Wall clock time and date at job start Fri Apr 10 2020 22:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14769 * 260.27396 * 3 2 1 5 5 C 1.37950 * 119.84566 * 179.78818 * 4 3 2 6 6 C 1.38364 * 120.14941 * 0.49473 * 5 4 3 7 7 C 1.50696 * 119.84557 * 179.76329 * 6 5 4 8 8 H 1.09001 * 109.47098 * 159.98008 * 7 6 5 9 9 C 1.50703 * 109.47137 * 279.97373 * 7 6 5 10 10 N 1.34780 * 120.00001 * 300.00436 * 9 7 6 11 11 O 1.21280 * 119.99830 * 120.00046 * 9 7 6 12 12 N 1.46890 * 109.47524 * 39.97696 * 7 6 5 13 13 C 1.46850 * 111.00368 * 56.04465 * 12 7 6 14 14 C 1.53029 * 109.52684 * 185.84279 * 13 12 7 15 15 C 1.53126 * 109.27618 * 300.81793 * 14 13 12 16 16 C 1.53115 * 109.15770 * 57.65943 * 15 14 13 17 17 H 1.08997 * 109.50804 * 62.28310 * 16 15 14 18 18 C 1.50705 * 109.50182 * 182.36481 * 16 15 14 19 19 H 1.07996 * 120.00185 * 119.99427 * 18 16 15 20 20 C 1.37878 * 119.99869 * 299.99886 * 18 16 15 21 21 N 1.31515 * 119.99922 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00165 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46871 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47210 * 119.99877 * 22 20 18 25 25 H 1.48493 * 109.47520 * 239.99799 * 22 20 18 26 26 C 1.46846 * 111.00325 * 180.25487 * 12 7 6 27 27 C 1.38364 * 120.30575 * 359.73795 * 6 5 4 28 28 C 1.37946 * 120.14920 * 0.02562 * 27 6 5 29 29 H 1.08004 * 120.07795 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.92773 * 180.20934 * 5 4 3 31 31 H 0.96993 * 119.99795 * 359.97438 * 10 9 7 32 32 H 0.97002 * 119.99519 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.46102 * 305.85912 * 13 12 7 34 34 H 1.09004 * 109.46153 * 65.81968 * 13 12 7 35 35 H 1.08994 * 109.50687 * 60.76229 * 14 13 12 36 36 H 1.09004 * 109.50272 * 180.84256 * 14 13 12 37 37 H 1.09000 * 109.52047 * 177.56067 * 15 14 13 38 38 H 1.08998 * 109.52356 * 297.75110 * 15 14 13 39 39 H 0.97000 * 119.99951 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.46258 * 294.17639 * 26 12 7 41 41 H 1.09000 * 109.46439 * 54.14266 * 26 12 7 42 42 H 1.07993 * 119.92708 * 179.97438 * 27 6 5 43 43 H 1.08003 * 120.07667 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2049 1.1901 5 6 4.6486 0.2000 1.1837 6 6 5.3374 0.0033 -0.0002 7 6 6.8443 0.0045 -0.0002 8 1 7.2081 -0.5008 -0.8948 9 6 7.3455 1.4257 0.0127 10 7 7.0192 2.2645 -0.9906 11 8 8.0425 1.8147 0.9258 12 7 7.3346 -0.6984 1.1928 13 6 6.7893 -2.0601 1.2627 14 6 7.2020 -2.7091 2.5856 15 6 8.7302 -2.7461 2.6754 16 6 9.2755 -1.3207 2.5517 17 1 8.9087 -0.7173 3.3820 18 6 10.7818 -1.3540 2.5808 19 1 11.3467 -0.9758 1.7416 20 6 11.4389 -1.8673 3.6789 21 7 10.7511 -2.3274 4.7010 22 14 13.3061 -1.9092 3.7148 23 1 13.8384 -1.3360 2.4525 24 1 13.7971 -1.1104 4.8663 25 1 13.7671 -3.3138 3.8543 26 6 8.8025 -0.7119 1.2296 27 6 4.6489 -0.1949 -1.1839 28 6 3.2694 -0.1972 -1.1910 29 1 2.7327 0.3627 2.1141 30 1 5.1923 0.3545 2.1040 31 1 6.4621 1.9533 -1.7210 32 1 7.3415 3.1793 -0.9821 33 1 5.7017 -2.0193 1.2019 34 1 7.1773 -2.6498 0.4321 35 1 6.8026 -2.1276 3.4165 36 1 6.8096 -3.7251 2.6306 37 1 9.0285 -3.1682 3.6351 38 1 9.1278 -3.3597 1.8671 39 1 11.2134 -2.6888 5.4734 40 1 9.1812 -1.3079 0.3993 41 1 9.1774 0.3082 1.1449 42 1 5.1926 -0.3473 -2.1044 43 1 2.7332 -0.3516 -2.1157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595619710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:43 Heat of formation + Delta-G solvation = 24.741277 kcal Electronic energy + Delta-G solvation = -26005.217912 eV Core-core repulsion = 22436.286762 eV Total energy + Delta-G solvation = -3568.931150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62000 -39.06531 -37.62031 -36.66700 -34.23711 -33.56334 -32.28330 -31.36822 -30.87743 -29.69313 -27.18976 -24.95284 -23.34529 -23.08785 -22.44421 -21.20658 -20.09499 -19.16575 -18.62669 -17.44524 -16.89529 -16.27390 -16.14550 -15.50166 -14.83264 -14.72460 -14.46676 -14.33392 -14.20093 -14.05040 -13.85961 -13.63774 -13.10692 -13.04878 -12.81316 -12.64234 -12.39876 -12.19499 -12.06738 -11.62697 -11.43895 -11.30260 -10.92106 -10.69018 -10.60934 -10.19998 -10.00441 -9.73441 -9.64021 -9.37318 -9.28660 -9.00402 -8.82658 -8.53109 -8.24635 -7.76436 -5.91258 -3.96041 0.44594 1.07701 2.40628 2.62091 2.77185 3.33967 3.40362 3.42050 3.45888 3.59945 3.62566 4.30430 4.48069 4.51693 4.59863 4.67446 4.96531 5.08406 5.15064 5.32710 5.39134 5.44727 5.63269 5.73024 5.79589 5.88001 6.03316 6.07293 6.23523 6.30247 6.41767 6.54891 6.59558 6.70048 6.75861 6.83551 7.10810 7.21296 7.22541 7.28753 7.42838 7.59929 7.76146 7.83300 8.18258 8.24074 8.39647 8.55540 9.07933 9.67511 11.14961 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.003471 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.002752 B = 8065.551688 C = 8877.798274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.258 3.742 3 C -0.034 4.034 4 C -0.070 4.070 5 C -0.083 4.083 6 C -0.045 4.045 7 C 0.099 3.901 8 H 0.071 0.929 9 C 0.523 3.477 10 N -0.859 5.859 11 O -0.498 6.498 12 N -0.512 5.512 13 C 0.060 3.940 14 C -0.115 4.115 15 C -0.113 4.113 16 C 0.060 3.940 17 H 0.036 0.964 18 C -0.508 4.508 19 H 0.052 0.948 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.286 1.286 26 C 0.054 3.946 27 C -0.120 4.120 28 C -0.071 4.071 29 H 0.134 0.866 30 H 0.150 0.850 31 H 0.396 0.604 32 H 0.401 0.599 33 H 0.062 0.938 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.029 0.971 39 H 0.258 0.742 40 H 0.012 0.988 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.175 4.700 -13.566 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.057 4.057 3 C -0.038 4.038 4 C -0.091 4.091 5 C -0.101 4.101 6 C -0.046 4.046 7 C -0.014 4.014 8 H 0.089 0.911 9 C 0.306 3.694 10 N -0.424 5.424 11 O -0.370 6.370 12 N -0.237 5.237 13 C -0.068 4.068 14 C -0.153 4.153 15 C -0.151 4.151 16 C 0.041 3.959 17 H 0.054 0.946 18 C -0.547 4.547 19 H 0.071 0.929 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.212 1.212 26 C -0.071 4.071 27 C -0.138 4.138 28 C -0.092 4.092 29 H 0.152 0.848 30 H 0.168 0.832 31 H 0.224 0.776 32 H 0.232 0.768 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.031 0.969 41 H 0.109 0.891 42 H 0.151 0.849 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.602 4.941 -12.272 19.704 hybrid contribution 1.582 -0.401 -1.108 1.973 sum -13.020 4.540 -13.380 19.214 Atomic orbital electron populations 1.81252 1.12160 1.09066 1.07470 1.25775 0.92721 0.93544 0.93651 1.16040 0.84144 1.08002 0.95568 1.21261 0.94278 0.96890 0.96667 1.21222 0.92933 0.96661 0.99312 1.19856 0.94018 0.97059 0.93707 1.20502 0.91136 0.93509 0.96228 0.91121 1.20256 0.80016 0.87335 0.81839 1.43834 1.56651 1.15597 1.26364 1.90792 1.35568 1.76391 1.34286 1.61930 1.11932 1.16224 1.33623 1.22147 0.98255 0.87900 0.98450 1.21652 0.99875 0.97966 0.95793 1.21693 0.90246 1.00352 1.02792 1.18601 0.94298 0.91768 0.91220 0.94604 1.21168 0.91317 1.39900 1.02348 0.92931 1.24916 0.97903 0.95483 0.95588 1.69898 1.34680 1.41765 1.06482 0.86593 0.86314 0.77467 0.77937 1.19917 1.21088 1.21204 1.22698 0.82255 1.02256 0.99933 1.20965 0.93628 1.01326 0.97903 1.21046 0.93932 0.97590 0.96591 0.84813 0.83239 0.77587 0.76796 0.91931 0.95748 0.91978 0.93449 0.89089 0.95259 0.93222 0.96947 0.89086 0.84858 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.26 18.54 41.83 0.78 -4.48 16 2 C 0.26 2.60 15.33 -22.47 -0.34 2.26 16 3 C -0.03 -0.29 5.73 -106.93 -0.61 -0.90 16 4 C -0.07 -0.62 9.76 -39.17 -0.38 -1.00 16 5 C -0.08 -0.87 8.10 -39.64 -0.32 -1.19 16 6 C -0.04 -0.44 3.48 -104.53 -0.36 -0.80 16 7 C 0.10 1.25 2.09 -70.02 -0.15 1.10 16 8 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 9 C 0.52 7.08 7.09 -10.98 -0.08 7.00 16 10 N -0.86 -7.29 8.77 31.22 0.27 -7.01 16 11 O -0.50 -9.39 14.66 5.56 0.08 -9.31 16 12 N -0.51 -8.61 3.65 -229.49 -0.84 -9.45 16 13 C 0.06 0.95 5.07 -3.84 -0.02 0.93 16 14 C -0.11 -2.12 6.09 -26.65 -0.16 -2.29 16 15 C -0.11 -2.61 5.02 -26.61 -0.13 -2.74 16 16 C 0.06 1.50 2.26 -91.69 -0.21 1.29 16 17 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.51 -14.08 8.57 -34.44 -0.29 -14.37 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 21 N -0.89 -25.45 11.35 55.43 0.63 -24.82 16 22 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 C 0.05 1.15 4.29 -3.83 -0.02 1.13 16 27 C -0.12 -0.83 9.48 -39.64 -0.38 -1.21 16 28 C -0.07 -0.48 9.76 -39.17 -0.38 -0.86 16 29 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.15 1.86 7.71 -52.49 -0.40 1.46 16 31 H 0.40 2.09 8.55 -40.82 -0.35 1.75 16 32 H 0.40 3.03 8.93 -40.82 -0.36 2.67 16 33 H 0.06 0.85 5.98 -51.93 -0.31 0.54 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 2.07 5.22 -51.93 -0.27 1.80 16 42 H 0.13 0.60 8.03 -52.49 -0.42 0.17 16 43 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -32.77 354.83 -8.47 -41.23 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.78 Total: 2.06 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -3.94 Total: -10.02 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.84 Total: -45.77 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.77 -8.47 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595619710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.976 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds