Wall clock time and date at job start Fri Apr 10 2020 22:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39626 * 120.15220 * 343.44664 * 3 2 1 5 5 C 1.37952 * 119.84861 * 180.02562 * 4 3 2 6 6 C 1.38360 * 120.14670 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.84665 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47086 * 20.00345 * 7 6 5 9 9 C 1.50697 * 109.47357 * 260.00274 * 7 6 5 10 10 N 1.34776 * 119.99955 * 59.99830 * 9 7 6 11 11 O 1.21281 * 119.99959 * 240.00014 * 9 7 6 12 12 N 1.46902 * 109.47012 * 140.00050 * 7 6 5 13 13 C 1.46846 * 111.00121 * 304.21258 * 12 7 6 14 14 C 1.53030 * 109.52435 * 174.16395 * 13 12 7 15 15 C 1.53203 * 109.30370 * 59.17688 * 14 13 12 16 16 C 1.53123 * 109.11533 * 302.37368 * 15 14 13 17 17 H 1.09002 * 109.50371 * 297.67165 * 16 15 14 18 18 C 1.50698 * 109.50354 * 177.59409 * 16 15 14 19 19 H 1.08003 * 120.00069 * 240.07770 * 18 16 15 20 20 C 1.37878 * 119.99970 * 60.07355 * 18 16 15 21 21 N 1.31514 * 119.99929 * 0.02562 * 20 18 16 22 22 Si 1.86796 * 119.99930 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47211 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47098 * 120.00701 * 22 20 18 25 25 H 1.48500 * 109.47492 * 240.00505 * 22 20 18 26 26 C 1.46856 * 110.99619 * 180.02562 * 12 7 6 27 27 C 1.38361 * 120.30995 * 0.27874 * 6 5 4 28 28 C 1.37956 * 120.14995 * 359.48594 * 27 6 5 29 29 H 1.08000 * 120.08067 * 0.04620 * 4 3 2 30 30 H 1.07996 * 119.92695 * 179.97438 * 5 4 3 31 31 H 0.96996 * 120.00328 * 0.02562 * 10 9 7 32 32 H 0.97000 * 119.99986 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.46012 * 294.17710 * 13 12 7 34 34 H 1.08994 * 109.46057 * 54.14289 * 13 12 7 35 35 H 1.08997 * 109.50569 * 179.12357 * 14 13 12 36 36 H 1.09007 * 109.50504 * 299.19535 * 14 13 12 37 37 H 1.08994 * 109.57907 * 182.46159 * 15 14 13 38 38 H 1.08997 * 109.51203 * 62.24423 * 15 14 13 39 39 H 0.97004 * 119.99788 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.46462 * 65.82793 * 26 12 7 41 41 H 1.09001 * 109.45242 * 305.84772 * 26 12 7 42 42 H 1.07996 * 119.92845 * 179.72432 * 27 6 5 43 43 H 1.07994 * 120.07829 * 180.25852 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -1.1563 0.3440 5 6 4.6494 -1.1486 0.3424 6 6 5.3374 0.0021 0.0005 7 6 6.8444 0.0032 0.0016 8 1 7.2085 -1.0224 -0.0595 9 6 7.3454 0.6392 1.2726 10 7 7.0193 0.1063 2.4668 11 8 8.0420 1.6307 1.2209 12 7 7.3343 0.7664 -1.1541 13 6 6.7843 0.2346 -2.4075 14 6 7.1972 1.1384 -3.5713 15 6 8.7261 1.1986 -3.6480 16 6 9.2755 1.7094 -2.3131 17 1 8.9123 2.7213 -2.1334 18 6 10.7817 1.7162 -2.3584 19 1 11.3459 1.1243 -1.6528 20 6 11.4397 2.4779 -3.3007 21 7 10.7527 3.1989 -4.1596 22 14 13.3068 2.4868 -3.3564 23 1 13.8381 1.5995 -2.2908 24 1 13.7649 1.9975 -4.6815 25 1 13.8019 3.8703 -3.1415 26 6 8.8024 0.7885 -1.1860 27 6 4.6483 1.1537 -0.3364 28 6 3.2688 1.1585 -0.3436 29 1 2.7341 -2.0554 0.6104 30 1 5.1935 -2.0426 0.6087 31 1 6.4625 -0.6869 2.5082 32 1 7.3415 0.5158 3.2849 33 1 7.1689 -0.7715 -2.5748 34 1 5.6969 0.2013 -2.3415 35 1 6.8019 0.7349 -4.5035 36 1 6.8007 2.1412 -3.4118 37 1 9.0253 1.8757 -4.4480 38 1 9.1202 0.2020 -3.8466 39 1 11.2157 3.7351 -4.8224 40 1 9.1771 -0.2202 -1.3593 41 1 9.1807 1.1578 -0.2327 42 1 5.1915 2.0496 -0.5979 43 1 2.7321 2.0568 -0.6108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595619709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:41 Heat of formation + Delta-G solvation = 24.544957 kcal Electronic energy + Delta-G solvation = -26004.395755 eV Core-core repulsion = 22435.456092 eV Total energy + Delta-G solvation = -3568.939663 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61952 -39.06308 -37.61955 -36.66515 -34.23558 -33.56180 -32.28268 -31.36886 -30.87665 -29.69371 -27.18971 -24.95209 -23.34578 -23.08829 -22.44693 -21.20534 -20.09385 -19.16644 -18.62722 -17.44603 -16.89510 -16.27315 -16.14630 -15.49934 -14.83363 -14.72654 -14.46811 -14.33326 -14.19819 -14.04781 -13.85942 -13.63916 -13.10637 -13.04852 -12.81395 -12.64264 -12.39782 -12.19365 -12.06906 -11.62632 -11.43895 -11.30398 -10.92101 -10.68959 -10.61011 -10.19751 -10.00711 -9.73581 -9.64004 -9.37444 -9.28726 -9.00478 -8.82835 -8.53472 -8.24667 -7.76551 -5.91328 -3.96079 0.44533 1.07584 2.40525 2.62099 2.77210 3.33944 3.40386 3.42026 3.45864 3.59975 3.62411 4.30465 4.47952 4.51660 4.59797 4.67414 4.96648 5.08299 5.14945 5.32676 5.39107 5.44661 5.63217 5.72925 5.79519 5.87905 6.03240 6.07227 6.23478 6.30122 6.41649 6.54777 6.59481 6.69931 6.75707 6.83473 7.10468 7.21250 7.22453 7.28651 7.42761 7.59823 7.75972 7.83234 8.18185 8.23971 8.39667 8.55465 9.07883 9.67468 11.14917 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.003470 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.854076 B = 8066.214658 C = 8878.816956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.258 3.742 3 C -0.034 4.034 4 C -0.071 4.071 5 C -0.120 4.120 6 C -0.045 4.045 7 C 0.098 3.902 8 H 0.071 0.929 9 C 0.523 3.477 10 N -0.859 5.859 11 O -0.498 6.498 12 N -0.512 5.512 13 C 0.060 3.940 14 C -0.115 4.115 15 C -0.113 4.113 16 C 0.060 3.940 17 H 0.036 0.964 18 C -0.509 4.509 19 H 0.052 0.948 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.055 3.945 27 C -0.083 4.083 28 C -0.070 4.070 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.396 0.604 32 H 0.401 0.599 33 H 0.024 0.976 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.029 0.971 39 H 0.258 0.742 40 H 0.012 0.988 41 H 0.091 0.909 42 H 0.150 0.850 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.184 -10.109 10.186 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.057 4.057 3 C -0.038 4.038 4 C -0.091 4.091 5 C -0.138 4.138 6 C -0.046 4.046 7 C -0.014 4.014 8 H 0.089 0.911 9 C 0.306 3.694 10 N -0.425 5.425 11 O -0.370 6.370 12 N -0.237 5.237 13 C -0.068 4.068 14 C -0.153 4.153 15 C -0.151 4.151 16 C 0.041 3.959 17 H 0.054 0.946 18 C -0.547 4.547 19 H 0.071 0.929 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.211 1.211 26 C -0.071 4.071 27 C -0.101 4.101 28 C -0.091 4.091 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.224 0.776 32 H 0.232 0.768 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.031 0.969 41 H 0.109 0.891 42 H 0.167 0.833 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.609 -8.840 9.836 19.705 hybrid contribution 1.580 -1.175 0.123 1.973 sum -13.029 -10.014 9.959 19.215 Atomic orbital electron populations 1.81256 1.12153 1.07561 1.08976 1.25778 0.92722 0.93644 0.93551 1.16039 0.84144 0.96267 1.07307 1.21046 0.93928 0.96599 0.97577 1.20967 0.93631 0.97948 1.01281 1.19854 0.94020 0.93878 0.96877 1.20507 0.91130 0.97355 0.92395 0.91117 1.20254 0.80016 0.84307 0.84869 1.43833 1.56680 1.33665 1.08272 1.90795 1.35577 1.24337 1.86333 1.61945 1.11787 1.50413 0.99551 1.22146 0.98232 0.96407 0.89967 1.21665 0.99866 0.99041 0.94722 1.21706 0.90234 1.00063 1.03062 1.18604 0.94283 0.94490 0.88518 0.94591 1.21169 0.91323 1.26834 1.15419 0.92932 1.24917 0.97905 0.95365 0.95703 1.69899 1.34684 1.29186 1.19050 0.86595 0.86314 0.77746 0.77659 1.19917 1.21208 1.21082 1.22693 0.82274 0.98501 1.03632 1.21220 0.92934 0.99298 0.96690 1.21262 0.94278 0.96713 0.96833 0.84973 0.84855 0.77588 0.76798 0.95748 0.91925 0.93454 0.91978 0.89092 0.95258 0.93222 0.96930 0.89144 0.83250 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.25 18.54 41.84 0.78 -4.48 16 2 C 0.26 2.60 15.33 -22.47 -0.34 2.26 16 3 C -0.03 -0.29 5.73 -106.93 -0.61 -0.90 16 4 C -0.07 -0.48 9.76 -39.17 -0.38 -0.86 16 5 C -0.12 -0.83 9.48 -39.64 -0.38 -1.21 16 6 C -0.04 -0.44 3.47 -104.53 -0.36 -0.80 16 7 C 0.10 1.24 2.09 -70.02 -0.15 1.10 16 8 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 9 C 0.52 7.08 7.08 -10.99 -0.08 7.00 16 10 N -0.86 -7.29 8.77 31.22 0.27 -7.01 16 11 O -0.50 -9.40 14.68 5.56 0.08 -9.31 16 12 N -0.51 -8.61 3.66 -229.47 -0.84 -9.45 16 13 C 0.06 0.95 5.07 -3.84 -0.02 0.93 16 14 C -0.12 -2.13 6.09 -26.61 -0.16 -2.29 16 15 C -0.11 -2.60 5.03 -26.56 -0.13 -2.74 16 16 C 0.06 1.50 2.26 -91.69 -0.21 1.29 16 17 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 18 C -0.51 -14.08 8.56 -34.44 -0.29 -14.37 16 19 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 21 N -0.89 -25.45 11.36 55.43 0.63 -24.82 16 22 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.05 1.15 4.29 -3.83 -0.02 1.14 16 27 C -0.08 -0.87 8.10 -39.64 -0.32 -1.19 16 28 C -0.07 -0.62 9.76 -39.16 -0.38 -1.00 16 29 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 30 H 0.13 0.60 8.03 -52.49 -0.42 0.17 16 31 H 0.40 2.09 8.55 -40.82 -0.35 1.75 16 32 H 0.40 3.03 8.93 -40.82 -0.36 2.67 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.85 5.97 -51.93 -0.31 0.54 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 37 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 2.06 5.24 -51.93 -0.27 1.78 16 42 H 0.15 1.86 7.71 -52.49 -0.40 1.45 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -32.77 354.89 -8.47 -41.24 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.78 Total: 2.05 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -3.93 Total: -10.01 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.84 Total: -45.77 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.77 -8.47 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595619709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.783 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds