Wall clock time and date at job start Fri Apr 10 2020 22:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50697 * 109.47260 * 56.19001 * 3 2 1 5 5 C 1.38305 * 119.96510 * 89.99610 * 4 3 2 6 6 C 1.38259 * 120.14615 * 179.97438 * 5 4 3 7 7 C 1.38145 * 120.06363 * 0.02562 * 6 5 4 8 8 C 1.38838 * 119.93040 * 359.97438 * 7 6 5 9 9 N 1.39944 * 120.07204 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99516 * 33.06978 * 9 8 7 11 11 O 1.21583 * 120.00342 * 7.32096 * 10 9 8 12 12 N 1.34780 * 119.99687 * 187.32264 * 10 9 8 13 13 C 1.46924 * 120.63147 * 355.67133 * 12 10 9 14 14 C 1.53195 * 108.77471 * 126.41180 * 13 12 10 15 15 C 1.53044 * 109.31200 * 54.63703 * 14 13 12 16 16 C 1.53036 * 109.53627 * 298.62991 * 15 14 13 17 17 H 1.09003 * 109.52604 * 301.40232 * 16 15 14 18 18 C 1.50697 * 109.49940 * 181.31436 * 16 15 14 19 19 H 1.08001 * 119.99717 * 0.17073 * 18 16 15 20 20 C 1.37875 * 120.00340 * 180.43448 * 18 16 15 21 21 N 1.31519 * 119.99975 * 359.73406 * 20 18 16 22 22 Si 1.86801 * 120.00385 * 179.72991 * 20 18 16 23 23 H 1.48502 * 109.47090 * 90.00119 * 22 20 18 24 24 H 1.48500 * 109.47209 * 210.00637 * 22 20 18 25 25 H 1.48500 * 109.46829 * 330.00272 * 22 20 18 26 26 C 1.46927 * 120.62787 * 175.69057 * 12 10 9 27 27 C 1.38089 * 119.96836 * 270.25845 * 4 3 2 28 28 H 1.09000 * 109.46898 * 296.19207 * 3 2 1 29 29 H 1.08998 * 109.46930 * 176.19430 * 3 2 1 30 30 H 1.08007 * 119.92749 * 0.02639 * 5 4 3 31 31 H 1.07992 * 119.97076 * 179.97438 * 6 5 4 32 32 H 1.07997 * 120.03270 * 179.97438 * 7 6 5 33 33 H 0.96997 * 120.00285 * 213.07049 * 9 8 7 34 34 H 1.09003 * 109.58431 * 246.20132 * 13 12 10 35 35 H 1.09000 * 109.58620 * 6.62227 * 13 12 10 36 36 H 1.09005 * 109.49294 * 174.58409 * 14 13 12 37 37 H 1.08997 * 109.49948 * 294.68038 * 14 13 12 38 38 H 1.08996 * 109.45747 * 178.61137 * 15 14 13 39 39 H 1.08998 * 109.46382 * 58.65487 * 15 14 13 40 40 H 0.96996 * 120.00008 * 179.97438 * 21 20 18 41 41 H 1.08997 * 109.58712 * 113.80238 * 26 12 10 42 42 H 1.09001 * 109.70830 * 353.44551 * 26 12 10 43 43 H 1.08004 * 120.03433 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1108 -0.7897 -1.1805 5 6 3.3407 -0.1565 -2.3884 6 6 3.8024 -0.8778 -3.4737 7 6 4.0351 -2.2343 -3.3547 8 6 3.8052 -2.8730 -2.1436 9 7 4.0394 -4.2471 -2.0198 10 6 5.0346 -4.8268 -2.7200 11 8 5.8117 -4.1399 -3.3544 12 7 5.1682 -6.1679 -2.7169 13 6 4.2969 -7.0051 -1.8811 14 6 3.6399 -8.0696 -2.7655 15 6 4.7255 -8.8450 -3.5153 16 6 5.5101 -7.8871 -4.4146 17 1 4.8289 -7.4065 -5.1169 18 6 6.5577 -8.6569 -5.1768 19 1 6.6528 -9.7235 -5.0363 20 6 7.3983 -7.9989 -6.0492 21 7 7.2825 -6.7000 -6.2203 22 14 8.7019 -8.9520 -6.9883 23 1 8.1374 -9.4229 -8.2786 24 1 9.8674 -8.0699 -7.2503 25 1 9.1371 -10.1209 -6.1824 26 6 6.1883 -6.8205 -3.5490 27 6 3.3363 -2.1464 -1.0567 28 1 2.9716 -0.4528 0.9221 29 1 2.9709 1.0262 -0.0682 30 1 3.1600 0.9041 -2.4838 31 1 3.9806 -0.3806 -4.4157 32 1 4.3953 -2.7974 -4.2029 33 1 3.4856 -4.7824 -1.4303 34 1 4.8902 -7.4896 -1.1056 35 1 3.5267 -6.3858 -1.4213 36 1 3.0664 -8.7564 -2.1429 37 1 2.9759 -7.5873 -3.4829 38 1 4.2621 -9.6194 -4.1266 39 1 5.4035 -9.3067 -2.7975 40 1 7.8742 -6.2370 -6.8338 41 1 6.9358 -7.2900 -2.9096 42 1 6.6683 -6.0808 -4.1897 43 1 3.1521 -2.6413 -0.1145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596929605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:03 Heat of formation + Delta-G solvation = 25.500903 kcal Electronic energy + Delta-G solvation = -25307.299603 eV Core-core repulsion = 21738.401393 eV Total energy + Delta-G solvation = -3568.898210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53348 -39.09171 -37.18696 -36.60933 -34.68173 -33.45341 -32.68324 -31.82430 -30.03592 -29.41597 -27.80315 -25.15031 -24.74228 -22.53754 -22.16397 -21.86765 -20.00943 -18.94007 -18.22098 -17.72282 -16.82391 -16.25634 -16.12001 -15.64958 -14.97390 -14.77247 -14.56749 -14.21557 -13.98539 -13.84425 -13.62971 -13.46442 -13.34357 -12.95017 -12.70780 -12.54355 -12.45006 -12.14823 -12.02034 -11.93381 -11.59498 -11.19414 -11.03634 -10.96463 -10.55840 -10.47095 -10.31060 -10.14086 -9.94994 -9.57951 -9.17008 -9.02880 -8.85983 -8.46522 -8.08809 -7.71605 -6.03026 -4.11767 1.25678 1.35343 2.54098 2.54364 2.96679 3.29408 3.36797 3.38703 3.44780 3.76950 4.05879 4.16350 4.41038 4.52373 4.70790 4.96331 5.11812 5.14238 5.19827 5.27267 5.36445 5.40003 5.49848 5.55692 5.67981 5.87748 5.90751 6.07675 6.24146 6.30947 6.32021 6.51382 6.54849 6.59177 6.64641 6.74962 6.91567 6.97600 7.12196 7.22378 7.31953 7.34723 7.67006 7.85206 7.99219 8.34466 8.36195 8.91168 9.01314 9.54067 11.02226 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022208 B = 0.002999 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.515051 B = 9334.629510 C =10261.316006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.211 3.789 3 C 0.021 3.979 4 C -0.080 4.080 5 C -0.132 4.132 6 C -0.096 4.096 7 C -0.113 4.113 8 C 0.184 3.816 9 N -0.697 5.697 10 C 0.698 3.302 11 O -0.564 6.564 12 N -0.616 5.616 13 C 0.112 3.888 14 C -0.134 4.134 15 C -0.110 4.110 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.880 5.880 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.127 3.873 27 C -0.144 4.144 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.402 0.598 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.264 0.736 41 H 0.042 0.958 42 H 0.125 0.875 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 9.664 12.694 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.107 4.107 3 C -0.019 4.019 4 C -0.082 4.082 5 C -0.151 4.151 6 C -0.115 4.115 7 C -0.133 4.133 8 C 0.087 3.913 9 N -0.347 5.347 10 C 0.400 3.600 11 O -0.440 6.440 12 N -0.351 5.351 13 C -0.012 4.012 14 C -0.172 4.172 15 C -0.148 4.148 16 C 0.020 3.980 17 H 0.047 0.953 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 C 0.007 3.993 27 C -0.166 4.166 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.159 0.841 33 H 0.240 0.760 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.143 0.857 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.583 10.194 12.096 17.997 hybrid contribution 0.880 -0.909 -0.216 1.284 sum -7.703 9.285 11.880 16.932 Atomic orbital electron populations 1.81234 1.13008 1.08677 1.08533 1.29104 0.95075 0.93254 0.93218 1.18138 0.81595 1.03151 0.99034 1.19027 1.01796 0.93082 0.94312 1.20934 1.01788 0.99895 0.92532 1.21035 0.98051 0.93655 0.98765 1.21402 0.99535 0.95215 0.97167 1.17499 0.97462 0.82963 0.93331 1.43044 1.35662 1.06900 1.49061 1.15949 0.80949 0.82833 0.80260 1.90949 1.44455 1.61678 1.46886 1.47872 1.38002 1.02828 1.46443 1.21567 0.92980 0.93176 0.93442 1.21951 0.98873 0.97498 0.98870 1.21622 0.96237 0.98504 0.98457 1.18992 0.94766 0.91829 0.92377 0.95309 1.21063 1.16915 0.94222 1.23795 0.92327 1.25054 0.97470 0.94929 0.96562 1.69874 1.38334 1.07378 1.36118 0.86588 0.81344 0.79803 0.80240 1.20688 1.21148 1.19914 1.22282 0.87777 0.97791 0.91448 1.20661 1.05195 0.93277 0.97434 0.86459 0.86321 0.85940 0.85553 0.84105 0.76049 0.91713 0.92210 0.92151 0.92101 0.92931 0.93097 0.92605 0.93982 0.85742 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.36 18.54 42.15 0.78 -4.58 16 2 C 0.21 1.87 15.42 -20.76 -0.32 1.55 16 3 C 0.02 0.11 5.83 -30.67 -0.18 -0.07 16 4 C -0.08 -0.71 5.09 -104.65 -0.53 -1.24 16 5 C -0.13 -1.27 9.70 -39.55 -0.38 -1.65 16 6 C -0.10 -1.15 10.04 -39.61 -0.40 -1.55 16 7 C -0.11 -1.70 8.65 -39.39 -0.34 -2.05 16 8 C 0.18 2.56 6.27 -83.69 -0.52 2.04 16 9 N -0.70 -10.16 5.25 -14.22 -0.07 -10.24 16 10 C 0.70 13.51 8.01 -86.91 -0.70 12.82 16 11 O -0.56 -13.24 13.54 5.29 0.07 -13.17 16 12 N -0.62 -11.75 2.97 -178.49 -0.53 -12.28 16 13 C 0.11 1.61 6.42 -3.71 -0.02 1.59 16 14 C -0.13 -2.02 6.08 -26.61 -0.16 -2.18 16 15 C -0.11 -2.10 5.11 -26.69 -0.14 -2.24 16 16 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 17 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.52 -13.77 8.57 -34.44 -0.30 -14.07 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 21 N -0.88 -25.08 11.38 55.43 0.63 -24.45 16 22 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.13 2.97 5.38 -3.71 -0.02 2.95 16 27 C -0.14 -1.51 9.62 -39.39 -0.38 -1.89 16 28 H 0.12 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.12 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.14 2.57 6.46 -52.49 -0.34 2.24 16 33 H 0.40 4.57 6.29 -40.82 -0.26 4.31 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.66 5.58 -51.93 -0.29 0.37 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.12 3.43 5.14 -51.93 -0.27 3.16 16 43 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -33.11 357.13 -9.21 -42.32 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.76 Total: 4.76 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -4.69 Total: -3.63 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.81 Total: -51.55 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.17 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.11 -9.21 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596929605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.820 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds