Wall clock time and date at job start Fri Apr 10 2020 22:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39632 * 120.15050 * 53.63538 * 3 2 1 5 5 C 1.37956 * 119.84506 * 180.02562 * 4 3 2 6 6 C 1.38360 * 120.15204 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.84579 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47368 * 345.71227 * 7 6 5 9 9 C 1.50703 * 109.47227 * 105.71917 * 7 6 5 10 10 N 1.34775 * 119.99476 * 272.13877 * 9 7 6 11 11 O 1.21274 * 120.00269 * 92.13482 * 9 7 6 12 12 N 1.46900 * 109.46890 * 225.71685 * 7 6 5 13 13 C 1.46852 * 111.00127 * 181.24035 * 12 7 6 14 14 C 1.53031 * 109.52361 * 174.16098 * 13 12 7 15 15 C 1.53119 * 109.28218 * 59.17725 * 14 13 12 16 16 C 1.53115 * 109.15924 * 302.34751 * 15 14 13 17 17 H 1.09009 * 109.49999 * 297.71246 * 16 15 14 18 18 C 1.50701 * 109.53579 * 177.61502 * 16 15 14 19 19 H 1.07998 * 120.00044 * 240.17128 * 18 16 15 20 20 C 1.37882 * 120.00006 * 60.17498 * 18 16 15 21 21 N 1.31511 * 119.99928 * 359.97438 * 20 18 16 22 22 Si 1.86795 * 119.99973 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47253 * 59.99884 * 22 20 18 24 24 H 1.48498 * 109.47379 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47263 * 299.99893 * 22 20 18 26 26 C 1.46850 * 111.00332 * 57.02867 * 12 7 6 27 27 C 1.38366 * 120.30491 * 0.23466 * 6 5 4 28 28 C 1.37949 * 120.14830 * 359.49115 * 27 6 5 29 29 H 1.08001 * 120.08014 * 0.03845 * 4 3 2 30 30 H 1.08000 * 119.92123 * 179.97438 * 5 4 3 31 31 H 0.97003 * 120.00058 * 180.02562 * 10 9 7 32 32 H 0.97002 * 120.00459 * 359.71364 * 10 9 7 33 33 H 1.09003 * 109.45603 * 294.17574 * 13 12 7 34 34 H 1.08996 * 109.45935 * 54.13719 * 13 12 7 35 35 H 1.09001 * 109.50525 * 299.23546 * 14 13 12 36 36 H 1.09004 * 109.53471 * 179.13958 * 14 13 12 37 37 H 1.09002 * 109.52215 * 182.43695 * 15 14 13 38 38 H 1.09003 * 109.52231 * 62.24995 * 15 14 13 39 39 H 0.97007 * 120.00020 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.45638 * 305.85698 * 26 12 7 41 41 H 1.08994 * 109.46206 * 65.83210 * 26 12 7 42 42 H 1.07994 * 119.92250 * 179.71980 * 27 6 5 43 43 H 1.08004 * 120.07590 * 180.25758 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -0.7149 -0.9723 5 6 4.6491 -0.7104 -0.9660 6 6 5.3374 0.0006 0.0010 7 6 6.8444 0.0003 0.0016 8 1 7.2079 -0.7941 -0.6501 9 6 7.3472 1.3300 -0.4985 10 7 7.5314 1.5274 -1.8189 11 8 7.5861 2.2225 0.2871 12 7 7.3333 -0.2254 1.3684 13 6 8.8010 -0.2029 1.4127 14 6 9.2702 -0.2951 2.8664 15 6 8.7422 -1.5915 3.4868 16 6 7.2146 -1.6119 3.3844 17 1 6.8006 -0.7790 3.9530 18 6 6.6895 -2.9106 3.9398 19 1 6.1202 -3.5770 3.3087 20 6 6.9357 -3.2482 5.2538 21 7 7.6293 -2.4370 6.0222 22 14 6.2855 -4.8584 5.9420 23 1 6.8519 -5.9922 5.1681 24 1 6.6838 -4.9844 7.3670 25 1 4.8042 -4.8790 5.8379 26 6 6.8049 -1.4815 1.9157 27 6 4.6484 0.7075 0.9706 28 6 3.2690 0.7162 0.9728 29 1 2.7336 -1.2705 -1.7276 30 1 5.1931 -1.2638 -1.7172 31 1 7.8554 2.3831 -2.1409 32 1 7.3442 0.8122 -2.4470 33 1 9.1943 -1.0493 0.8497 34 1 9.1633 0.7260 0.9722 35 1 8.8886 0.5583 3.4268 36 1 10.3598 -0.2937 2.8985 37 1 9.0377 -1.6405 4.5349 38 1 9.1546 -2.4463 2.9508 39 1 7.8022 -2.6743 6.9467 40 1 5.7175 -1.4812 1.8405 41 1 7.2077 -2.3218 1.3505 42 1 5.1919 1.2566 1.7251 43 1 2.7324 1.2717 1.7277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595619708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:39 Heat of formation + Delta-G solvation = 18.828564 kcal Electronic energy + Delta-G solvation = -26126.166506 eV Core-core repulsion = 22556.978962 eV Total energy + Delta-G solvation = -3569.187544 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53436 -38.98112 -37.69843 -36.49938 -34.14445 -33.62436 -32.47846 -31.19566 -30.62352 -29.88777 -27.16567 -25.00484 -23.35880 -22.89614 -22.36112 -21.34320 -20.08021 -18.98139 -18.66245 -17.51312 -16.85093 -16.48966 -15.94482 -15.55527 -14.86690 -14.67175 -14.49337 -14.17808 -14.08267 -13.99928 -13.57249 -13.42897 -13.21822 -12.99760 -12.81080 -12.56812 -12.36306 -12.24935 -12.11460 -11.68742 -11.33254 -11.13983 -10.93622 -10.74190 -10.67671 -10.13548 -10.03492 -9.84314 -9.71156 -9.47923 -9.12471 -9.03893 -8.81515 -8.67757 -8.29844 -7.81283 -5.97039 -4.03372 0.62142 1.28320 2.57184 2.60303 2.86393 3.32418 3.35057 3.37715 3.40566 3.74419 3.82074 4.28714 4.45996 4.65199 4.76254 4.79952 4.90377 5.16694 5.25667 5.33320 5.45927 5.62765 5.66425 5.75316 5.92570 6.02447 6.08035 6.21112 6.24692 6.33125 6.47023 6.48993 6.67060 6.71899 6.73935 6.75187 6.91513 7.16610 7.20457 7.36859 7.38352 7.54592 7.67463 7.76693 8.07222 8.16980 8.26295 8.46729 9.00225 9.61016 11.08838 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.005155 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.447003 B = 5430.628169 C = 7644.569192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.260 3.740 3 C -0.032 4.032 4 C -0.074 4.074 5 C -0.114 4.114 6 C -0.045 4.045 7 C 0.102 3.898 8 H 0.063 0.937 9 C 0.526 3.474 10 N -0.859 5.859 11 O -0.511 6.511 12 N -0.511 5.511 13 C 0.061 3.939 14 C -0.114 4.114 15 C -0.112 4.112 16 C 0.058 3.942 17 H 0.036 0.964 18 C -0.515 4.515 19 H 0.052 0.948 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.888 3.112 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.067 3.933 27 C -0.075 4.075 28 C -0.070 4.070 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.400 0.600 32 H 0.399 0.601 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.029 0.971 39 H 0.260 0.740 40 H 0.066 0.934 41 H 0.021 0.979 42 H 0.149 0.851 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 5.602 -17.250 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.055 4.055 3 C -0.036 4.036 4 C -0.094 4.094 5 C -0.133 4.133 6 C -0.047 4.047 7 C -0.010 4.010 8 H 0.081 0.919 9 C 0.309 3.691 10 N -0.424 5.424 11 O -0.384 6.384 12 N -0.236 5.236 13 C -0.067 4.067 14 C -0.152 4.152 15 C -0.150 4.150 16 C 0.039 3.961 17 H 0.054 0.946 18 C -0.554 4.554 19 H 0.071 0.929 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.716 3.284 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.059 4.059 27 C -0.093 4.093 28 C -0.091 4.091 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.231 0.769 32 H 0.227 0.773 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.167 0.833 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.211 6.468 -16.074 17.467 hybrid contribution 0.492 -1.718 -0.587 1.881 sum -1.719 4.750 -16.661 17.410 Atomic orbital electron populations 1.81234 1.12154 1.08629 1.08156 1.25768 0.92720 0.93481 0.93494 1.16038 0.84148 1.03588 0.99785 1.21012 0.93926 0.97324 0.97167 1.20910 0.93650 0.99639 0.99090 1.19650 0.93429 0.96459 0.95148 1.20501 0.92038 0.94493 0.93962 0.91904 1.20369 0.76823 0.89714 0.82198 1.43898 1.71455 1.19149 1.07935 1.90763 1.48778 1.43961 1.54917 1.61917 1.09297 1.37922 1.14482 1.22117 0.86488 0.99097 0.98954 1.21632 0.98231 1.01258 0.94053 1.21679 0.98539 0.92454 1.02297 1.18637 0.92133 0.97114 0.88187 0.94588 1.21066 1.34011 1.04387 0.95912 0.92940 1.24904 0.95098 0.96669 0.96971 1.69878 1.39398 1.36279 1.06977 0.86725 0.79403 0.84255 0.77979 1.20422 1.21340 1.20312 1.22431 0.98792 0.85789 0.98904 1.21180 0.92974 0.97412 0.97721 1.21250 0.94320 0.96982 0.96526 0.85043 0.85039 0.76886 0.77343 0.95985 0.91706 0.91763 0.93474 0.89058 0.95195 0.92990 0.91594 0.96112 0.83286 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.17 18.54 41.84 0.78 -5.39 16 2 C 0.26 3.23 15.33 -22.48 -0.34 2.89 16 3 C -0.03 -0.35 5.73 -106.93 -0.61 -0.97 16 4 C -0.07 -0.68 9.76 -39.16 -0.38 -1.06 16 5 C -0.11 -1.06 9.65 -39.64 -0.38 -1.44 16 6 C -0.05 -0.54 3.51 -104.53 -0.37 -0.90 16 7 C 0.10 1.31 2.07 -70.02 -0.14 1.17 16 8 H 0.06 0.68 7.93 -51.93 -0.41 0.27 16 9 C 0.53 6.58 6.08 -10.98 -0.07 6.51 16 10 N -0.86 -6.58 8.87 31.22 0.28 -6.30 16 11 O -0.51 -8.58 16.35 5.56 0.09 -8.49 16 12 N -0.51 -8.59 3.73 -229.48 -0.86 -9.45 16 13 C 0.06 1.03 5.14 -3.83 -0.02 1.01 16 14 C -0.11 -2.19 6.09 -26.65 -0.16 -2.35 16 15 C -0.11 -2.54 5.03 -26.61 -0.13 -2.68 16 16 C 0.06 1.38 2.26 -91.70 -0.21 1.17 16 17 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 18 C -0.51 -13.57 8.56 -34.44 -0.29 -13.87 16 19 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 20 C 0.07 1.76 5.31 -17.82 -0.09 1.66 16 21 N -0.89 -24.78 11.36 55.43 0.63 -24.15 16 22 Si 0.89 20.90 29.54 -169.99 -5.02 15.87 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.07 1.30 4.37 -3.84 -0.02 1.28 16 27 C -0.07 -0.98 8.49 -39.64 -0.34 -1.31 16 28 C -0.07 -0.81 9.76 -39.17 -0.38 -1.20 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.13 0.84 7.99 -52.49 -0.42 0.42 16 31 H 0.40 2.61 8.93 -40.82 -0.36 2.24 16 32 H 0.40 1.83 8.83 -40.82 -0.36 1.47 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 1.07 6.16 -51.93 -0.32 0.75 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 2.36 6.16 -51.93 -0.32 2.04 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.07 1.26 6.30 -51.93 -0.33 0.94 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.15 2.23 7.88 -52.49 -0.41 1.82 16 43 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -31.60 358.04 -8.52 -40.12 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.86 Total: 2.48 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -3.95 Total: -10.08 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.83 Total: -45.29 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.60 -8.52 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595619708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.949 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds