 * 20 18 16 22 22 H 1.48502 * 109.46768 * 214.98683 * 20 18 16 23 23 H 1.48501 * 109.47068 * 334.98206 * 20 18 16 24 24 C 1.53116 * 109.16121 * 57.65757 * 12 11 10 25 25 C 1.46845 * 111.00469 * 170.00594 * 9 8 7 26 26 C 1.37971 * 120.14947 * 0.55689 * 7 6 5 27 27 H 1.08004 * 120.07287 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.92570 * 179.97438 * 5 4 3 29 29 H 1.08005 * 119.84931 * 180.02562 * 6 5 4 30 30 H 1.09003 * 109.47244 * 30.28033 * 8 7 6 31 31 H 1.09006 * 109.46576 * 150.27883 * 8 7 6 32 32 H 1.08996 * 109.46518 * 305.85432 * 10 9 8 33 33 H 1.09000 * 109.46463 * 65.82795 * 10 9 8 34 34 H 1.09002 * 109.50332 * 180.88219 * 11 10 9 35 35 H 1.08995 * 109.53827 * 60.77986 * 11 10 9 36 36 H 1.09001 * 109.52136 * 297.74501 * 12 11 10 37 37 H 0.97004 * 119.99575 * 265.28431 * 13 12 11 38 38 H 0.97001 * 120.00385 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.49935 * 182.40362 * 24 12 11 40 40 H 1.09000 * 109.53824 * 62.30284 * 24 12 11 41 41 H 1.08999 * 109.45793 * 294.17475 * 25 9 8 42 42 H 1.09003 * 109.46220 * 54.14995 * 25 9 8 43 43 H 1.08000 * 120.07735 * 179.74871 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.8467 -0.8601 5 6 4.6490 -0.8406 -0.8553 6 6 5.3373 0.0022 -0.0004 7 6 4.6485 0.8482 0.8502 8 6 5.4068 1.7670 1.7732 9 7 5.6595 1.0814 3.0476 10 6 6.1472 -0.2853 2.8222 11 6 6.2602 -1.0154 4.1625 12 6 7.2259 -0.2526 5.0737 13 7 7.2950 -0.9143 6.3790 14 6 8.1439 -1.9438 6.5686 15 8 8.8527 -2.3240 5.6554 16 6 8.2133 -2.6045 7.8729 17 1 7.6582 -2.2070 8.7098 18 6 8.9994 -3.7520 8.0356 19 7 9.7640 -4.1640 7.0594 20 14 8.9548 -4.6938 9.6483 21 1 7.9786 -5.8079 9.5440 22 1 10.3037 -5.2430 9.9382 23 1 8.5468 -3.7790 10.7447 24 6 6.7206 1.1816 5.2531 25 6 6.5941 1.8480 3.8813 26 6 3.2688 0.8486 0.8596 27 1 2.7337 -1.5053 -1.5275 28 1 5.1931 -1.4956 -1.5196 29 1 6.4174 0.0033 -0.0010 30 1 6.3564 2.0410 1.3135 31 1 4.8181 2.6662 1.9549 32 1 5.4494 -0.8180 2.1763 33 1 7.1267 -0.2474 2.3455 34 1 6.6371 -2.0247 3.9964 35 1 5.2788 -1.0664 4.6338 36 1 8.2173 -0.2358 4.6211 37 1 6.7297 -0.6114 7.1068 38 1 10.3088 -4.9586 7.1722 39 1 7.4264 1.7419 5.8663 40 1 5.7463 1.1664 5.7415 41 1 7.5715 1.8759 3.3996 42 1 6.2209 2.8647 4.0046 43 1 2.7322 1.5066 1.5270 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593885639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:05 Heat of formation + Delta-G solvation = 14.999495 kcal Electronic energy + Delta-G solvation = -24923.007995 eV Core-core repulsion = 21353.654410 eV Total energy + Delta-G solvation = -3569.353585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26138 -38.81013 -37.11732 -36.56815 -34.37474 -32.55101 -31.97933 -31.64965 -30.60481 -29.90431 -26.69170 -25.54399 -24.20725 -23.09275 -22.75449 -21.52897 -19.73886 -19.39036 -18.55763 -17.14012 -16.61986 -16.12152 -15.93954 -15.32787 -15.10664 -14.67737 -14.32795 -14.29515 -14.22288 -14.00647 -13.68032 -13.40429 -13.16046 -13.11205 -12.79638 -12.50145 -12.34802 -12.25241 -12.00889 -11.82419 -11.65807 -11.31150 -11.28162 -11.02649 -10.95927 -10.77484 -10.45398 -10.25362 -10.17204 -9.98371 -9.29385 -9.16387 -8.83710 -8.30142 -7.58780 -7.46203 -6.18292 -4.62169 0.45391 0.96037 2.39355 2.63777 3.14364 3.21726 3.25037 3.49061 3.58340 4.01616 4.11488 4.36027 4.51517 4.59352 4.69172 4.76346 4.88806 4.94461 5.06699 5.16908 5.22791 5.31694 5.38394 5.52901 5.55660 5.61787 5.64105 5.81328 5.87657 5.92859 5.94180 5.97834 6.01193 6.07256 6.17096 6.27442 6.43562 6.45232 6.67559 6.85879 7.05659 7.13915 7.20502 7.44901 7.96560 8.15076 8.36292 9.04181 9.57229 10.61345 10.80569 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.002649 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.325676 B =10566.154245 C =11001.792405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.258 3.742 3 C -0.033 4.033 4 C -0.071 4.071 5 C -0.120 4.120 6 C -0.080 4.080 7 C -0.081 4.081 8 C 0.091 3.909 9 N -0.533 5.533 10 C 0.055 3.945 11 C -0.123 4.123 12 C 0.156 3.844 13 N -0.763 5.763 14 C 0.556 3.444 15 O -0.582 6.582 16 C -0.547 4.547 17 H 0.067 0.933 18 C 0.088 3.912 19 N -0.769 5.769 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.265 1.265 24 C -0.122 4.122 25 C 0.062 3.938 26 C -0.050 4.050 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.379 0.621 38 H 0.267 0.733 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.660 11.415 -13.765 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.058 4.058 3 C -0.037 4.037 4 C -0.092 4.092 5 C -0.138 4.138 6 C -0.100 4.100 7 C -0.081 4.081 8 C -0.036 4.036 9 N -0.258 5.258 10 C -0.073 4.073 11 C -0.163 4.163 12 C 0.050 3.950 13 N -0.416 5.416 14 C 0.360 3.640 15 O -0.465 6.465 16 C -0.584 4.584 17 H 0.085 0.915 18 C -0.131 4.131 19 N -0.397 5.397 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.160 4.160 25 C -0.066 4.066 26 C -0.071 4.071 27 H 0.149 0.851 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.211 0.789 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.092 0.908 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.175 10.970 -14.235 20.652 hybrid contribution 0.880 -0.383 0.736 1.209 sum -9.295 10.587 -13.499 19.512 Atomic orbital electron populations 1.81256 1.12112 1.08131 1.08151 1.25728 0.92681 0.93703 0.93665 1.15982 0.84253 1.01847 1.01598 1.21183 0.94437 0.96644 0.96900 1.21083 0.93573 0.99522 0.99592 1.21429 1.00659 0.93966 0.93913 1.19703 0.93258 0.98058 0.97090 1.21098 0.98386 0.95604 0.88496 1.62137 1.46771 1.02799 1.14046 1.22243 0.98071 0.88588 0.98413 1.22005 1.00284 0.99721 0.94276 1.20491 0.98129 0.89812 0.86610 1.46171 1.46195 1.38098 1.11149 1.18196 0.78369 0.77968 0.89451 1.90586 1.45321 1.65418 1.45174 1.20904 1.30333 1.11832 0.95312 0.91487 1.25692 0.93375 0.96886 0.97172 1.70024 1.18503 1.19980 1.31239 0.86393 0.77986 0.80013 0.82557 1.19828 1.20501 1.18914 1.21859 1.01840 0.96401 0.95942 1.22036 0.93792 0.96886 0.93898 1.21044 0.93537 0.96682 0.95800 0.85078 0.84770 0.85244 0.93544 0.89611 0.90520 0.94881 0.90888 0.91769 0.91204 0.78923 0.92198 0.91266 0.91070 0.94653 0.90788 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.35 18.54 41.84 0.78 -4.57 16 2 C 0.26 2.67 15.33 -22.47 -0.34 2.32 16 3 C -0.03 -0.28 5.73 -106.93 -0.61 -0.90 16 4 C -0.07 -0.51 9.76 -39.17 -0.38 -0.89 16 5 C -0.12 -0.81 10.03 -39.64 -0.40 -1.21 16 6 C -0.08 -0.61 7.76 -39.49 -0.31 -0.92 16 7 C -0.08 -0.67 4.13 -104.68 -0.43 -1.10 16 8 C 0.09 0.77 5.42 -4.98 -0.03 0.75 16 9 N -0.53 -6.00 4.80 -236.12 -1.13 -7.14 16 10 C 0.05 0.72 4.57 -3.83 -0.02 0.71 16 11 C -0.12 -2.11 5.68 -26.64 -0.15 -2.26 16 12 C 0.16 2.86 2.52 -67.80 -0.17 2.69 16 13 N -0.76 -16.63 5.08 -55.09 -0.28 -16.91 16 14 C 0.56 15.54 7.71 -12.99 -0.10 15.44 16 15 O -0.58 -18.44 14.71 5.20 0.08 -18.36 16 16 C -0.55 -15.34 9.53 -35.63 -0.34 -15.68 16 17 H 0.07 1.73 7.86 -52.48 -0.41 1.32 16 18 C 0.09 2.45 5.49 -17.37 -0.10 2.36 16 19 N -0.77 -22.92 11.85 55.55 0.66 -22.26 16 20 Si 0.91 20.09 29.56 -169.99 -5.03 15.07 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 24 C -0.12 -1.68 5.57 -26.65 -0.15 -1.83 16 25 C 0.06 0.70 5.42 -3.84 -0.02 0.68 16 26 C -0.05 -0.41 9.41 -39.17 -0.37 -0.78 16 27 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 28 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 29 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 30 H 0.05 0.37 8.02 -51.93 -0.42 -0.05 16 31 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.08 0.95 5.63 -51.93 -0.29 0.66 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.48 7.57 -51.93 -0.39 1.09 16 37 H 0.38 7.37 8.58 -40.82 -0.35 7.02 16 38 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -34.63 363.17 -9.44 -44.07 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.07 Total: 5.24 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.92 Total: -0.61 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.02 Total: -50.87 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.08 Total: -18.36 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.63 -9.44 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593885639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.067 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds