Wall clock time and date at job start Fri Apr 10 2020 22:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37727 * 120.00552 * 2 1 4 4 C 1.38382 * 120.37721 * 179.70419 * 3 2 1 5 5 C 1.39732 * 120.38355 * 0.55840 * 4 3 2 6 6 C 1.48395 * 120.00455 * 179.71902 * 5 4 3 7 7 C 1.39362 * 120.09659 * 174.05241 * 6 5 4 8 8 C 1.37949 * 119.90570 * 179.76771 * 7 6 5 9 9 C 1.38573 * 120.09547 * 0.50879 * 8 7 6 10 10 F 1.35097 * 119.90499 * 179.76415 * 9 8 7 11 11 C 1.38525 * 120.18667 * 359.74462 * 9 8 7 12 12 C 1.50701 * 119.94999 * 179.97438 * 11 9 8 13 13 N 1.46897 * 109.47266 * 285.02420 * 12 11 9 14 14 C 1.46900 * 111.00292 * 66.04552 * 13 12 11 15 15 C 1.46908 * 111.00027 * 190.00058 * 13 12 11 16 16 C 1.38000 * 120.09888 * 0.02562 * 11 9 8 17 17 C 1.38738 * 119.99495 * 359.44580 * 5 4 3 18 18 C 1.40538 * 119.62567 * 0.27126 * 17 5 4 19 19 C 1.41424 * 120.18929 * 180.02562 * 18 17 5 20 20 H 1.08002 * 120.00395 * 150.85792 * 19 18 17 21 21 C 1.39932 * 119.99804 * 330.86708 * 19 18 17 22 22 N 1.30832 * 120.00195 * 161.77916 * 21 19 18 23 23 Si 1.86796 * 119.99918 * 341.77271 * 21 19 18 24 24 H 1.48503 * 109.46871 * 90.54110 * 23 21 19 25 25 H 1.48500 * 109.47289 * 210.53581 * 23 21 19 26 26 H 1.48498 * 109.47469 * 330.54043 * 23 21 19 27 27 H 1.09006 * 109.46847 * 270.01997 * 1 2 3 28 28 H 1.09000 * 109.47401 * 30.01663 * 1 2 3 29 29 H 1.08997 * 109.47314 * 150.01979 * 1 2 3 30 30 H 1.08001 * 119.80834 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.81207 * 180.27762 * 4 3 2 32 32 H 1.08003 * 120.04614 * 0.02659 * 7 6 5 33 33 H 1.08002 * 119.95294 * 180.23403 * 8 7 6 34 34 H 1.08999 * 109.47273 * 45.02474 * 12 11 9 35 35 H 1.09001 * 109.46826 * 165.02557 * 12 11 9 36 36 H 1.09005 * 109.46646 * 60.00023 * 14 13 12 37 37 H 1.09001 * 109.47262 * 180.02562 * 14 13 12 38 38 H 1.08998 * 109.46759 * 300.00368 * 14 13 12 39 39 H 1.08998 * 109.46669 * 60.00137 * 15 13 12 40 40 H 1.08995 * 109.46914 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.47131 * 299.99824 * 15 13 12 42 42 H 1.07997 * 120.05161 * 179.97438 * 16 11 9 43 43 H 1.07997 * 120.18877 * 180.30233 * 17 5 4 44 44 H 0.96993 * 120.00618 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1927 0.0000 4 6 3.5795 1.2017 0.0062 5 6 4.2941 0.0009 0.0007 6 6 5.7779 0.0204 0.0011 7 6 6.4924 -1.1701 0.1206 8 6 7.8717 -1.1479 0.1157 9 6 8.5469 0.0569 0.0027 10 9 9.8977 0.0746 0.0031 11 6 7.8406 1.2431 -0.1110 12 6 8.5803 2.5504 -0.2330 13 7 9.1305 2.9258 1.0763 14 6 10.1668 1.9765 1.5037 15 6 9.6514 4.2993 1.0543 16 6 6.4607 1.2296 -0.1117 17 6 3.6162 -1.2096 0.0007 18 6 2.2109 -1.2189 0.0004 19 6 1.5078 -2.4460 0.0009 20 1 0.5304 -2.5082 0.4561 21 6 2.0786 -3.5796 -0.5884 22 7 1.6238 -4.7700 -0.2923 23 14 3.4898 -3.3932 -1.7979 24 1 4.7802 -3.4442 -1.0647 25 1 3.4405 -4.4969 -2.7901 26 1 3.3709 -2.0903 -2.5005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6527 2.1262 -0.0004 31 1 4.1103 2.1422 0.0106 32 1 5.9670 -2.1092 0.2128 33 1 8.4262 -2.0705 0.2045 34 1 9.3930 2.4424 -0.9512 35 1 7.8942 3.3255 -0.5746 36 1 10.9762 1.9692 0.7735 37 1 10.5568 2.2777 2.4759 38 1 9.7362 0.9780 1.5787 39 1 8.8460 4.9893 0.8028 40 1 10.0522 4.5515 2.0360 41 1 10.4420 4.3761 0.3080 42 1 5.9108 2.1549 -0.2000 43 1 4.1654 -2.1395 0.0014 44 1 2.0192 -5.5558 -0.7009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596647022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:58 Heat of formation + Delta-G solvation = -8.306637 kcal Electronic energy + Delta-G solvation = -25486.631596 eV Core-core repulsion = 21896.347419 eV Total energy + Delta-G solvation = -3590.284176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.154 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.17569 -40.77739 -39.42601 -38.01794 -35.56006 -34.18981 -33.03194 -32.12305 -30.86040 -28.53978 -28.25677 -27.39618 -26.38810 -24.21389 -23.67092 -22.98773 -21.90624 -20.70290 -19.20423 -18.80670 -17.72489 -17.57736 -17.35905 -16.55252 -16.36485 -15.95021 -15.74831 -15.56515 -15.38988 -15.01902 -14.74994 -14.55359 -14.40528 -14.25289 -13.90013 -13.73874 -13.62612 -13.32738 -13.13145 -12.90302 -12.84467 -12.72137 -12.62615 -12.47272 -12.33760 -12.12384 -12.00795 -11.94851 -11.45389 -11.35960 -10.93546 -10.15858 -10.04418 -9.46227 -9.32534 -8.88462 -8.66099 -6.44866 -0.27204 0.19348 0.85593 1.00437 1.22755 1.38002 1.45272 2.09030 2.41877 2.77202 3.14682 3.17928 3.54406 3.56098 3.70448 3.76806 4.13081 4.18766 4.25418 4.27797 4.38062 4.46608 4.51096 4.54231 4.58942 4.68267 4.74416 4.78355 4.83135 4.93506 5.01333 5.02196 5.02739 5.03865 5.09426 5.14697 5.22279 5.27654 5.31986 5.49857 5.67967 5.81135 5.90157 5.95874 5.96777 6.05544 6.08641 6.29574 6.44214 6.78299 6.88276 8.20127 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.003946 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.163473 B = 7093.267185 C = 8363.020785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.186 4.186 3 C -0.086 4.086 4 C -0.204 4.204 5 C -0.035 4.035 6 C -0.049 4.049 7 C -0.108 4.108 8 C -0.147 4.147 9 C 0.086 3.914 10 F -0.135 7.135 11 C -0.106 4.106 12 C 0.099 3.901 13 N -0.557 5.557 14 C 0.012 3.988 15 C 0.024 3.976 16 C -0.068 4.068 17 C -0.237 4.237 18 C 0.068 3.932 19 C -0.476 4.476 20 H 0.065 0.935 21 C 0.052 3.948 22 N -0.850 5.850 23 Si 0.951 3.049 24 H -0.254 1.254 25 H -0.281 1.281 26 H -0.260 1.260 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.152 0.848 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.031 0.969 42 H 0.155 0.845 43 H 0.100 0.900 44 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.014 14.060 -0.811 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.188 4.188 3 C -0.104 4.104 4 C -0.223 4.223 5 C -0.035 4.035 6 C -0.049 4.049 7 C -0.126 4.126 8 C -0.166 4.166 9 C 0.066 3.934 10 F -0.114 7.114 11 C -0.107 4.107 12 C -0.028 4.028 13 N -0.281 5.281 14 C -0.136 4.136 15 C -0.123 4.123 16 C -0.086 4.086 17 C -0.256 4.256 18 C 0.066 3.934 19 C -0.505 4.505 20 H 0.083 0.917 21 C -0.162 4.162 22 N -0.477 5.477 23 Si 0.776 3.224 24 H -0.179 1.179 25 H -0.208 1.208 26 H -0.184 1.184 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.138 0.862 33 H 0.169 0.831 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.050 0.950 42 H 0.172 0.828 43 H 0.117 0.883 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.645 13.768 -0.468 20.106 hybrid contribution 0.979 -1.009 -0.825 1.630 sum 15.624 12.759 -1.292 20.213 Atomic orbital electron populations 1.20466 0.91507 1.01570 1.00835 1.20297 0.96322 0.92749 1.09390 1.20878 0.94091 0.96885 0.98537 1.20951 0.93904 0.96409 1.11016 1.18605 0.90843 0.93808 1.00224 1.19136 0.92482 0.93810 0.99498 1.21271 0.93691 0.98407 0.99250 1.21143 0.94196 0.97871 1.03342 1.17548 0.76653 0.94412 1.04782 1.91432 1.28952 1.97297 1.93712 1.19838 0.93907 0.94260 1.02720 1.21005 0.98153 0.93317 0.90364 1.62039 1.35039 1.03889 1.27143 1.22899 0.93125 0.97258 1.00359 1.22453 0.99587 0.88218 1.02048 1.21131 0.92290 0.97849 0.97338 1.21281 0.94251 0.96598 1.13457 1.17736 0.91728 0.93266 0.90703 1.19436 1.04277 0.92577 1.34259 0.91680 1.26667 0.98577 0.93965 0.97026 1.69722 1.40776 0.99722 1.37512 0.85758 0.79234 0.78564 0.78828 1.17908 1.20766 1.18372 0.92813 0.90840 0.93531 0.84757 0.84678 0.86168 0.83055 0.93245 0.87578 0.95116 0.91050 0.91438 0.90210 0.90539 0.95041 0.82787 0.88270 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.35 9.40 71.23 0.67 -2.68 16 2 C -0.19 -8.17 5.94 -19.37 -0.12 -8.28 16 3 C -0.09 -3.21 9.66 22.18 0.21 -3.00 16 4 C -0.20 -7.43 9.43 22.67 0.21 -7.21 16 5 C -0.03 -1.42 5.86 -20.09 -0.12 -1.53 16 6 C -0.05 -1.72 5.87 -20.04 -0.12 -1.84 16 7 C -0.11 -3.71 9.41 22.47 0.21 -3.49 16 8 C -0.15 -4.23 10.01 22.28 0.22 -4.00 16 9 C 0.09 2.32 5.93 22.42 0.13 2.45 16 10 F -0.14 -3.41 13.16 44.97 0.59 -2.81 16 11 C -0.11 -2.74 5.28 -19.85 -0.10 -2.85 16 12 C 0.10 2.03 5.04 85.56 0.43 2.46 16 13 N -0.56 -11.50 5.01 -953.46 -4.78 -16.28 16 14 C 0.01 0.24 7.99 127.69 1.02 1.26 16 15 C 0.02 0.36 9.57 127.69 1.22 1.58 16 16 C -0.07 -1.93 9.03 22.47 0.20 -1.73 16 17 C -0.24 -11.16 6.65 22.95 0.15 -11.01 16 18 C 0.07 3.41 5.12 -21.32 -0.11 3.30 16 19 C -0.48 -26.19 8.55 23.47 0.20 -25.99 16 20 H 0.07 3.81 7.17 -2.91 -0.02 3.79 16 21 C 0.05 2.78 5.41 85.25 0.46 3.24 16 22 N -0.85 -46.69 13.93 21.82 0.30 -46.39 16 23 Si 0.95 43.28 24.55 68.60 1.68 44.97 16 24 H -0.25 -10.79 5.83 99.48 0.58 -10.21 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.26 -12.21 7.04 99.48 0.70 -11.51 16 27 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 29 H 0.05 1.96 6.82 -2.39 -0.02 1.94 16 30 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 31 H 0.14 3.89 6.22 -2.91 -0.02 3.88 16 32 H 0.12 4.44 5.61 -2.91 -0.02 4.43 16 33 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 34 H 0.05 0.98 8.06 -2.39 -0.02 0.96 16 35 H 0.11 1.79 7.87 -2.39 -0.02 1.77 16 36 H 0.03 0.60 7.74 -2.38 -0.02 0.59 16 37 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 38 H 0.07 1.62 4.61 -2.39 -0.01 1.61 16 39 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 40 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 41 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.15 3.69 6.17 -2.91 -0.02 3.67 16 43 H 0.10 4.73 2.75 -2.91 -0.01 4.72 16 44 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 Total: -1.00 -59.88 346.94 3.49 -56.39 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.89 Total: 23.45 kcal Atomic # 6 Polarization: -64.12 SS G_CDS: 4.79 Total: -59.32 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -4.47 Total: -62.67 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.59 Total: -2.81 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.68 Total: 44.97 kcal Total: -59.88 3.49 -56.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596647022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.086 kcal (2) G-P(sol) polarization free energy of solvation -59.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds