Wall clock time and date at job start Fri Apr 10 2020 22:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48505 * 109.46973 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47082 * 120.00126 * 3 2 1 6 6 H 1.48502 * 109.46939 * 240.00379 * 3 2 1 7 7 C 1.37880 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99761 * 185.61389 * 7 2 1 9 9 C 1.50698 * 119.99592 * 5.61487 * 7 2 1 10 10 C 1.52998 * 115.55023 * 279.42932 * 9 7 2 11 11 N 1.46500 * 109.47221 * 295.27239 * 10 9 7 12 12 C 1.35308 * 125.86894 * 123.94660 * 11 10 9 13 13 C 1.35348 * 106.17926 * 180.02562 * 12 11 10 14 14 C 1.50698 * 126.75498 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.46981 * 125.00191 * 14 13 12 16 16 O 1.42901 * 109.47258 * 180.02562 * 15 14 13 17 17 C 1.35899 * 117.00236 * 179.97438 * 16 15 14 18 18 C 1.38722 * 120.05632 * 359.72943 * 17 16 15 19 19 C 1.38148 * 119.94721 * 179.74392 * 18 17 16 20 20 C 1.38272 * 120.05258 * 0.50569 * 19 18 17 21 21 C 1.38266 * 120.10907 * 359.76934 * 20 19 18 22 22 C 1.38149 * 120.05724 * 359.97438 * 21 20 19 23 23 N 1.33780 * 106.49371 * 359.97438 * 13 12 11 24 24 N 1.28635 * 108.88564 * 359.73928 * 23 13 12 25 25 C 1.52999 * 117.49459 * 133.72674 * 9 7 2 26 26 C 1.53001 * 117.50076 * 65.10442 * 9 7 2 27 27 H 0.96998 * 120.00163 * 355.32226 * 1 2 3 28 28 H 1.08996 * 109.46874 * 55.27275 * 10 9 7 29 29 H 1.09001 * 109.47192 * 175.27277 * 10 9 7 30 30 H 1.08005 * 126.91301 * 359.97438 * 12 11 10 31 31 H 1.09002 * 109.47124 * 245.00108 * 14 13 12 32 32 H 1.08993 * 109.46954 * 5.00299 * 14 13 12 33 33 H 1.09002 * 109.47124 * 299.99918 * 15 14 13 34 34 H 1.08993 * 109.47624 * 59.99941 * 15 14 13 35 35 H 1.08011 * 120.03095 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.97805 * 180.27631 * 19 18 17 37 37 H 1.07997 * 119.94107 * 179.74774 * 20 19 18 38 38 H 1.07997 * 119.97174 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.02741 * 179.97438 * 22 21 20 40 40 H 1.08997 * 117.50526 * 359.97438 * 25 9 7 41 41 H 1.09005 * 117.50022 * 145.01992 * 25 9 7 42 42 H 1.09002 * 117.50086 * 214.97133 * 26 9 7 43 43 H 1.08999 * 117.49634 * 0.02562 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0807 -1.1962 0.0910 9 6 1.2565 -2.4959 -0.1288 10 6 0.6182 -3.0199 1.1592 11 7 1.6684 -3.3467 2.1268 12 6 1.7736 -2.8496 3.3809 13 6 2.8801 -3.4138 3.9187 14 6 3.4284 -3.1822 5.3031 15 6 3.5785 -4.5237 6.0232 16 8 4.0979 -4.3041 7.3363 17 6 4.2921 -5.4012 8.1145 18 6 3.9838 -6.6626 7.6264 19 6 4.1870 -7.7768 8.4175 20 6 4.6875 -7.6345 9.6986 21 6 4.9902 -6.3778 10.1894 22 6 4.7937 -5.2610 9.4003 23 7 3.3908 -4.2184 2.9798 24 7 2.6465 -4.1606 1.9322 25 6 1.7995 -3.5279 -1.1193 26 6 0.5165 -2.7591 -1.4418 27 1 -0.4850 0.8372 0.0685 28 1 -0.0361 -2.2551 1.5775 29 1 0.0363 -3.9148 0.9384 30 1 1.1088 -2.1438 3.8567 31 1 4.4019 -2.6970 5.2320 32 1 2.7445 -2.5441 5.8626 33 1 2.6050 -5.0089 6.0944 34 1 4.2624 -5.1619 5.4637 35 1 3.5886 -6.7740 6.6274 36 1 3.9514 -8.7594 8.0365 37 1 4.8419 -8.5063 10.3169 38 1 5.3806 -6.2691 11.1904 39 1 5.0299 -4.2796 9.7842 40 1 2.6974 -3.2652 -1.6785 41 1 1.7020 -4.5806 -0.8534 42 1 -0.4249 -3.3060 -1.3882 43 1 0.5712 -1.9908 -2.2131 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594652789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:07 Heat of formation + Delta-G solvation = 87.982272 kcal Electronic energy + Delta-G solvation = -24546.356139 eV Core-core repulsion = 20980.167324 eV Total energy + Delta-G solvation = -3566.188814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.05263 -41.01211 -38.74138 -38.39324 -35.38032 -34.11737 -33.85832 -31.93981 -31.06948 -29.86984 -28.66787 -27.46512 -25.46596 -23.46314 -23.20615 -22.92781 -22.67023 -21.92143 -20.92849 -19.26064 -18.40081 -17.50008 -17.26518 -17.04954 -16.86329 -16.69334 -16.61104 -15.81113 -15.47011 -15.31628 -14.95984 -14.70784 -14.43977 -14.30367 -14.11142 -13.79363 -13.42755 -13.10370 -13.01186 -12.92114 -12.80439 -12.50356 -12.45484 -12.38578 -12.10159 -11.95364 -11.74656 -11.69728 -11.51862 -11.01399 -10.77255 -10.48266 -10.16817 -9.98267 -9.92945 -9.15135 -8.21379 -6.32282 0.41480 0.51687 0.86300 1.35630 1.39089 1.44884 1.55991 1.69320 2.24645 2.35767 2.87380 3.06532 3.43940 3.53474 3.82045 3.89216 3.99529 4.05140 4.10738 4.12271 4.17348 4.28672 4.35043 4.41897 4.44691 4.51909 4.55577 4.56020 4.65274 4.74364 4.89110 4.94267 4.98449 5.11377 5.14229 5.22112 5.33785 5.40125 5.41969 5.51482 5.57474 5.62416 5.66486 5.88245 5.89517 6.29742 6.45020 6.69649 7.36952 7.70024 8.85571 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022708 B = 0.002523 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.773614 B =11095.772318 C =11929.930871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.044 3.956 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.509 4.509 8 H 0.030 0.970 9 C 0.005 3.995 10 C 0.157 3.843 11 N -0.255 5.255 12 C -0.037 4.037 13 C -0.041 4.041 14 C -0.016 4.016 15 C 0.077 3.923 16 O -0.326 6.326 17 C 0.108 3.892 18 C -0.225 4.225 19 C -0.089 4.089 20 C -0.164 4.164 21 C -0.083 4.083 22 C -0.168 4.168 23 N -0.308 5.308 24 N -0.106 5.106 25 C -0.180 4.180 26 C -0.144 4.144 27 H 0.266 0.734 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.211 0.789 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.138 0.862 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 -10.353 17.793 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.158 4.158 3 Si 0.764 3.236 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.547 4.547 8 H 0.048 0.952 9 C 0.003 3.997 10 C 0.037 3.963 11 N -0.047 5.047 12 C -0.190 4.190 13 C -0.181 4.181 14 C -0.055 4.055 15 C 0.002 3.998 16 O -0.240 6.240 17 C 0.063 3.937 18 C -0.243 4.243 19 C -0.107 4.107 20 C -0.182 4.182 21 C -0.100 4.100 22 C -0.187 4.187 23 N -0.174 5.174 24 N -0.085 5.085 25 C -0.217 4.217 26 C -0.182 4.182 27 H 0.076 0.924 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.228 0.772 31 H 0.105 0.895 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.156 0.844 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.952 -10.977 16.706 20.206 hybrid contribution -0.216 1.794 -0.136 1.812 sum 2.736 -9.182 16.569 19.140 Atomic orbital electron populations 1.69950 1.06242 1.27873 1.48903 1.25404 0.95565 1.00903 0.93949 0.85948 0.78842 0.80447 0.78411 1.20075 1.20326 1.20660 1.20365 0.91784 0.90332 1.52210 0.95185 1.18970 0.99795 0.94017 0.86884 1.21831 0.85381 1.00453 0.88660 1.47452 1.19309 1.26554 1.11377 1.23850 1.03008 1.05353 0.86774 1.21848 0.96321 1.01368 0.98521 1.19578 1.02939 0.96469 0.86495 1.22604 0.98631 0.98323 0.80266 1.85969 1.80098 1.31449 1.26507 1.19355 0.96522 0.86001 0.91806 1.21487 1.08000 0.92737 1.02123 1.21284 0.96667 0.98477 0.94266 1.21438 1.02019 0.98498 0.96228 1.21340 0.97074 0.91393 1.00228 1.20743 1.04849 1.01131 0.91933 1.74905 1.22903 1.21505 0.98042 1.78166 0.97412 1.13199 1.19743 1.22865 0.97081 0.96394 1.05382 1.22577 0.94488 1.01309 0.99865 0.92418 0.87480 0.88929 0.77221 0.89481 0.87001 0.91614 0.92228 0.85694 0.84082 0.83404 0.82660 0.84440 0.91483 0.89309 0.89077 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.33 13.10 21.45 0.28 -45.05 16 2 C 0.04 2.25 5.42 84.66 0.46 2.71 16 3 Si 0.94 41.56 29.54 68.60 2.03 43.58 16 4 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.51 -26.52 8.71 25.60 0.22 -26.29 16 8 H 0.03 1.69 7.82 -2.91 -0.02 1.67 16 9 C 0.00 0.20 1.32 -52.93 -0.07 0.13 16 10 C 0.16 6.15 6.28 86.38 0.54 6.69 16 11 N -0.26 -10.01 3.33 -347.74 -1.16 -11.16 16 12 C -0.04 -1.26 11.49 83.49 0.96 -0.30 16 13 C -0.04 -1.36 6.50 41.59 0.27 -1.09 16 14 C -0.02 -0.40 6.16 29.85 0.18 -0.22 16 15 C 0.08 1.92 4.72 71.98 0.34 2.26 16 16 O -0.33 -8.34 10.14 -92.41 -0.94 -9.28 16 17 C 0.11 2.59 6.69 22.50 0.15 2.74 16 18 C -0.22 -5.00 9.04 22.36 0.20 -4.79 16 19 C -0.09 -1.59 10.04 22.26 0.22 -1.37 16 20 C -0.16 -2.47 10.04 22.28 0.22 -2.25 16 21 C -0.08 -1.27 10.04 22.26 0.22 -1.05 16 22 C -0.17 -3.34 9.99 22.37 0.22 -3.11 16 23 N -0.31 -12.29 12.40 -48.60 -0.60 -12.89 16 24 N -0.11 -4.50 12.87 37.02 0.48 -4.02 16 25 C -0.18 -7.53 9.86 30.59 0.30 -7.23 16 26 C -0.14 -6.07 9.67 30.60 0.30 -5.77 16 27 H 0.27 12.99 8.32 -92.71 -0.77 12.22 16 28 H 0.11 4.26 8.07 -2.39 -0.02 4.24 16 29 H 0.09 3.16 8.10 -2.39 -0.02 3.14 16 30 H 0.21 5.57 8.06 -2.91 -0.02 5.55 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.11 2.30 8.12 -2.39 -0.02 2.28 16 33 H 0.07 1.56 7.65 -2.39 -0.02 1.54 16 34 H 0.06 1.62 7.67 -2.39 -0.02 1.60 16 35 H 0.13 2.77 6.30 -2.90 -0.02 2.75 16 36 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 42 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -61.38 371.72 5.84 -55.54 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 1.00 Total: 22.22 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 4.75 Total: -38.94 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.00 Total: -73.13 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.94 Total: -9.28 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -61.38 5.84 -55.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594652789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.526 kcal (2) G-P(sol) polarization free energy of solvation -61.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds