Wall clock time and date at job start Fri Apr 10 2020 22:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36253 * 120.06074 * 2 1 4 4 C 1.39950 * 120.11699 * 180.26924 * 3 2 1 5 5 C 1.47927 * 119.88368 * 179.72114 * 4 3 2 6 6 C 1.39619 * 120.16181 * 129.73195 * 5 4 3 7 7 C 1.37889 * 119.87967 * 179.97438 * 6 5 4 8 8 C 1.50702 * 119.89747 * 179.97438 * 7 6 5 9 9 N 1.46893 * 109.47464 * 89.99542 * 8 7 6 10 10 C 1.46901 * 111.00159 * 66.05012 * 9 8 7 11 11 C 1.46904 * 111.00004 * 189.99932 * 9 8 7 12 12 C 1.38448 * 120.20728 * 0.25310 * 7 6 5 13 13 C 1.38293 * 120.32102 * 359.48735 * 12 7 6 14 14 C 1.38230 * 120.12002 * 0.51501 * 13 12 7 15 15 F 1.35101 * 120.10494 * 179.72565 * 14 13 12 16 16 C 1.39987 * 120.23296 * 359.45744 * 4 3 2 17 17 C 1.36223 * 120.11919 * 0.28342 * 16 4 3 18 18 C 1.40922 * 120.05870 * 179.74619 * 2 1 3 19 19 C 1.41015 * 120.11463 * 0.02562 * 18 2 1 20 20 H 1.08000 * 120.00038 * 333.70840 * 19 18 2 21 21 C 1.40002 * 120.00044 * 153.71299 * 19 18 2 22 22 N 1.30801 * 120.00245 * 343.37968 * 21 19 18 23 23 Si 1.86805 * 119.99845 * 163.37970 * 21 19 18 24 24 H 1.48494 * 109.47039 * 89.99822 * 23 21 19 25 25 H 1.48506 * 109.47065 * 210.00163 * 23 21 19 26 26 H 1.48500 * 109.47155 * 330.00019 * 23 21 19 27 27 H 1.08991 * 109.47068 * 270.25766 * 1 2 3 28 28 H 1.09000 * 109.46773 * 30.25405 * 1 2 3 29 29 H 1.08998 * 109.47281 * 150.25540 * 1 2 3 30 30 H 1.07998 * 119.94306 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.05559 * 0.02562 * 6 5 4 32 32 H 1.09011 * 109.47046 * 329.99645 * 8 7 6 33 33 H 1.09000 * 109.46963 * 210.00336 * 8 7 6 34 34 H 1.08994 * 109.47752 * 183.95667 * 10 9 8 35 35 H 1.09002 * 109.47261 * 63.94828 * 10 9 8 36 36 H 1.09000 * 109.46799 * 303.95440 * 10 9 8 37 37 H 1.08992 * 109.47498 * 299.99906 * 11 9 8 38 38 H 1.09000 * 109.46990 * 60.00271 * 11 9 8 39 39 H 1.09001 * 109.47079 * 179.97438 * 11 9 8 40 40 H 1.07994 * 119.83548 * 179.74830 * 12 7 6 41 41 H 1.07999 * 119.94194 * 180.23376 * 13 12 7 42 42 H 1.07996 * 119.94369 * 180.27175 * 16 4 3 43 43 H 1.07998 * 120.06394 * 179.97438 * 17 16 4 44 44 H 0.96995 * 120.00072 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1793 0.0000 4 6 3.5890 1.1806 -0.0057 5 6 4.3248 2.4639 -0.0119 6 6 5.3469 2.6911 0.9117 7 6 6.0292 3.8892 0.9004 8 6 7.1321 4.1350 1.8976 9 7 8.4111 3.6821 1.3347 10 6 8.7969 4.5014 0.1781 11 6 9.4663 3.6843 2.3568 12 6 5.7005 4.8694 -0.0205 13 6 4.6932 4.6513 -0.9426 14 6 4.0003 3.4552 -0.9432 15 9 3.0126 3.2447 -1.8406 16 6 4.2951 -0.0281 0.0000 17 6 3.6225 -1.2126 0.0054 18 6 2.2129 -1.2197 0.0054 19 6 1.5115 -2.4430 0.0103 20 1 0.5153 -2.4927 0.4244 21 6 2.1066 -3.5932 -0.5216 22 7 3.1500 -3.4880 -1.3034 23 14 1.4105 -5.2783 -0.1148 24 1 0.3828 -5.6456 -1.1218 25 1 2.5036 -6.2833 -0.1339 26 1 0.7916 -5.2457 1.2347 27 1 -0.3633 0.0046 1.0276 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3634 -0.8922 -0.5098 30 1 1.6496 2.1146 0.0004 31 1 5.6030 1.9293 1.6332 32 1 6.9228 3.5833 2.8142 33 1 7.1899 5.2005 2.1200 34 1 9.7104 4.1016 -0.2620 35 1 8.9684 5.5282 0.5011 36 1 7.9981 4.4824 -0.5633 37 1 9.5938 4.6947 2.7453 38 1 9.1858 3.0150 3.1701 39 1 10.4023 3.3444 1.9134 40 1 6.2361 5.8071 -0.0214 41 1 4.4444 5.4187 -1.6606 42 1 5.3751 -0.0215 0.0001 43 1 4.1681 -2.1447 0.0094 44 1 3.5625 -4.2849 -1.6715 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596641337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:52 Heat of formation + Delta-G solvation = -9.258733 kcal Electronic energy + Delta-G solvation = -25150.193725 eV Core-core repulsion = 21559.868262 eV Total energy + Delta-G solvation = -3590.325462 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.154 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -48.24724 -39.25855 -37.84151 -36.73827 -33.93526 -32.23858 -31.19084 -30.62066 -28.87972 -27.67252 -26.55460 -26.09199 -24.82714 -22.65494 -22.35386 -21.27449 -20.10524 -19.20717 -17.27581 -17.05348 -16.10997 -15.72716 -15.57596 -15.34834 -14.98579 -14.94927 -14.42953 -13.97748 -13.73512 -13.51258 -13.38528 -12.87821 -12.66605 -12.54104 -12.46321 -12.24956 -12.02070 -11.81741 -11.74719 -11.66517 -11.49472 -11.36561 -11.16022 -11.12047 -10.93859 -10.81092 -10.47770 -10.37254 -9.55408 -9.41897 -9.21001 -8.60307 -8.52431 -8.15521 -7.40218 -7.14418 -6.83507 -4.39882 1.44640 1.58213 2.71201 3.02474 3.05729 3.08749 3.14326 3.76624 3.85978 4.20812 4.54500 4.73288 4.84563 4.94112 5.06593 5.19908 5.23479 5.33758 5.38758 5.48142 5.56009 5.61991 5.67826 5.71211 5.82585 5.87450 6.20193 6.23559 6.33059 6.40608 6.42969 6.52335 6.67021 6.69707 6.74040 6.81007 6.89679 6.93925 6.98058 7.02975 7.22477 7.31334 7.37918 7.62470 7.86912 8.00516 8.06293 8.23722 8.55469 8.80237 8.91612 10.07594 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.016619 B = 0.003388 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.459225 B = 8263.012346 C = 9369.917764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.201 4.201 3 C -0.054 4.054 4 C -0.206 4.206 5 C -0.014 4.014 6 C -0.078 4.078 7 C -0.092 4.092 8 C 0.098 3.902 9 N -0.542 5.542 10 C 0.020 3.980 11 C 0.025 3.975 12 C -0.115 4.115 13 C -0.154 4.154 14 C 0.086 3.914 15 F -0.137 7.137 16 C -0.074 4.074 17 C -0.169 4.169 18 C 0.124 3.876 19 C -0.449 4.449 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.782 5.782 23 Si 0.908 3.092 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.259 1.259 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.076 0.924 37 H 0.023 0.977 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.910 11.805 4.203 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.203 4.203 3 C -0.072 4.072 4 C -0.208 4.208 5 C -0.015 4.015 6 C -0.097 4.097 7 C -0.092 4.092 8 C -0.029 4.029 9 N -0.265 5.265 10 C -0.128 4.128 11 C -0.123 4.123 12 C -0.134 4.134 13 C -0.173 4.173 14 C 0.067 3.933 15 F -0.115 7.115 16 C -0.093 4.093 17 C -0.188 4.188 18 C 0.121 3.879 19 C -0.477 4.477 20 H 0.101 0.899 21 C -0.145 4.145 22 N -0.406 5.406 23 Si 0.732 3.268 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.183 1.183 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.146 0.854 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.108 0.892 43 H 0.136 0.864 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.982 11.157 3.863 14.252 hybrid contribution -0.204 0.061 0.046 0.218 sum 7.778 11.218 3.909 14.199 Atomic orbital electron populations 1.20401 0.93471 1.00653 0.99617 1.19417 0.94464 0.92942 1.13433 1.20142 0.92418 0.96055 0.98575 1.17854 0.92431 0.89924 1.20555 1.19097 0.95487 0.93675 0.93207 1.21032 0.94646 0.96035 0.97945 1.19537 0.97226 0.94664 0.97819 1.21010 0.87429 0.98350 0.96070 1.61954 1.02497 1.53803 1.08263 1.22481 1.01951 0.94336 0.94062 1.22387 0.94944 0.99833 0.95153 1.20648 0.97950 0.98943 0.95874 1.20897 0.98385 0.96482 1.01508 1.17933 0.89757 0.95265 0.90387 1.91476 1.59245 1.95261 1.65537 1.20413 0.97173 0.92124 0.99558 1.20944 0.94472 0.96483 1.06890 1.17560 0.91866 0.91635 0.86808 1.19642 1.02048 0.92469 1.33569 0.89929 1.26001 0.94160 1.01621 0.92679 1.69819 1.17924 1.32007 1.20880 0.86308 0.79484 0.80697 0.80302 1.19376 1.19981 1.18313 0.94056 0.94318 0.92019 0.89479 0.85382 0.89862 0.94178 0.91567 0.95951 0.90512 0.95877 0.91226 0.91360 0.86387 0.85632 0.89211 0.86441 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.39 36.01 0.34 -1.44 16 2 C -0.20 -4.90 5.90 -104.32 -0.62 -5.51 16 3 C -0.05 -1.25 8.43 -39.65 -0.33 -1.58 16 4 C -0.21 -4.69 5.34 -104.63 -0.56 -5.25 16 5 C -0.01 -0.27 5.47 -104.82 -0.57 -0.84 16 6 C -0.08 -1.31 9.15 -39.19 -0.36 -1.67 16 7 C -0.09 -1.29 4.88 -104.67 -0.51 -1.80 16 8 C 0.10 1.13 5.11 -4.98 -0.03 1.11 16 9 N -0.54 -6.26 5.01 -252.72 -1.27 -7.53 16 10 C 0.02 0.20 9.26 60.07 0.56 0.76 16 11 C 0.03 0.23 9.57 60.07 0.57 0.80 16 12 C -0.12 -1.52 7.90 -39.48 -0.31 -1.84 16 13 C -0.15 -2.29 10.01 -39.56 -0.40 -2.69 16 14 C 0.09 1.59 7.16 -38.99 -0.28 1.31 16 15 F -0.14 -2.76 15.91 2.25 0.04 -2.73 16 16 C -0.07 -1.75 9.43 -39.65 -0.37 -2.13 16 17 C -0.17 -4.34 8.61 -39.28 -0.34 -4.68 16 18 C 0.12 3.24 5.56 -106.80 -0.59 2.65 16 19 C -0.45 -11.48 8.09 -37.87 -0.31 -11.78 16 20 H 0.08 2.02 6.88 -52.49 -0.36 1.66 16 21 C 0.07 1.82 5.15 -17.33 -0.09 1.73 16 22 N -0.78 -19.76 10.99 55.55 0.61 -19.15 16 23 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 29 H 0.06 1.31 6.77 -51.93 -0.35 0.95 16 30 H 0.09 1.91 7.79 -52.49 -0.41 1.50 16 31 H 0.13 2.12 8.04 -52.48 -0.42 1.70 16 32 H 0.08 0.92 8.00 -51.92 -0.42 0.50 16 33 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.87 5.90 -51.93 -0.31 0.57 16 37 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.12 1.24 7.99 -52.49 -0.42 0.82 16 41 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.09 1.96 8.03 -52.49 -0.42 1.54 16 43 H 0.12 3.10 6.23 -52.49 -0.33 2.77 16 44 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -27.52 364.22 -10.72 -38.24 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.36 Total: 5.47 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: -4.20 Total: -32.84 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: -0.66 Total: -26.68 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.52 -10.72 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596641337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.985 kcal (2) G-P(sol) polarization free energy of solvation -27.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds