Wall clock time and date at job start Fri Apr 10 2020 22:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39654 * 120.15214 * 290.92170 * 3 2 1 5 5 C 1.37924 * 119.84794 * 179.97438 * 4 3 2 6 6 C 1.38385 * 120.14962 * 359.74156 * 5 4 3 7 7 C 1.38336 * 120.30512 * 0.50950 * 6 5 4 8 8 C 1.50701 * 119.92386 * 179.76692 * 7 6 5 9 9 N 1.46500 * 109.47445 * 269.72630 * 8 7 6 10 10 C 1.34772 * 120.00206 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00042 * 4.98538 * 10 9 8 12 12 N 1.34778 * 120.00029 * 184.97779 * 10 9 8 13 13 C 1.46931 * 120.62940 * 354.77928 * 12 10 9 14 14 C 1.53195 * 108.77052 * 233.60228 * 13 12 10 15 15 C 1.53037 * 109.31495 * 305.36751 * 14 13 12 16 16 C 1.53033 * 109.54104 * 61.36170 * 15 14 13 17 17 H 1.09006 * 109.49527 * 58.62255 * 16 15 14 18 18 C 1.50704 * 109.49720 * 178.68196 * 16 15 14 19 19 H 1.08001 * 119.99860 * 359.94444 * 18 16 15 20 20 C 1.37876 * 119.99554 * 179.65921 * 18 16 15 21 21 N 1.31513 * 120.00490 * 0.28253 * 20 18 16 22 22 Si 1.86805 * 119.99672 * 180.27650 * 20 18 16 23 23 H 1.48507 * 109.46932 * 90.00233 * 22 20 18 24 24 H 1.48498 * 109.47278 * 210.00263 * 22 20 18 25 25 H 1.48501 * 109.47292 * 330.00813 * 22 20 18 26 26 C 1.46931 * 120.60431 * 174.79269 * 12 10 9 27 27 C 1.37977 * 120.15213 * 359.49075 * 7 6 5 28 28 H 1.08002 * 120.07776 * 359.94825 * 4 3 2 29 29 H 1.07997 * 119.92819 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.84642 * 180.28412 * 6 5 4 31 31 H 1.09004 * 109.46913 * 149.72547 * 8 7 6 32 32 H 1.09002 * 109.46988 * 29.73088 * 8 7 6 33 33 H 0.96997 * 119.99481 * 359.97438 * 9 8 7 34 34 H 1.08994 * 109.58776 * 113.81687 * 13 12 10 35 35 H 1.09003 * 109.58581 * 353.38780 * 13 12 10 36 36 H 1.08994 * 109.49668 * 185.40658 * 14 13 12 37 37 H 1.09004 * 109.52438 * 65.33482 * 14 13 12 38 38 H 1.09000 * 109.45515 * 301.34038 * 15 14 13 39 39 H 1.08998 * 109.45956 * 181.38914 * 15 14 13 40 40 H 0.96996 * 119.99747 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.61485 * 6.62275 * 26 12 10 42 42 H 1.08999 * 109.56047 * 246.19692 * 26 12 10 43 43 H 1.07994 * 120.07541 * 180.23137 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -0.4303 1.1280 5 6 4.6489 -0.4275 1.1209 6 6 5.3374 -0.0041 -0.0023 7 6 4.6487 0.4288 -1.1212 8 6 5.4072 0.8930 -2.3379 9 7 5.6530 2.3339 -2.2399 10 6 6.3194 2.9722 -3.2222 11 8 6.6372 2.3720 -4.2307 12 7 6.6335 4.2758 -3.0866 13 6 6.1584 5.0437 -1.9274 14 6 5.4329 6.2960 -2.4295 15 6 6.3593 7.0772 -3.3641 16 6 6.7175 6.2094 -4.5726 17 1 5.8057 5.9176 -5.0939 18 6 7.6035 6.9910 -5.5082 19 1 7.8827 8.0057 -5.2659 20 6 8.0624 6.4084 -6.6705 21 7 7.7224 5.1728 -6.9656 22 14 9.1670 7.3746 -7.8264 23 1 10.5872 7.1575 -7.4506 24 1 8.9480 6.9136 -9.2210 25 1 8.8440 8.8206 -7.7265 26 6 7.4572 4.9557 -4.0956 27 6 3.2689 0.4313 -1.1279 28 1 2.7335 -0.7645 2.0039 29 1 5.1928 -0.7609 1.9923 30 1 6.4174 -0.0084 -0.0041 31 1 4.8209 0.6845 -3.2329 32 1 6.3590 0.3651 -2.3959 33 1 5.3354 2.8286 -1.4684 34 1 7.0077 5.3362 -1.3100 35 1 5.4711 4.4333 -1.3416 36 1 5.1594 6.9228 -1.5808 37 1 4.5329 6.0034 -2.9704 38 1 7.2695 7.3487 -2.8294 39 1 5.8543 7.9816 -3.7033 40 1 8.0456 4.7629 -7.7832 41 1 7.6267 4.2877 -4.9401 42 1 8.4127 5.2406 -3.6550 43 1 2.7326 0.7661 -2.0034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595457612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:22 Heat of formation + Delta-G solvation = 25.390505 kcal Electronic energy + Delta-G solvation = -25030.949239 eV Core-core repulsion = 21462.046242 eV Total energy + Delta-G solvation = -3568.902997 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20965 -39.47422 -37.04423 -36.68457 -34.73335 -33.36676 -31.95806 -31.72403 -31.26047 -29.68621 -26.51290 -25.03626 -24.31811 -23.99408 -22.14722 -21.79000 -20.11087 -19.20020 -18.50814 -17.44718 -16.72980 -16.20402 -16.10520 -15.79598 -14.86513 -14.74092 -14.51382 -14.38119 -13.96411 -13.72435 -13.60296 -13.53238 -13.33823 -13.19817 -12.81130 -12.59807 -12.55092 -12.54649 -12.06867 -11.90110 -11.74358 -11.45860 -10.98425 -10.88609 -10.50762 -10.40353 -10.21879 -9.86343 -9.61296 -9.40218 -9.24638 -9.08235 -8.91962 -8.80877 -8.40402 -7.63998 -5.96227 -4.05438 0.35130 0.80022 2.32546 2.52940 3.21337 3.32802 3.39895 3.42078 3.48392 3.56644 3.82570 4.28627 4.40167 4.42479 4.48409 4.61298 4.80284 4.93776 5.17651 5.27425 5.33402 5.38758 5.49087 5.55447 5.61238 5.73659 5.81404 5.86182 5.97564 6.12709 6.16481 6.31975 6.34242 6.59075 6.67254 6.73861 6.81131 6.99882 7.04810 7.13563 7.35582 7.50140 7.76115 7.94789 8.08231 8.42968 8.57262 8.98138 9.23687 9.59994 11.08584 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022609 B = 0.002711 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.133283 B =10326.797627 C =10602.320997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.255 3.745 3 C -0.032 4.032 4 C -0.067 4.067 5 C -0.122 4.122 6 C -0.069 4.069 7 C -0.101 4.101 8 C 0.179 3.821 9 N -0.755 5.755 10 C 0.700 3.300 11 O -0.581 6.581 12 N -0.622 5.622 13 C 0.116 3.884 14 C -0.134 4.134 15 C -0.110 4.110 16 C 0.039 3.961 17 H 0.029 0.971 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.128 3.872 27 C -0.051 4.051 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.392 0.608 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.263 0.737 41 H 0.124 0.876 42 H 0.039 0.961 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.948 -10.163 18.390 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.061 4.061 3 C -0.036 4.036 4 C -0.087 4.087 5 C -0.140 4.140 6 C -0.088 4.088 7 C -0.102 4.102 8 C 0.055 3.945 9 N -0.416 5.416 10 C 0.401 3.599 11 O -0.457 6.457 12 N -0.358 5.358 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.047 0.953 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.515 5.515 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.200 1.200 26 C 0.008 3.992 27 C -0.072 4.072 28 H 0.150 0.850 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.228 0.772 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.142 0.858 42 H 0.057 0.943 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.413 -10.748 17.456 21.479 hybrid contribution 0.800 0.759 -0.183 1.117 sum -5.613 -9.989 17.273 20.728 Atomic orbital electron populations 1.81274 1.12081 1.08522 1.07313 1.25705 0.92662 0.93809 0.93904 1.15971 0.84322 1.06658 0.96633 1.21222 0.94485 0.96478 0.96556 1.21119 0.93532 1.00477 0.98857 1.21443 1.00885 0.94626 0.91887 1.19937 0.93142 1.00712 0.96383 1.19949 0.99337 0.81061 0.94199 1.45360 1.63237 1.08297 1.24671 1.15946 0.78964 0.82064 0.82894 1.90944 1.59705 1.66257 1.28843 1.47791 1.54973 1.07509 1.25544 1.21488 0.97682 0.93329 0.88310 1.21948 0.99402 0.96373 0.99494 1.21611 0.97443 0.98423 0.97264 1.18982 0.96459 0.91269 0.91292 0.95331 1.21074 1.31011 0.99338 1.04590 0.92424 1.25057 0.96243 0.94974 0.97767 1.69896 1.44177 1.12360 1.25103 0.86612 0.80981 0.80210 0.80296 1.20664 1.21235 1.19987 1.22194 0.90574 0.96641 0.89801 1.21207 0.93700 0.95370 0.96911 0.84964 0.84675 0.84766 0.90571 0.90599 0.77228 0.92150 0.92187 0.92363 0.92204 0.93212 0.93096 0.92671 0.85840 0.94267 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.08 18.54 41.84 0.78 -4.30 16 2 C 0.25 2.46 15.33 -22.47 -0.34 2.11 16 3 C -0.03 -0.24 5.73 -106.93 -0.61 -0.86 16 4 C -0.07 -0.37 9.76 -39.17 -0.38 -0.75 16 5 C -0.12 -0.60 10.03 -39.64 -0.40 -1.00 16 6 C -0.07 -0.43 9.69 -39.49 -0.38 -0.81 16 7 C -0.10 -0.80 5.24 -104.68 -0.55 -1.35 16 8 C 0.18 1.98 5.80 -5.19 -0.03 1.95 16 9 N -0.76 -10.17 5.46 -66.41 -0.36 -10.53 16 10 C 0.70 13.59 8.29 -86.92 -0.72 12.86 16 11 O -0.58 -14.07 15.77 5.28 0.08 -13.99 16 12 N -0.62 -12.09 2.97 -178.49 -0.53 -12.62 16 13 C 0.12 1.71 6.39 -3.71 -0.02 1.69 16 14 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 15 C -0.11 -2.14 5.11 -26.69 -0.14 -2.28 16 16 C 0.04 0.96 2.25 -91.66 -0.21 0.75 16 17 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.52 -14.04 8.57 -34.44 -0.30 -14.34 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 21 N -0.88 -25.57 11.39 55.43 0.63 -24.94 16 22 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.13 3.07 5.41 -3.71 -0.02 3.05 16 27 C -0.05 -0.40 9.41 -39.17 -0.37 -0.77 16 28 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 29 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 30 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.39 4.31 5.95 -40.82 -0.24 4.07 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.69 5.65 -51.93 -0.29 0.40 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.12 3.48 5.11 -51.93 -0.27 3.22 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -33.28 361.51 -9.53 -42.82 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.83 Total: 2.32 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -4.73 Total: -0.35 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.51 Total: -52.41 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.08 Total: -13.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.28 -9.53 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595457612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.206 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds