Wall clock time and date at job start Fri Apr 10 2020 22:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37727 * 120.00552 * 2 1 4 4 C 1.38382 * 120.37721 * 179.70419 * 3 2 1 5 5 C 1.39732 * 120.38355 * 0.55840 * 4 3 2 6 6 C 1.48395 * 120.00455 * 179.71902 * 5 4 3 7 7 C 1.39362 * 120.09659 * 174.05241 * 6 5 4 8 8 C 1.37949 * 119.90570 * 179.76771 * 7 6 5 9 9 C 1.38573 * 120.09547 * 0.50879 * 8 7 6 10 10 F 1.35097 * 119.90499 * 179.76415 * 9 8 7 11 11 C 1.38525 * 120.18667 * 359.74462 * 9 8 7 12 12 C 1.50701 * 119.94999 * 179.97438 * 11 9 8 13 13 N 1.46897 * 109.47266 * 285.02420 * 12 11 9 14 14 C 1.46900 * 111.00292 * 66.04552 * 13 12 11 15 15 C 1.46908 * 111.00027 * 190.00058 * 13 12 11 16 16 C 1.38000 * 120.09888 * 0.02562 * 11 9 8 17 17 C 1.38738 * 119.99495 * 359.44580 * 5 4 3 18 18 C 1.40538 * 119.62567 * 0.27126 * 17 5 4 19 19 C 1.41424 * 120.18929 * 180.02562 * 18 17 5 20 20 H 1.08002 * 120.00395 * 150.85792 * 19 18 17 21 21 C 1.39932 * 119.99804 * 330.86708 * 19 18 17 22 22 N 1.30832 * 120.00195 * 161.77916 * 21 19 18 23 23 Si 1.86796 * 119.99918 * 341.77271 * 21 19 18 24 24 H 1.48503 * 109.46871 * 90.54110 * 23 21 19 25 25 H 1.48500 * 109.47289 * 210.53581 * 23 21 19 26 26 H 1.48498 * 109.47469 * 330.54043 * 23 21 19 27 27 H 1.09006 * 109.46847 * 270.01997 * 1 2 3 28 28 H 1.09000 * 109.47401 * 30.01663 * 1 2 3 29 29 H 1.08997 * 109.47314 * 150.01979 * 1 2 3 30 30 H 1.08001 * 119.80834 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.81207 * 180.27762 * 4 3 2 32 32 H 1.08003 * 120.04614 * 0.02659 * 7 6 5 33 33 H 1.08002 * 119.95294 * 180.23403 * 8 7 6 34 34 H 1.08999 * 109.47273 * 45.02474 * 12 11 9 35 35 H 1.09001 * 109.46826 * 165.02557 * 12 11 9 36 36 H 1.09005 * 109.46646 * 60.00023 * 14 13 12 37 37 H 1.09001 * 109.47262 * 180.02562 * 14 13 12 38 38 H 1.08998 * 109.46759 * 300.00368 * 14 13 12 39 39 H 1.08998 * 109.46669 * 60.00137 * 15 13 12 40 40 H 1.08995 * 109.46914 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.47131 * 299.99824 * 15 13 12 42 42 H 1.07997 * 120.05161 * 179.97438 * 16 11 9 43 43 H 1.07997 * 120.18877 * 180.30233 * 17 5 4 44 44 H 0.96993 * 120.00618 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1927 0.0000 4 6 3.5795 1.2017 0.0062 5 6 4.2941 0.0009 0.0007 6 6 5.7779 0.0204 0.0011 7 6 6.4924 -1.1701 0.1206 8 6 7.8717 -1.1479 0.1157 9 6 8.5469 0.0569 0.0027 10 9 9.8977 0.0746 0.0031 11 6 7.8406 1.2431 -0.1110 12 6 8.5803 2.5504 -0.2330 13 7 9.1305 2.9258 1.0763 14 6 10.1668 1.9765 1.5037 15 6 9.6514 4.2993 1.0543 16 6 6.4607 1.2296 -0.1117 17 6 3.6162 -1.2096 0.0007 18 6 2.2109 -1.2189 0.0004 19 6 1.5078 -2.4460 0.0009 20 1 0.5304 -2.5082 0.4561 21 6 2.0786 -3.5796 -0.5884 22 7 1.6238 -4.7700 -0.2923 23 14 3.4898 -3.3932 -1.7979 24 1 4.7802 -3.4442 -1.0647 25 1 3.4405 -4.4969 -2.7901 26 1 3.3709 -2.0903 -2.5005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6527 2.1262 -0.0004 31 1 4.1103 2.1422 0.0106 32 1 5.9670 -2.1092 0.2128 33 1 8.4262 -2.0705 0.2045 34 1 9.3930 2.4424 -0.9512 35 1 7.8942 3.3255 -0.5746 36 1 10.9762 1.9692 0.7735 37 1 10.5568 2.2777 2.4759 38 1 9.7362 0.9780 1.5787 39 1 8.8460 4.9893 0.8028 40 1 10.0522 4.5515 2.0360 41 1 10.4420 4.3761 0.3080 42 1 5.9108 2.1549 -0.2000 43 1 4.1654 -2.1395 0.0014 44 1 2.0192 -5.5558 -0.7009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596647022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:59 Heat of formation + Delta-G solvation = 4.755740 kcal Electronic energy + Delta-G solvation = -25486.065168 eV Core-core repulsion = 21896.347419 eV Total energy + Delta-G solvation = -3589.717749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.02662 -39.44264 -37.98091 -36.96528 -33.76355 -32.68820 -31.79884 -30.42356 -29.46221 -27.71883 -27.02549 -25.97545 -24.73656 -22.97810 -22.41892 -21.55423 -20.57274 -19.18150 -17.61465 -17.40876 -16.59175 -16.35267 -15.90350 -15.34540 -15.00598 -14.64086 -14.61474 -14.28127 -14.02284 -13.64614 -13.30416 -13.09469 -12.93496 -12.71961 -12.63458 -12.53795 -12.38512 -12.20312 -11.95781 -11.67420 -11.42679 -11.28738 -11.27205 -11.10632 -10.83328 -10.73854 -10.67332 -10.32209 -9.70328 -9.65577 -9.17923 -8.87411 -8.75563 -8.42380 -7.70968 -7.12594 -6.98893 -4.53052 1.08026 1.41012 2.56920 2.61331 3.02966 3.15390 3.27115 3.73567 3.91533 4.07875 4.37353 4.51700 4.62299 4.81309 4.98499 5.08080 5.19234 5.29316 5.33494 5.35772 5.45522 5.48996 5.56218 5.60808 5.66418 5.85873 5.93366 6.04543 6.05536 6.17123 6.24662 6.31443 6.42094 6.49061 6.55823 6.62524 6.62826 6.81707 6.85115 6.86246 6.94426 7.08414 7.16446 7.35055 7.57805 7.63604 7.82749 8.05011 8.29514 8.59047 8.74875 10.02519 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.003946 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.163473 B = 7093.267185 C = 8363.020785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.171 4.171 3 C -0.085 4.085 4 C -0.219 4.219 5 C -0.028 4.028 6 C -0.023 4.023 7 C -0.094 4.094 8 C -0.147 4.147 9 C 0.079 3.921 10 F -0.143 7.143 11 C -0.110 4.110 12 C 0.098 3.902 13 N -0.541 5.541 14 C 0.010 3.990 15 C 0.025 3.975 16 C -0.075 4.075 17 C -0.219 4.219 18 C 0.092 3.908 19 C -0.444 4.444 20 H 0.095 0.905 21 C 0.085 3.915 22 N -0.807 5.807 23 Si 0.906 3.094 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.246 1.246 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.027 0.973 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.135 0.865 43 H 0.107 0.893 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.541 10.477 -0.408 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.172 4.172 3 C -0.103 4.103 4 C -0.238 4.238 5 C -0.028 4.028 6 C -0.023 4.023 7 C -0.112 4.112 8 C -0.166 4.166 9 C 0.060 3.940 10 F -0.121 7.121 11 C -0.111 4.111 12 C -0.029 4.029 13 N -0.265 5.265 14 C -0.138 4.138 15 C -0.124 4.124 16 C -0.094 4.094 17 C -0.237 4.237 18 C 0.089 3.911 19 C -0.473 4.473 20 H 0.112 0.888 21 C -0.134 4.134 22 N -0.431 5.431 23 Si 0.732 3.268 24 H -0.193 1.193 25 H -0.218 1.218 26 H -0.169 1.169 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.153 0.847 43 H 0.125 0.875 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.163 10.176 -0.073 15.859 hybrid contribution 1.594 -0.172 -1.028 1.905 sum 13.757 10.004 -1.101 17.046 Atomic orbital electron populations 1.20482 0.92934 1.01060 1.00276 1.19872 0.94832 0.92626 1.09868 1.20452 0.93623 0.96272 0.99933 1.20420 0.93701 0.95386 1.14306 1.18283 0.89028 0.94203 1.01315 1.19174 0.93800 0.92386 0.96922 1.21316 0.92706 0.99012 0.98154 1.20992 0.94991 0.96591 1.04043 1.17451 0.76285 0.94350 1.05929 1.91403 1.29526 1.97323 1.93883 1.19565 0.94189 0.93152 1.04203 1.20946 0.97791 0.94196 0.89965 1.62040 1.34520 1.02620 1.27308 1.22954 0.93180 0.98054 0.99587 1.22392 0.98978 0.89737 1.01250 1.21002 0.91764 0.98297 0.98289 1.21204 0.94564 0.95586 1.12391 1.17521 0.90882 0.92910 0.89786 1.19476 1.04770 0.90956 1.32076 0.88752 1.26138 0.96825 0.94331 0.96114 1.69689 1.38722 0.99128 1.35524 0.86466 0.80631 0.79335 0.80324 1.19341 1.21808 1.16898 0.93434 0.93991 0.91486 0.88494 0.88362 0.84625 0.85020 0.93782 0.89425 0.95397 0.92115 0.89663 0.91251 0.91298 0.95795 0.84683 0.87522 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.40 36.00 0.34 -1.42 16 2 C -0.17 -3.78 5.94 -103.86 -0.62 -4.40 16 3 C -0.08 -1.70 9.66 -39.72 -0.38 -2.09 16 4 C -0.22 -4.35 9.43 -38.97 -0.37 -4.71 16 5 C -0.03 -0.59 5.86 -104.97 -0.62 -1.21 16 6 C -0.02 -0.42 5.87 -104.89 -0.62 -1.03 16 7 C -0.09 -1.65 9.41 -39.27 -0.37 -2.02 16 8 C -0.15 -2.25 10.01 -39.56 -0.40 -2.64 16 9 C 0.08 1.18 5.93 -39.35 -0.23 0.95 16 10 F -0.14 -1.99 13.16 2.25 0.03 -1.96 16 11 C -0.11 -1.60 5.28 -104.60 -0.55 -2.15 16 12 C 0.10 1.20 5.04 -4.98 -0.03 1.18 16 13 N -0.54 -6.58 5.01 -252.72 -1.27 -7.85 16 14 C 0.01 0.12 7.99 60.06 0.48 0.60 16 15 C 0.02 0.23 9.57 60.07 0.57 0.80 16 16 C -0.08 -1.19 9.03 -39.27 -0.35 -1.55 16 17 C -0.22 -5.08 6.65 -38.53 -0.26 -5.33 16 18 C 0.09 2.24 5.12 -106.87 -0.55 1.69 16 19 C -0.44 -11.51 8.55 -37.74 -0.32 -11.83 16 20 H 0.09 2.54 7.17 -52.49 -0.38 2.16 16 21 C 0.08 2.15 5.41 -17.34 -0.09 2.06 16 22 N -0.81 -20.90 13.93 55.55 0.77 -20.13 16 23 Si 0.91 20.27 24.55 -169.99 -4.17 16.10 16 24 H -0.27 -5.65 5.83 56.52 0.33 -5.32 16 25 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.25 -5.70 7.04 56.52 0.40 -5.30 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.07 1.36 6.82 -51.93 -0.35 1.00 16 30 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.10 1.68 6.22 -52.49 -0.33 1.35 16 32 H 0.14 2.46 5.61 -52.48 -0.29 2.17 16 33 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.04 0.52 8.06 -51.93 -0.42 0.11 16 35 H 0.09 0.95 7.87 -51.93 -0.41 0.54 16 36 H 0.03 0.32 7.74 -51.93 -0.40 -0.09 16 37 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.08 1.13 4.61 -51.93 -0.24 0.89 16 39 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 40 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 41 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.14 1.95 6.17 -52.49 -0.32 1.62 16 43 H 0.11 2.46 2.75 -52.49 -0.14 2.32 16 44 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -26.56 346.94 -9.64 -36.20 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.87 Total: 5.52 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -4.36 Total: -33.11 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: -0.49 Total: -27.98 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.03 Total: -1.96 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.17 Total: 16.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.56 -9.64 -36.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596647022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.955 kcal (2) G-P(sol) polarization free energy of solvation -26.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds