Wall clock time and date at job start Fri Apr 10 2020 22:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39655 * 120.14977 * 45.41719 * 3 2 1 5 5 C 1.37925 * 119.84623 * 179.97438 * 4 3 2 6 6 C 1.38380 * 120.15000 * 0.02562 * 5 4 3 7 7 C 1.38344 * 120.30714 * 359.70163 * 6 5 4 8 8 C 1.50698 * 119.92329 * 180.27505 * 7 6 5 9 9 N 1.46894 * 109.47471 * 270.27678 * 8 7 6 10 10 C 1.46847 * 110.99938 * 45.79087 * 9 8 7 11 11 C 1.53043 * 109.52353 * 185.84353 * 10 9 8 12 12 C 1.53127 * 109.27394 * 300.82072 * 11 10 9 13 13 N 1.46501 * 109.56987 * 177.59297 * 12 11 10 14 14 C 1.34775 * 120.00025 * 85.28711 * 13 12 11 15 15 O 1.21691 * 119.99990 * 359.97438 * 14 13 12 16 16 C 1.46376 * 119.99967 * 179.97438 * 14 13 12 17 17 H 1.08006 * 120.00117 * 353.94027 * 16 14 13 18 18 C 1.40044 * 119.99977 * 173.93714 * 16 14 13 19 19 N 1.30668 * 120.00272 * 6.15120 * 18 16 14 20 20 Si 1.86809 * 119.99999 * 186.15049 * 18 16 14 21 21 H 1.48497 * 109.46815 * 94.98587 * 20 18 16 22 22 H 1.48502 * 109.46768 * 214.98683 * 20 18 16 23 23 H 1.48501 * 109.47068 * 334.98206 * 20 18 16 24 24 C 1.53116 * 109.16121 * 57.65757 * 12 11 10 25 25 C 1.46845 * 111.00469 * 170.00594 * 9 8 7 26 26 C 1.37971 * 120.14947 * 0.55689 * 7 6 5 27 27 H 1.08004 * 120.07287 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.92570 * 179.97438 * 5 4 3 29 29 H 1.08005 * 119.84931 * 180.02562 * 6 5 4 30 30 H 1.09003 * 109.47244 * 30.28033 * 8 7 6 31 31 H 1.09006 * 109.46576 * 150.27883 * 8 7 6 32 32 H 1.08996 * 109.46518 * 305.85432 * 10 9 8 33 33 H 1.09000 * 109.46463 * 65.82795 * 10 9 8 34 34 H 1.09002 * 109.50332 * 180.88219 * 11 10 9 35 35 H 1.08995 * 109.53827 * 60.77986 * 11 10 9 36 36 H 1.09001 * 109.52136 * 297.74501 * 12 11 10 37 37 H 0.97004 * 119.99575 * 265.28431 * 13 12 11 38 38 H 0.97001 * 120.00385 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.49935 * 182.40362 * 24 12 11 40 40 H 1.09000 * 109.53824 * 62.30284 * 24 12 11 41 41 H 1.08999 * 109.45793 * 294.17475 * 25 9 8 42 42 H 1.09003 * 109.46220 * 54.14995 * 25 9 8 43 43 H 1.08000 * 120.07735 * 179.74871 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.8467 -0.8601 5 6 4.6490 -0.8406 -0.8553 6 6 5.3373 0.0022 -0.0004 7 6 4.6485 0.8482 0.8502 8 6 5.4068 1.7670 1.7732 9 7 5.6595 1.0814 3.0476 10 6 6.1472 -0.2853 2.8222 11 6 6.2602 -1.0154 4.1625 12 6 7.2259 -0.2526 5.0737 13 7 7.2950 -0.9143 6.3790 14 6 8.1439 -1.9438 6.5686 15 8 8.8527 -2.3240 5.6554 16 6 8.2133 -2.6045 7.8729 17 1 7.6582 -2.2070 8.7098 18 6 8.9994 -3.7520 8.0356 19 7 9.7640 -4.1640 7.0594 20 14 8.9548 -4.6938 9.6483 21 1 7.9786 -5.8079 9.5440 22 1 10.3037 -5.2430 9.9382 23 1 8.5468 -3.7790 10.7447 24 6 6.7206 1.1816 5.2531 25 6 6.5941 1.8480 3.8813 26 6 3.2688 0.8486 0.8596 27 1 2.7337 -1.5053 -1.5275 28 1 5.1931 -1.4956 -1.5196 29 1 6.4174 0.0033 -0.0010 30 1 6.3564 2.0410 1.3135 31 1 4.8181 2.6662 1.9549 32 1 5.4494 -0.8180 2.1763 33 1 7.1267 -0.2474 2.3455 34 1 6.6371 -2.0247 3.9964 35 1 5.2788 -1.0664 4.6338 36 1 8.2173 -0.2358 4.6211 37 1 6.7297 -0.6114 7.1068 38 1 10.3088 -4.9586 7.1722 39 1 7.4264 1.7419 5.8663 40 1 5.7463 1.1664 5.7415 41 1 7.5715 1.8759 3.3996 42 1 6.2209 2.8647 4.0046 43 1 2.7322 1.5066 1.5270 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593885639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:05 Heat of formation + Delta-G solvation = -8.758866 kcal Electronic energy + Delta-G solvation = -24924.038235 eV Core-core repulsion = 21353.654410 eV Total energy + Delta-G solvation = -3570.383825 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02519 -40.02341 -38.74312 -37.52682 -35.79363 -34.54737 -33.27221 -32.30323 -31.78118 -31.12857 -28.45078 -26.73587 -24.89047 -24.14101 -23.95464 -22.34836 -21.50325 -20.82985 -19.26421 -19.06269 -17.43476 -17.22093 -17.18744 -16.63038 -16.13539 -15.96476 -15.87588 -15.26798 -15.17651 -15.05046 -14.90246 -14.38026 -14.32107 -14.12098 -14.06254 -13.90682 -13.60663 -13.27531 -13.14896 -12.95161 -12.84803 -12.77656 -12.58480 -12.40180 -12.12002 -12.06611 -11.98286 -11.94956 -11.52309 -11.35335 -10.91471 -9.89215 -9.83715 -9.79391 -9.37215 -9.17708 -8.27815 -6.82538 -0.18557 0.38140 1.40442 1.41503 1.57103 1.59286 1.91393 2.25574 2.49937 2.77869 2.86440 3.14214 3.19242 3.62901 3.71144 3.90739 3.96879 4.07400 4.15263 4.21897 4.28243 4.31711 4.39516 4.50624 4.60095 4.66448 4.70412 4.77473 4.82254 4.92632 4.94974 5.05245 5.07110 5.15058 5.30944 5.34134 5.34263 5.40255 5.42275 5.56683 5.87734 5.92335 6.11642 6.18400 6.28624 6.37654 6.42443 6.89321 7.61055 8.53224 8.70564 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.002649 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.325676 B =10566.154245 C =11001.792405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.280 3.720 3 C -0.047 4.047 4 C -0.066 4.066 5 C -0.120 4.120 6 C -0.084 4.084 7 C -0.091 4.091 8 C 0.093 3.907 9 N -0.535 5.535 10 C 0.069 3.931 11 C -0.116 4.116 12 C 0.153 3.847 13 N -0.752 5.752 14 C 0.541 3.459 15 O -0.631 6.631 16 C -0.576 4.576 17 H 0.085 0.915 18 C 0.029 3.971 19 N -0.822 5.822 20 Si 0.995 3.005 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.249 1.249 24 C -0.111 4.111 25 C 0.065 3.935 26 C -0.049 4.049 27 H 0.148 0.852 28 H 0.155 0.845 29 H 0.136 0.864 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.393 0.607 38 H 0.274 0.726 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.107 0.893 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.477 12.545 -13.306 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.034 4.034 3 C -0.050 4.050 4 C -0.087 4.087 5 C -0.138 4.138 6 C -0.103 4.103 7 C -0.091 4.091 8 C -0.033 4.033 9 N -0.260 5.260 10 C -0.059 4.059 11 C -0.155 4.155 12 C 0.047 3.953 13 N -0.405 5.405 14 C 0.345 3.655 15 O -0.519 6.519 16 C -0.613 4.613 17 H 0.103 0.897 18 C -0.186 4.186 19 N -0.452 5.452 20 Si 0.815 3.185 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.172 1.172 24 C -0.149 4.149 25 C -0.063 4.063 26 C -0.070 4.070 27 H 0.165 0.835 28 H 0.173 0.827 29 H 0.154 0.846 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.105 0.895 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.226 0.774 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.125 0.875 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.037 12.162 -13.779 21.438 hybrid contribution 1.163 -0.694 0.522 1.451 sum -9.874 11.467 -13.257 20.119 Atomic orbital electron populations 1.81273 1.13469 1.09879 1.09893 1.25983 0.92879 0.92293 0.92256 1.16062 0.83202 1.03015 1.02756 1.21419 0.94736 0.96115 0.96410 1.21338 0.93476 0.99423 0.99545 1.21640 1.01170 0.93758 0.93761 1.19723 0.93209 0.98597 0.97583 1.21184 0.99242 0.95888 0.87030 1.62103 1.46229 1.01827 1.15879 1.22012 0.98265 0.89946 0.95706 1.21851 0.99386 0.97807 0.96505 1.20688 0.96953 0.92829 0.84825 1.45894 1.44848 1.36677 1.13055 1.18537 0.78699 0.78991 0.89292 1.90539 1.47519 1.67261 1.46539 1.21448 1.31066 1.12763 0.96009 0.89690 1.26940 0.92209 0.97709 1.01709 1.70187 1.19678 1.20914 1.34381 0.85043 0.78356 0.78270 0.76830 1.18932 1.19739 1.17193 1.21777 1.02055 0.92922 0.98148 1.22057 0.94115 0.97991 0.92134 1.21133 0.93648 0.96575 0.95673 0.83460 0.82705 0.84632 0.92522 0.87598 0.89515 0.95422 0.95362 0.91590 0.94765 0.77359 0.91660 0.90777 0.90034 0.94885 0.87470 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.83 18.54 19.00 0.35 -11.48 16 2 C 0.28 5.58 15.33 88.33 1.35 6.94 16 3 C -0.05 -0.72 5.73 -21.36 -0.12 -0.84 16 4 C -0.07 -0.81 9.76 22.54 0.22 -0.59 16 5 C -0.12 -1.35 10.03 22.23 0.22 -1.12 16 6 C -0.08 -1.10 7.76 22.33 0.17 -0.93 16 7 C -0.09 -1.28 4.13 -19.90 -0.08 -1.37 16 8 C 0.09 1.29 5.42 85.56 0.46 1.76 16 9 N -0.54 -10.81 4.80 -900.94 -4.32 -15.14 16 10 C 0.07 1.78 4.57 86.33 0.39 2.17 16 11 C -0.12 -4.08 5.68 30.65 0.17 -3.91 16 12 C 0.15 5.73 2.52 45.07 0.11 5.84 16 13 N -0.75 -33.60 5.08 -446.43 -2.27 -35.87 16 14 C 0.54 31.38 7.71 86.36 0.67 32.04 16 15 O -0.63 -42.21 14.71 -4.32 -0.06 -42.27 16 16 C -0.58 -32.83 9.53 24.83 0.24 -32.60 16 17 H 0.08 4.36 7.86 -2.91 -0.02 4.34 16 18 C 0.03 1.64 5.49 85.30 0.47 2.11 16 19 N -0.82 -50.55 11.85 21.83 0.26 -50.29 16 20 Si 1.00 41.20 29.56 68.60 2.03 43.23 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 24 C -0.11 -2.88 5.57 30.64 0.17 -2.71 16 25 C 0.06 1.30 5.42 86.33 0.47 1.77 16 26 C -0.05 -0.71 9.41 22.54 0.21 -0.50 16 27 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 28 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 29 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 30 H 0.06 0.71 8.02 -2.39 -0.02 0.69 16 31 H 0.11 1.11 8.08 -2.38 -0.02 1.09 16 32 H 0.09 2.07 5.63 -2.39 -0.01 2.05 16 33 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.03 1.53 7.57 -2.39 -0.02 1.51 16 37 H 0.39 15.24 8.58 -92.71 -0.80 14.45 16 38 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.11 1.53 8.12 -2.39 -0.02 1.51 16 43 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -79.49 363.17 1.35 -78.14 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.23 Total: 25.61 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.13 Total: 8.06 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -5.98 Total: -112.77 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.06 Total: -42.27 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -79.49 1.35 -78.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593885639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.380 kcal (2) G-P(sol) polarization free energy of solvation -79.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds