Wall clock time and date at job start Fri Apr 10 2020 22:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48505 * 109.46973 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47082 * 120.00126 * 3 2 1 6 6 H 1.48502 * 109.46939 * 240.00379 * 3 2 1 7 7 C 1.37880 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99761 * 185.61389 * 7 2 1 9 9 C 1.50698 * 119.99592 * 5.61487 * 7 2 1 10 10 C 1.52998 * 115.55023 * 279.42932 * 9 7 2 11 11 N 1.46500 * 109.47221 * 295.27239 * 10 9 7 12 12 C 1.35308 * 125.86894 * 123.94660 * 11 10 9 13 13 C 1.35348 * 106.17926 * 180.02562 * 12 11 10 14 14 C 1.50698 * 126.75498 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46981 * 125.00191 * 14 13 12 16 16 O 1.42901 * 109.47258 * 180.02562 * 15 14 13 17 17 C 1.35899 * 117.00236 * 179.97438 * 16 15 14 18 18 C 1.38722 * 120.05632 * 359.72943 * 17 16 15 19 19 C 1.38148 * 119.94721 * 179.74392 * 18 17 16 20 20 C 1.38272 * 120.05258 * 0.50569 * 19 18 17 21 21 C 1.38266 * 120.10907 * 359.76934 * 20 19 18 22 22 C 1.38149 * 120.05724 * 359.97438 * 21 20 19 23 23 N 1.33780 * 106.49371 * 359.97438 * 13 12 11 24 24 N 1.28635 * 108.88564 * 359.73928 * 23 13 12 25 25 C 1.52999 * 117.49459 * 133.72674 * 9 7 2 26 26 C 1.53001 * 117.50076 * 65.10442 * 9 7 2 27 27 H 0.96998 * 120.00163 * 355.32226 * 1 2 3 28 28 H 1.08996 * 109.46874 * 55.27275 * 10 9 7 29 29 H 1.09001 * 109.47192 * 175.27277 * 10 9 7 30 30 H 1.08005 * 126.91301 * 359.97438 * 12 11 10 31 31 H 1.09002 * 109.47124 * 245.00108 * 14 13 12 32 32 H 1.08993 * 109.46954 * 5.00299 * 14 13 12 33 33 H 1.09002 * 109.47124 * 299.99918 * 15 14 13 34 34 H 1.08993 * 109.47624 * 59.99941 * 15 14 13 35 35 H 1.08011 * 120.03095 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.97805 * 180.27631 * 19 18 17 37 37 H 1.07997 * 119.94107 * 179.74774 * 20 19 18 38 38 H 1.07997 * 119.97174 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.02741 * 179.97438 * 22 21 20 40 40 H 1.08997 * 117.50526 * 359.97438 * 25 9 7 41 41 H 1.09005 * 117.50022 * 145.01992 * 25 9 7 42 42 H 1.09002 * 117.50086 * 214.97133 * 26 9 7 43 43 H 1.08999 * 117.49634 * 0.02562 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0807 -1.1962 0.0910 9 6 1.2565 -2.4959 -0.1288 10 6 0.6182 -3.0199 1.1592 11 7 1.6684 -3.3467 2.1268 12 6 1.7736 -2.8496 3.3809 13 6 2.8801 -3.4138 3.9187 14 6 3.4284 -3.1822 5.3031 15 6 3.5785 -4.5237 6.0232 16 8 4.0979 -4.3041 7.3363 17 6 4.2921 -5.4012 8.1145 18 6 3.9838 -6.6626 7.6264 19 6 4.1870 -7.7768 8.4175 20 6 4.6875 -7.6345 9.6986 21 6 4.9902 -6.3778 10.1894 22 6 4.7937 -5.2610 9.4003 23 7 3.3908 -4.2184 2.9798 24 7 2.6465 -4.1606 1.9322 25 6 1.7995 -3.5279 -1.1193 26 6 0.5165 -2.7591 -1.4418 27 1 -0.4850 0.8372 0.0685 28 1 -0.0361 -2.2551 1.5775 29 1 0.0363 -3.9148 0.9384 30 1 1.1088 -2.1438 3.8567 31 1 4.4019 -2.6970 5.2320 32 1 2.7445 -2.5441 5.8626 33 1 2.6050 -5.0089 6.0944 34 1 4.2624 -5.1619 5.4637 35 1 3.5886 -6.7740 6.6274 36 1 3.9514 -8.7594 8.0365 37 1 4.8419 -8.5063 10.3169 38 1 5.3806 -6.2691 11.1904 39 1 5.0299 -4.2796 9.7842 40 1 2.6974 -3.2652 -1.6785 41 1 1.7020 -4.5806 -0.8534 42 1 -0.4249 -3.3060 -1.3882 43 1 0.5712 -1.9908 -2.2131 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594652789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:07 Heat of formation + Delta-G solvation = 101.690452 kcal Electronic energy + Delta-G solvation = -24545.761707 eV Core-core repulsion = 20980.167324 eV Total energy + Delta-G solvation = -3565.594383 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.59557 -40.17304 -37.60831 -36.99729 -34.03682 -32.53268 -32.15211 -31.17199 -30.12661 -28.75170 -27.09401 -25.55727 -24.42258 -22.65675 -21.91232 -21.62314 -21.17190 -20.55820 -19.26739 -18.37983 -16.75594 -16.29860 -16.14745 -15.92572 -15.74696 -15.42867 -14.79926 -14.63589 -14.25094 -13.87264 -13.75536 -13.59567 -13.49763 -13.12579 -12.99291 -12.19718 -12.05441 -11.83448 -11.77907 -11.71831 -11.18483 -11.08546 -10.97525 -10.89642 -10.81345 -10.67068 -10.39164 -10.21053 -10.03302 -9.29809 -9.18327 -9.02953 -8.65860 -8.60807 -8.36418 -8.33899 -6.26498 -4.33185 1.16126 1.28865 2.29998 2.87234 3.12713 3.19154 3.23915 3.28413 3.31761 3.62770 4.24446 4.64790 4.72072 4.77084 4.93691 4.98656 5.02610 5.05292 5.14765 5.20347 5.25422 5.34435 5.44136 5.51226 5.61506 5.67221 5.74333 5.82437 5.92032 6.01339 6.08607 6.16337 6.24084 6.26511 6.34821 6.35821 6.59049 6.61926 6.66816 6.72179 6.87841 7.11973 7.27934 7.32358 7.39309 7.68274 8.17992 8.70096 9.17699 9.34922 10.81781 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022708 B = 0.002523 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.773614 B =11095.772318 C =11929.930871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.074 3.926 3 Si 0.892 3.108 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.149 3.851 11 N -0.247 5.247 12 C -0.033 4.033 13 C -0.046 4.046 14 C -0.019 4.019 15 C 0.067 3.933 16 O -0.316 6.316 17 C 0.137 3.863 18 C -0.209 4.209 19 C -0.080 4.080 20 C -0.165 4.165 21 C -0.083 4.083 22 C -0.157 4.157 23 N -0.288 5.288 24 N -0.073 5.073 25 C -0.190 4.190 26 C -0.151 4.151 27 H 0.264 0.736 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.181 0.819 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 -9.872 15.837 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.532 4.532 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.028 3.972 11 N -0.039 5.039 12 C -0.186 4.186 13 C -0.186 4.186 14 C -0.059 4.059 15 C -0.008 4.008 16 O -0.230 6.230 17 C 0.091 3.909 18 C -0.227 4.227 19 C -0.099 4.099 20 C -0.183 4.183 21 C -0.102 4.102 22 C -0.175 4.175 23 N -0.155 5.155 24 N -0.053 5.053 25 C -0.227 4.227 26 C -0.189 4.189 27 H 0.074 0.926 28 H 0.129 0.871 29 H 0.088 0.912 30 H 0.199 0.801 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.305 -10.483 14.752 18.397 hybrid contribution -0.392 1.691 0.396 1.780 sum 2.913 -8.793 15.148 17.756 Atomic orbital electron populations 1.69915 1.05836 1.27340 1.48737 1.24975 0.94880 0.99041 0.94072 0.86650 0.79732 0.82710 0.79016 1.21071 1.20107 1.20000 1.20341 0.92897 0.88338 1.51578 0.92336 1.18899 0.98922 0.94531 0.85259 1.22003 0.85543 0.99704 0.89900 1.47432 1.19454 1.26338 1.10659 1.23247 1.02511 1.05335 0.87504 1.21328 0.96817 1.02708 0.97703 1.19502 1.02526 0.95689 0.88142 1.22813 0.98759 0.99044 0.80198 1.86016 1.79623 1.30731 1.26606 1.19049 0.94863 0.85943 0.91049 1.21378 1.07244 0.92262 1.01855 1.20973 0.96899 0.98140 0.93847 1.21043 1.03415 0.97452 0.96424 1.20949 0.98050 0.91931 0.99222 1.20467 1.04849 0.99933 0.92269 1.74947 1.22532 1.20490 0.97483 1.78202 0.96440 1.11793 1.18827 1.22928 0.97672 0.95830 1.06289 1.22625 0.93377 1.01711 1.01226 0.92606 0.87080 0.91159 0.80143 0.89457 0.89453 0.92007 0.90925 0.85223 0.85900 0.86122 0.85558 0.85245 0.90188 0.90923 0.91485 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.69 13.10 55.43 0.73 -21.97 16 2 C 0.07 1.89 5.42 -17.82 -0.10 1.79 16 3 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.49 -12.74 8.71 -34.44 -0.30 -13.04 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.03 0.57 1.32 -155.66 -0.20 0.37 16 10 C 0.15 2.98 6.28 -4.04 -0.03 2.96 16 11 N -0.25 -4.92 3.33 -61.26 -0.20 -5.13 16 12 C -0.03 -0.58 11.49 -17.05 -0.20 -0.77 16 13 C -0.05 -0.79 6.50 -82.77 -0.54 -1.33 16 14 C -0.02 -0.25 6.16 -27.88 -0.17 -0.43 16 15 C 0.07 0.84 4.72 37.16 0.18 1.02 16 16 O -0.32 -4.08 10.14 -19.42 -0.20 -4.28 16 17 C 0.14 1.66 6.69 -39.22 -0.26 1.39 16 18 C -0.21 -2.35 9.04 -39.44 -0.36 -2.70 16 19 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 20 C -0.17 -1.46 10.04 -39.56 -0.40 -1.85 16 21 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 22 C -0.16 -1.65 9.99 -39.43 -0.39 -2.04 16 23 N -0.29 -5.73 12.40 33.29 0.41 -5.32 16 24 N -0.07 -1.54 12.87 60.35 0.78 -0.76 16 25 C -0.19 -4.00 9.86 -26.73 -0.26 -4.26 16 26 C -0.15 -3.23 9.67 -26.73 -0.26 -3.49 16 27 H 0.26 6.57 8.32 -40.82 -0.34 6.23 16 28 H 0.11 2.27 8.07 -51.93 -0.42 1.85 16 29 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.18 2.59 8.06 -52.48 -0.42 2.17 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.09 0.99 8.12 -51.93 -0.42 0.56 16 33 H 0.06 0.74 7.65 -51.93 -0.40 0.34 16 34 H 0.07 0.96 7.67 -51.93 -0.40 0.56 16 35 H 0.13 1.40 6.30 -52.48 -0.33 1.07 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.09 1.96 8.14 -51.93 -0.42 1.53 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -28.67 371.72 -8.15 -36.82 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.16 Total: 4.43 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -4.08 Total: -24.70 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 1.71 Total: -33.18 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.20 Total: -4.28 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.67 -8.15 -36.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594652789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.515 kcal (2) G-P(sol) polarization free energy of solvation -28.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds