Wall clock time and date at job start Fri Apr 10 2020 22:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38321 * 119.88256 * 2 1 4 4 C 1.38017 * 120.11987 * 179.97438 * 3 2 1 5 5 C 1.39327 * 119.87866 * 359.97438 * 4 3 2 6 6 C 1.48434 * 120.11551 * 180.02562 * 5 4 3 7 7 N 1.30804 * 126.34049 * 0.03563 * 6 5 4 8 8 O 1.21270 * 110.34253 * 179.70826 * 7 6 5 9 9 C 1.34059 * 109.96533 * 0.41616 * 8 7 6 10 10 N 1.37398 * 126.55612 * 179.86265 * 9 8 7 11 11 C 1.46847 * 110.99987 * 235.47276 * 10 9 8 12 12 C 1.53037 * 109.52401 * 185.83499 * 11 10 9 13 13 C 1.53114 * 109.27670 * 300.82428 * 12 11 10 14 14 C 1.53117 * 109.16666 * 57.65193 * 13 12 11 15 15 H 1.09007 * 109.50121 * 62.32391 * 14 13 12 16 16 C 1.50694 * 109.50402 * 182.40384 * 14 13 12 17 17 H 1.08001 * 120.00596 * 5.43882 * 16 14 13 18 18 C 1.37885 * 119.99879 * 185.44098 * 16 14 13 19 19 N 1.31517 * 119.99736 * 9.55949 * 18 16 14 20 20 Si 1.86795 * 120.00031 * 189.56645 * 18 16 14 21 21 H 1.48499 * 109.47447 * 94.98515 * 20 18 16 22 22 H 1.48504 * 109.47148 * 214.98737 * 20 18 16 23 23 H 1.48504 * 109.47160 * 334.98251 * 20 18 16 24 24 C 1.46850 * 110.99521 * 359.68157 * 10 9 8 25 25 N 1.31996 * 106.89014 * 359.59419 * 9 8 7 26 26 C 1.39313 * 119.76267 * 0.27128 * 5 4 3 27 27 C 1.38029 * 119.88047 * 359.47359 * 26 5 4 28 28 H 1.09004 * 109.47539 * 89.99618 * 1 2 3 29 29 H 1.09002 * 109.47871 * 209.99709 * 1 2 3 30 30 H 1.09006 * 109.47227 * 329.99920 * 1 2 3 31 31 H 1.07995 * 119.93879 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.06297 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.45995 * 65.81700 * 11 10 9 34 34 H 1.08996 * 109.46296 * 305.85528 * 11 10 9 35 35 H 1.08995 * 109.50374 * 180.87659 * 12 11 10 36 36 H 1.09003 * 109.49694 * 60.76157 * 12 11 10 37 37 H 1.09006 * 109.52126 * 177.56046 * 13 12 11 38 38 H 1.08999 * 109.52330 * 297.68252 * 13 12 11 39 39 H 0.97002 * 119.99415 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.46155 * 54.14409 * 24 10 9 41 41 H 1.08995 * 109.46273 * 294.17437 * 24 10 9 42 42 H 1.08001 * 120.06174 * 179.72015 * 26 5 4 43 43 H 1.07999 * 119.94216 * 180.22674 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1993 0.0000 4 6 3.5763 1.2050 0.0005 5 6 4.2753 -0.0002 0.0016 6 6 5.7597 -0.0002 0.0028 7 7 6.5348 1.0535 0.0036 8 8 7.7005 0.7193 0.0102 9 6 7.7933 -0.6181 0.0053 10 7 8.9510 -1.3581 0.0075 11 6 8.9810 -2.2917 -1.1255 12 6 10.2098 -3.1966 -1.0102 13 6 11.4743 -2.3333 -1.0024 14 6 11.3959 -1.3373 0.1579 15 1 11.3598 -1.8807 1.1021 16 6 12.6095 -0.4443 0.1372 17 1 13.3176 -0.5140 -0.6752 18 6 12.8160 0.4619 1.1558 19 7 12.0647 0.4212 2.2345 20 14 14.1628 1.7473 1.0035 21 1 13.5851 3.0094 0.4755 22 1 14.7615 1.9977 2.3392 23 1 15.2125 1.2568 0.0747 24 6 10.1327 -0.4863 0.0087 25 7 6.5599 -1.0881 0.0038 26 6 3.5762 -1.2052 -0.0036 27 6 2.1960 -1.1994 0.0012 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3635 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6532 2.1329 -0.0004 32 1 4.1134 2.1420 0.0001 33 1 9.0301 -1.7296 -2.0581 34 1 8.0781 -2.9023 -1.1169 35 1 10.2401 -3.8790 -1.8595 36 1 10.1543 -3.7692 -0.0843 37 1 12.3497 -2.9707 -0.8769 38 1 11.5509 -1.7909 -1.9447 39 1 12.2098 1.0589 2.9508 40 1 10.0663 0.2143 0.8410 41 1 10.1765 0.0673 -0.9292 42 1 4.1133 -2.1422 -0.0073 43 1 1.6530 -2.1330 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:47 Heat of formation + Delta-G solvation = 72.669554 kcal Electronic energy + Delta-G solvation = -25254.526408 eV Core-core repulsion = 21687.673584 eV Total energy + Delta-G solvation = -3566.852824 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.44148 -40.45969 -40.30251 -36.97503 -35.91916 -34.47756 -33.62747 -32.17773 -31.68526 -31.51800 -28.34849 -27.08289 -26.07901 -25.09612 -23.87301 -23.37716 -22.89263 -21.78217 -20.63714 -19.43579 -19.12370 -18.41233 -17.40410 -17.27821 -16.47989 -16.25153 -16.02091 -15.84939 -15.54565 -15.02998 -14.72171 -14.57007 -14.51909 -14.44779 -14.28453 -13.73257 -13.62201 -13.49756 -13.01236 -12.88697 -12.80465 -12.64628 -12.42105 -12.36323 -12.29107 -12.21501 -11.93858 -11.87352 -11.83112 -11.36980 -11.04393 -10.86338 -10.51333 -9.99595 -9.87072 -9.44134 -8.17920 -6.28012 -0.37518 0.27663 0.37464 1.33096 1.40559 1.43758 1.47583 1.52611 2.20786 2.41991 2.75417 2.78293 3.14731 3.38284 3.88356 3.90785 3.96008 3.98536 4.00435 4.15741 4.31502 4.39910 4.41223 4.44734 4.61238 4.63819 4.71236 4.79749 4.81864 4.83770 4.89836 4.91952 5.06875 5.08237 5.12039 5.25021 5.26055 5.36416 5.45205 5.50983 5.58314 5.58557 5.76112 5.82243 5.93329 5.93515 6.30204 6.85529 7.09423 7.41251 8.89958 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.002933 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.453693 B = 9544.746203 C =10499.682602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.064 4.064 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.054 4.054 6 C 0.227 3.773 7 N -0.411 5.411 8 O 0.023 5.977 9 C 0.371 3.629 10 N -0.424 5.424 11 C 0.065 3.935 12 C -0.107 4.107 13 C -0.111 4.111 14 C 0.051 3.949 15 H 0.012 0.988 16 C -0.532 4.532 17 H 0.064 0.936 18 C 0.017 3.983 19 N -0.915 5.915 20 Si 0.948 3.052 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.261 1.261 24 C 0.075 3.925 25 N -0.508 5.508 26 C -0.077 4.077 27 C -0.123 4.123 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.122 0.878 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.261 0.739 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.132 0.868 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.704 -4.061 -7.437 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.111 4.111 5 C -0.056 4.056 6 C -0.044 4.044 7 N -0.131 5.131 8 O -0.023 6.023 9 C 0.063 3.937 10 N -0.152 5.152 11 C -0.059 4.059 12 C -0.144 4.144 13 C -0.148 4.148 14 C 0.032 3.968 15 H 0.030 0.970 16 C -0.571 4.571 17 H 0.083 0.917 18 C -0.183 4.183 19 N -0.553 5.553 20 Si 0.774 3.226 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.185 1.185 24 C -0.050 4.050 25 N -0.250 5.250 26 C -0.097 4.097 27 C -0.140 4.140 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.172 0.828 32 H 0.140 0.860 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.150 0.850 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.164 -3.757 -6.862 22.564 hybrid contribution 1.592 1.446 0.061 2.152 sum -19.572 -2.311 -6.802 20.848 Atomic orbital electron populations 1.20920 0.88164 1.04309 1.03716 1.20543 0.98217 0.92447 0.95309 1.21257 0.92327 0.99601 1.00958 1.21259 0.95498 0.96400 0.97935 1.17569 0.83682 0.96244 1.08129 1.24247 0.97658 0.83688 0.98812 1.74759 0.88818 1.23379 1.26150 1.85424 1.22896 1.25094 1.68852 1.26703 0.93375 0.80836 0.92771 1.58869 0.97893 1.15997 1.42456 1.22516 1.02139 0.93402 0.87868 1.21659 0.91850 0.97125 1.03787 1.21657 0.97491 0.97375 0.98317 1.18667 0.90252 0.92987 0.94903 0.96990 1.21473 1.07992 1.20086 1.07520 0.91748 1.25784 0.98397 0.99577 0.94560 1.70095 1.41720 1.36668 1.06857 0.85682 0.79750 0.79658 0.77495 1.20517 1.21281 1.18549 1.22445 0.87392 0.95013 1.00194 1.72278 0.97469 1.27293 1.27947 1.21313 0.95186 0.96598 0.96643 1.21329 0.92512 0.99513 1.00670 0.89545 0.89970 0.90196 0.82789 0.86023 0.92592 0.88057 0.87329 0.91408 0.91724 0.92425 0.92962 0.91846 0.94340 0.85009 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 71.23 0.71 -0.24 16 2 C -0.06 -1.01 5.88 -19.83 -0.12 -1.13 16 3 C -0.12 -2.28 9.68 22.24 0.22 -2.06 16 4 C -0.09 -2.33 9.69 22.48 0.22 -2.11 16 5 C -0.05 -1.63 5.88 -20.04 -0.12 -1.75 16 6 C 0.23 8.50 7.79 137.34 1.07 9.57 16 7 N -0.41 -16.85 11.84 -57.88 -0.69 -17.54 16 8 O 0.02 1.02 10.46 71.01 0.74 1.77 16 9 C 0.37 15.38 7.49 179.23 1.34 16.72 16 10 N -0.42 -17.23 4.69 -820.51 -3.85 -21.08 16 11 C 0.06 2.06 5.37 86.33 0.46 2.52 16 12 C -0.11 -3.11 6.09 30.64 0.19 -2.93 16 13 C -0.11 -4.03 5.23 30.67 0.16 -3.87 16 14 C 0.05 2.42 2.13 -11.49 -0.02 2.40 16 15 H 0.01 0.65 8.09 -2.38 -0.02 0.63 16 16 C -0.53 -27.87 8.48 25.60 0.22 -27.65 16 17 H 0.06 3.26 7.77 -2.91 -0.02 3.23 16 18 C 0.02 0.91 5.21 84.66 0.44 1.35 16 19 N -0.91 -52.94 12.18 21.45 0.26 -52.68 16 20 Si 0.95 42.84 29.55 68.60 2.03 44.87 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 24 C 0.08 3.48 4.03 86.33 0.35 3.83 16 25 N -0.51 -19.64 10.99 -311.49 -3.42 -23.06 16 26 C -0.08 -1.91 9.70 22.48 0.22 -1.69 16 27 C -0.12 -2.16 9.68 22.24 0.22 -1.94 16 28 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 30 H 0.08 0.53 8.08 -2.38 -0.02 0.51 16 31 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.12 3.24 7.87 -2.91 -0.02 3.22 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.10 2.91 7.87 -2.39 -0.02 2.90 16 35 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.26 14.55 8.31 -92.71 -0.77 13.77 16 40 H 0.06 3.43 6.75 -2.39 -0.02 3.41 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.13 3.27 7.87 -2.91 -0.02 3.24 16 43 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -65.26 357.17 1.63 -63.63 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.01 Total: 13.07 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 5.55 Total: -8.99 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -7.70 Total: -114.36 kcal Atomic # 8 Polarization: 1.02 SS G_CDS: 0.74 Total: 1.77 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.26 1.63 -63.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.304 kcal (2) G-P(sol) polarization free energy of solvation -65.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds