Wall clock time and date at job start Fri Apr 10 2020 22:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36253 * 120.06074 * 2 1 4 4 C 1.39950 * 120.11699 * 180.26924 * 3 2 1 5 5 C 1.47927 * 119.88368 * 179.72114 * 4 3 2 6 6 C 1.39619 * 120.16181 * 129.73195 * 5 4 3 7 7 C 1.37889 * 119.87967 * 179.97438 * 6 5 4 8 8 C 1.50702 * 119.89747 * 179.97438 * 7 6 5 9 9 N 1.46893 * 109.47464 * 89.99542 * 8 7 6 10 10 C 1.46901 * 111.00159 * 66.05012 * 9 8 7 11 11 C 1.46904 * 111.00004 * 189.99932 * 9 8 7 12 12 C 1.38448 * 120.20728 * 0.25310 * 7 6 5 13 13 C 1.38293 * 120.32102 * 359.48735 * 12 7 6 14 14 C 1.38230 * 120.12002 * 0.51501 * 13 12 7 15 15 F 1.35101 * 120.10494 * 179.72565 * 14 13 12 16 16 C 1.39987 * 120.23296 * 359.45744 * 4 3 2 17 17 C 1.36223 * 120.11919 * 0.28342 * 16 4 3 18 18 C 1.40922 * 120.05870 * 179.74619 * 2 1 3 19 19 C 1.41015 * 120.11463 * 0.02562 * 18 2 1 20 20 H 1.08000 * 120.00038 * 333.70840 * 19 18 2 21 21 C 1.40002 * 120.00044 * 153.71299 * 19 18 2 22 22 N 1.30801 * 120.00245 * 343.37968 * 21 19 18 23 23 Si 1.86805 * 119.99845 * 163.37970 * 21 19 18 24 24 H 1.48494 * 109.47039 * 89.99822 * 23 21 19 25 25 H 1.48506 * 109.47065 * 210.00163 * 23 21 19 26 26 H 1.48500 * 109.47155 * 330.00019 * 23 21 19 27 27 H 1.08991 * 109.47068 * 270.25766 * 1 2 3 28 28 H 1.09000 * 109.46773 * 30.25405 * 1 2 3 29 29 H 1.08998 * 109.47281 * 150.25540 * 1 2 3 30 30 H 1.07998 * 119.94306 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.05559 * 0.02562 * 6 5 4 32 32 H 1.09011 * 109.47046 * 329.99645 * 8 7 6 33 33 H 1.09000 * 109.46963 * 210.00336 * 8 7 6 34 34 H 1.08994 * 109.47752 * 183.95667 * 10 9 8 35 35 H 1.09002 * 109.47261 * 63.94828 * 10 9 8 36 36 H 1.09000 * 109.46799 * 303.95440 * 10 9 8 37 37 H 1.08992 * 109.47498 * 299.99906 * 11 9 8 38 38 H 1.09000 * 109.46990 * 60.00271 * 11 9 8 39 39 H 1.09001 * 109.47079 * 179.97438 * 11 9 8 40 40 H 1.07994 * 119.83548 * 179.74830 * 12 7 6 41 41 H 1.07999 * 119.94194 * 180.23376 * 13 12 7 42 42 H 1.07996 * 119.94369 * 180.27175 * 16 4 3 43 43 H 1.07998 * 120.06394 * 179.97438 * 17 16 4 44 44 H 0.96995 * 120.00072 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1793 0.0000 4 6 3.5890 1.1806 -0.0057 5 6 4.3248 2.4639 -0.0119 6 6 5.3469 2.6911 0.9117 7 6 6.0292 3.8892 0.9004 8 6 7.1321 4.1350 1.8976 9 7 8.4111 3.6821 1.3347 10 6 8.7969 4.5014 0.1781 11 6 9.4663 3.6843 2.3568 12 6 5.7005 4.8694 -0.0205 13 6 4.6932 4.6513 -0.9426 14 6 4.0003 3.4552 -0.9432 15 9 3.0126 3.2447 -1.8406 16 6 4.2951 -0.0281 0.0000 17 6 3.6225 -1.2126 0.0054 18 6 2.2129 -1.2197 0.0054 19 6 1.5115 -2.4430 0.0103 20 1 0.5153 -2.4927 0.4244 21 6 2.1066 -3.5932 -0.5216 22 7 3.1500 -3.4880 -1.3034 23 14 1.4105 -5.2783 -0.1148 24 1 0.3828 -5.6456 -1.1218 25 1 2.5036 -6.2833 -0.1339 26 1 0.7916 -5.2457 1.2347 27 1 -0.3633 0.0046 1.0276 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3634 -0.8922 -0.5098 30 1 1.6496 2.1146 0.0004 31 1 5.6030 1.9293 1.6332 32 1 6.9228 3.5833 2.8142 33 1 7.1899 5.2005 2.1200 34 1 9.7104 4.1016 -0.2620 35 1 8.9684 5.5282 0.5011 36 1 7.9981 4.4824 -0.5633 37 1 9.5938 4.6947 2.7453 38 1 9.1858 3.0150 3.1701 39 1 10.4023 3.3444 1.9134 40 1 6.2361 5.8071 -0.0214 41 1 4.4444 5.4187 -1.6606 42 1 5.3751 -0.0215 0.0001 43 1 4.1681 -2.1447 0.0094 44 1 3.5625 -4.2849 -1.6715 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596641337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:51 Heat of formation + Delta-G solvation = -21.772499 kcal Electronic energy + Delta-G solvation = -25150.736362 eV Core-core repulsion = 21559.868262 eV Total energy + Delta-G solvation = -3590.868100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.154 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.72486 -40.53268 -39.49341 -37.77412 -35.70742 -33.90011 -32.46768 -32.18853 -30.53380 -28.43846 -28.07877 -27.33351 -26.56476 -23.99969 -23.58422 -22.69277 -21.60765 -20.82105 -19.14198 -18.42296 -17.43726 -17.18466 -16.81911 -16.58495 -16.26215 -15.92627 -15.80519 -15.56435 -15.44391 -14.82134 -14.54660 -14.40550 -14.26379 -14.11412 -13.63999 -13.42385 -13.27413 -13.16207 -13.12934 -12.89538 -12.85313 -12.77674 -12.59294 -12.42009 -12.32470 -12.25343 -12.00993 -11.89558 -11.32399 -11.23401 -11.03452 -9.99285 -9.60348 -9.28381 -9.20507 -8.91645 -8.63967 -6.31153 0.11023 0.31345 1.00285 1.16990 1.38561 1.49458 1.54976 2.19387 2.55587 2.76456 3.28199 3.44114 3.65762 3.83988 3.86678 3.99181 4.23351 4.32891 4.38873 4.41343 4.44178 4.49248 4.61347 4.62877 4.69982 4.76814 4.81443 4.91431 5.00062 5.05106 5.06411 5.09069 5.10038 5.15001 5.22022 5.28413 5.36761 5.40622 5.51218 5.61147 5.76147 5.91911 6.07229 6.11222 6.13914 6.16630 6.18607 6.35685 6.65964 6.91103 7.02640 8.29671 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.016619 B = 0.003388 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.459225 B = 8263.012346 C = 9369.917764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.216 4.216 3 C -0.067 4.067 4 C -0.197 4.197 5 C -0.049 4.049 6 C -0.083 4.083 7 C -0.083 4.083 8 C 0.101 3.899 9 N -0.566 5.566 10 C 0.020 3.980 11 C 0.026 3.974 12 C -0.094 4.094 13 C -0.145 4.145 14 C 0.062 3.938 15 F -0.154 7.154 16 C -0.084 4.084 17 C -0.190 4.190 18 C 0.091 3.909 19 C -0.481 4.481 20 H 0.085 0.915 21 C 0.034 3.966 22 N -0.820 5.820 23 Si 0.982 3.018 24 H -0.262 1.262 25 H -0.267 1.267 26 H -0.256 1.256 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.030 14.216 4.892 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.217 4.217 3 C -0.086 4.086 4 C -0.198 4.198 5 C -0.050 4.050 6 C -0.101 4.101 7 C -0.083 4.083 8 C -0.026 4.026 9 N -0.290 5.290 10 C -0.128 4.128 11 C -0.122 4.122 12 C -0.112 4.112 13 C -0.164 4.164 14 C 0.043 3.957 15 F -0.133 7.133 16 C -0.103 4.103 17 C -0.209 4.209 18 C 0.089 3.911 19 C -0.509 4.509 20 H 0.103 0.897 21 C -0.182 4.182 22 N -0.445 5.445 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.192 1.192 26 H -0.180 1.180 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.110 13.589 4.556 16.983 hybrid contribution -0.370 -0.407 -0.149 0.570 sum 8.740 13.182 4.407 16.419 Atomic orbital electron populations 1.20377 0.91392 1.01088 1.00704 1.19858 0.96326 0.92767 1.12780 1.20364 0.92988 0.96227 0.98985 1.18210 0.92672 0.91257 1.17634 1.19040 0.97298 0.92997 0.95693 1.21048 0.94269 0.97345 0.97471 1.19854 0.97007 0.93391 0.98067 1.21016 0.86626 0.99848 0.95147 1.61912 1.03057 1.54718 1.09351 1.22486 1.01652 0.95300 0.93395 1.22406 0.94377 1.00744 0.94635 1.21122 0.96416 0.99890 0.93754 1.21231 0.97635 0.95455 1.02070 1.18252 0.90407 0.96527 0.90549 1.91427 1.60178 1.95524 1.66171 1.20568 0.97767 0.92165 0.99765 1.20931 0.94837 0.96558 1.08602 1.17900 0.92278 0.92836 0.88122 1.19848 1.02582 0.93340 1.35165 0.89713 1.26854 0.94290 1.05175 0.91853 1.69882 1.19377 1.33330 1.21934 0.85200 0.78853 0.75631 0.80049 1.18634 1.19179 1.17982 0.92540 0.92572 0.92753 0.88284 0.85973 0.89679 0.91797 0.91197 0.94074 0.91696 0.94431 0.91250 0.90830 0.82295 0.82779 0.88191 0.88058 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.36 9.39 71.24 0.67 -2.69 16 2 C -0.22 -10.88 5.90 -19.67 -0.12 -11.00 16 3 C -0.07 -3.23 8.43 22.22 0.19 -3.05 16 4 C -0.20 -9.23 5.34 -19.87 -0.11 -9.34 16 5 C -0.05 -1.94 5.47 -19.99 -0.11 -2.05 16 6 C -0.08 -2.72 9.15 22.52 0.21 -2.51 16 7 C -0.08 -2.08 4.88 -19.90 -0.10 -2.18 16 8 C 0.10 1.97 5.11 85.56 0.44 2.41 16 9 N -0.57 -11.38 5.01 -953.47 -4.78 -16.16 16 10 C 0.02 0.33 9.26 127.69 1.18 1.52 16 11 C 0.03 0.39 9.57 127.69 1.22 1.62 16 12 C -0.09 -2.08 7.90 22.33 0.18 -1.90 16 13 C -0.15 -3.88 10.01 22.28 0.22 -3.66 16 14 C 0.06 2.24 7.16 22.65 0.16 2.40 16 15 F -0.15 -6.26 15.91 44.97 0.72 -5.54 16 16 C -0.08 -4.19 9.43 22.22 0.21 -3.98 16 17 C -0.19 -10.37 8.61 22.47 0.19 -10.17 16 18 C 0.09 5.01 5.56 -21.27 -0.12 4.89 16 19 C -0.48 -25.67 8.09 23.38 0.19 -25.48 16 20 H 0.08 4.30 6.88 -2.91 -0.02 4.28 16 21 C 0.03 1.71 5.15 85.27 0.44 2.15 16 22 N -0.82 -43.31 10.99 21.84 0.24 -43.08 16 23 Si 0.98 37.90 29.59 68.60 2.03 39.93 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 25 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 26 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 29 H 0.05 2.35 6.77 -2.39 -0.02 2.34 16 30 H 0.10 4.40 7.79 -2.91 -0.02 4.38 16 31 H 0.12 4.08 8.04 -2.91 -0.02 4.05 16 32 H 0.08 1.64 8.00 -2.38 -0.02 1.62 16 33 H 0.06 0.98 8.06 -2.39 -0.02 0.96 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 1.24 5.90 -2.39 -0.01 1.23 16 37 H 0.04 0.46 8.14 -2.39 -0.02 0.45 16 38 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.16 2.33 7.99 -2.91 -0.02 2.31 16 41 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 42 H 0.10 4.59 8.03 -2.91 -0.02 4.57 16 43 H 0.10 5.73 6.23 -2.91 -0.02 5.71 16 44 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 Total: -1.00 -63.03 364.22 4.15 -58.88 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.99 Total: 28.97 kcal Atomic # 6 Polarization: -67.96 SS G_CDS: 4.95 Total: -63.01 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -4.54 Total: -59.23 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.72 Total: -5.54 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -63.03 4.15 -58.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596641337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.108 kcal (2) G-P(sol) polarization free energy of solvation -63.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds