Wall clock time and date at job start Fri Apr 10 2020 22:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86793 * 119.99878 * 2 1 4 4 H 1.48509 * 109.47190 * 240.00308 * 3 2 1 5 5 H 1.48502 * 109.47500 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47124 * 120.00475 * 3 2 1 7 7 C 1.37870 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00049 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00380 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.52565 * 299.92041 * 9 7 2 11 11 C 1.53035 * 109.50156 * 179.83725 * 9 7 2 12 12 C 1.53036 * 109.53955 * 178.68122 * 11 9 7 13 13 C 1.52760 * 109.38235 * 61.24292 * 12 11 9 14 14 N 1.46921 * 109.00994 * 305.58739 * 13 12 11 15 15 C 1.34777 * 120.63392 * 233.58899 * 14 13 12 16 16 O 1.21283 * 120.00463 * 179.71854 * 15 14 13 17 17 C 1.50700 * 119.99675 * 359.43977 * 15 14 13 18 18 C 1.50703 * 109.47148 * 180.28037 * 17 15 14 19 19 C 1.38547 * 126.21391 * 265.02652 * 18 17 15 20 20 N 1.31480 * 109.00739 * 179.97438 * 19 18 17 21 21 N 1.40042 * 108.91793 * 359.97438 * 20 19 18 22 22 C 1.36536 * 132.43567 * 180.02562 * 21 20 19 23 23 C 1.34933 * 120.65857 * 179.27948 * 22 21 20 24 24 C 1.40479 * 120.43221 * 0.59926 * 23 22 21 25 25 C 1.36071 * 119.58611 * 359.62815 * 24 23 22 26 26 C 1.37130 * 107.44231 * 359.77501 * 21 20 19 27 27 C 1.46924 * 118.73733 * 53.30469 * 14 13 12 28 28 H 0.97001 * 119.99828 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.45896 * 298.70646 * 11 9 7 30 30 H 1.08997 * 109.45794 * 58.67313 * 11 9 7 31 31 H 1.09005 * 109.49884 * 181.31410 * 12 11 9 32 32 H 1.08994 * 109.49896 * 301.38301 * 12 11 9 33 33 H 1.09004 * 109.51010 * 185.70602 * 13 12 11 34 34 H 1.09002 * 109.43306 * 65.42285 * 13 12 11 35 35 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 36 36 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 37 37 H 1.08001 * 125.49779 * 359.97438 * 19 18 17 38 38 H 1.08001 * 119.66657 * 359.95395 * 22 21 20 39 39 H 1.07997 * 119.78519 * 180.22479 * 23 22 21 40 40 H 1.07993 * 120.20852 * 179.60055 * 24 23 22 41 41 H 1.07995 * 120.37974 * 179.97438 * 25 24 23 42 42 H 1.09006 * 109.58353 * 66.44111 * 27 14 13 43 43 H 1.09008 * 109.58903 * 186.85526 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6256 -2.5587 0.8901 11 6 2.2450 -3.6628 -0.0053 12 6 1.4812 -4.9885 0.0279 13 6 0.6018 -5.0982 -1.2164 14 7 -0.2565 -3.9089 -1.3023 15 6 -1.5932 -4.0337 -1.4202 16 8 -2.2914 -3.0441 -1.4851 17 6 -2.2199 -5.4030 -1.4778 18 6 -3.7143 -5.2662 -1.6161 19 6 -4.6374 -5.2880 -0.5832 20 7 -5.8440 -5.1399 -1.0840 21 7 -5.7459 -5.0147 -2.4753 22 6 -6.6832 -4.8428 -3.4532 23 6 -6.3157 -4.7346 -4.7470 24 6 -4.9609 -4.8099 -5.1106 25 6 -4.0156 -4.9856 -4.1478 26 6 -4.4162 -5.0885 -2.8019 27 6 0.3696 -2.5807 -1.2508 28 1 -0.4850 0.8401 0.0004 29 1 2.8537 -3.6168 -0.9084 30 1 2.8896 -3.5933 0.8709 31 1 2.1899 -5.8164 0.0481 32 1 0.8539 -5.0248 0.9185 33 1 -0.0182 -5.9920 -1.1463 34 1 1.2335 -5.1577 -2.1027 35 1 -1.8241 -5.9480 -2.3349 36 1 -1.9881 -5.9476 -0.5625 37 1 -4.4035 -5.4075 0.4644 38 1 -7.7281 -4.7819 -3.1873 39 1 -7.0686 -4.5953 -5.5087 40 1 -4.6714 -4.7294 -6.1479 41 1 -2.9705 -5.0456 -4.4129 42 1 0.9819 -2.4307 -2.1401 43 1 -0.4036 -1.8138 -1.2035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:12 Heat of formation + Delta-G solvation = 65.384574 kcal Electronic energy + Delta-G solvation = -25860.686753 eV Core-core repulsion = 22293.518029 eV Total energy + Delta-G solvation = -3567.168724 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95804 -39.28061 -37.27824 -36.55120 -33.55608 -33.23301 -31.73317 -30.78074 -30.56267 -29.62259 -26.76387 -24.98797 -24.13379 -23.77532 -22.53650 -21.77367 -20.87478 -19.55212 -18.08387 -17.16436 -16.72515 -16.70412 -16.05677 -15.91321 -15.39834 -14.92229 -14.87808 -14.52875 -14.39973 -13.64678 -13.45222 -13.35675 -13.02137 -12.63587 -12.53781 -12.45131 -12.08507 -11.87092 -11.76932 -11.73029 -11.44570 -10.96448 -10.87085 -10.57474 -10.51196 -10.37473 -10.33856 -10.19854 -9.84729 -9.29065 -9.18615 -9.06678 -8.80623 -8.39536 -7.64954 -7.42716 -5.96241 -4.05496 0.75427 1.12045 2.30819 2.77158 3.32848 3.35991 3.39432 3.39961 3.40775 3.93680 4.23557 4.45272 4.61913 4.67742 4.84008 4.99070 5.19352 5.25335 5.29703 5.33663 5.41244 5.48705 5.54868 5.57540 5.70711 5.73269 5.85981 6.02319 6.04629 6.20933 6.23546 6.34732 6.35583 6.60606 6.65229 6.72409 6.89904 6.91655 7.01267 7.21684 7.37991 7.62502 7.68796 7.92319 8.04837 8.36239 8.43467 8.96882 9.05415 9.60033 11.08671 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.003558 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.537249 B = 7867.811777 C = 8620.336218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.135 4.135 13 C 0.109 3.891 14 N -0.610 5.610 15 C 0.502 3.498 16 O -0.530 6.530 17 C -0.057 4.057 18 C -0.220 4.220 19 C 0.093 3.907 20 N -0.324 5.324 21 N -0.276 5.276 22 C 0.109 3.891 23 C -0.168 4.168 24 C -0.092 4.092 25 C -0.101 4.101 26 C 0.115 3.885 27 C 0.113 3.887 28 H 0.264 0.736 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.190 0.810 38 H 0.164 0.836 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.039 0.961 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.193 -15.350 -8.720 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.173 4.173 13 C -0.015 4.015 14 N -0.344 5.344 15 C 0.289 3.711 16 O -0.406 6.406 17 C -0.098 4.098 18 C -0.231 4.231 19 C -0.084 4.084 20 N -0.147 5.147 21 N -0.043 5.043 22 C -0.016 4.016 23 C -0.190 4.190 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.004 4.004 27 C -0.007 4.007 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.206 0.794 38 H 0.182 0.818 39 H 0.169 0.831 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.057 0.943 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.015 -14.610 -8.326 19.572 hybrid contribution 1.428 0.949 -0.114 1.719 sum -8.587 -13.661 -8.440 18.209 Atomic orbital electron populations 1.69890 1.05712 1.26886 1.49217 1.25050 0.94855 0.99197 0.94881 0.86671 0.79578 0.83274 0.78556 1.20258 1.21290 1.20293 1.21049 0.92838 0.90230 1.51998 0.92485 1.18953 0.92601 0.92178 0.94134 0.95408 1.21620 0.98560 0.94173 1.00469 1.21875 0.98643 0.99044 0.97721 1.21535 0.93586 0.87962 0.98380 1.48522 1.05419 1.08679 1.71748 1.20524 0.82194 0.90973 0.77418 1.90715 1.61055 1.39607 1.49193 1.19924 0.89897 0.96181 1.03786 1.19316 0.95198 1.18334 0.90279 1.23626 0.89248 0.95341 1.00158 1.77825 1.22084 1.31195 0.83580 1.46094 1.05539 1.46144 1.06484 1.21414 0.94452 0.99446 0.86260 1.20774 0.97523 1.06168 0.94522 1.21096 0.92374 0.97953 1.00094 1.20613 1.01038 1.01275 0.89165 1.19246 0.84418 1.01555 0.95161 1.22227 0.98608 0.81631 0.98230 0.92642 0.93255 0.93128 0.92280 0.92169 0.91090 0.92232 0.89175 0.88489 0.79350 0.81828 0.83130 0.84390 0.83916 0.94298 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.07 11.39 55.43 0.63 -25.44 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.26 8.56 -34.44 -0.29 -14.55 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.18 5.11 -26.69 -0.14 -2.31 16 12 C -0.13 -2.10 6.06 -26.84 -0.16 -2.26 16 13 C 0.11 1.62 6.31 -3.94 -0.02 1.59 16 14 N -0.61 -11.99 2.98 -173.03 -0.52 -12.50 16 15 C 0.50 9.93 7.69 -10.98 -0.08 9.84 16 16 O -0.53 -13.20 15.45 5.55 0.09 -13.11 16 17 C -0.06 -0.81 4.54 -29.03 -0.13 -0.94 16 18 C -0.22 -3.44 4.68 -104.25 -0.49 -3.93 16 19 C 0.09 1.43 11.87 -17.59 -0.21 1.22 16 20 N -0.32 -5.28 12.66 30.46 0.39 -4.89 16 21 N -0.28 -4.14 3.90 -10.71 -0.04 -4.18 16 22 C 0.11 1.21 11.19 -16.63 -0.19 1.02 16 23 C -0.17 -1.49 9.98 -39.91 -0.40 -1.89 16 24 C -0.09 -0.90 10.07 -39.52 -0.40 -1.30 16 25 C -0.10 -1.27 10.09 -39.40 -0.40 -1.66 16 26 C 0.11 1.75 6.76 -84.27 -0.57 1.18 16 27 C 0.11 2.75 5.40 -3.71 -0.02 2.73 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.81 5.94 -51.93 -0.31 0.50 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.04 7.95 -51.92 -0.41 0.63 16 36 H 0.10 1.15 7.68 -51.93 -0.40 0.75 16 37 H 0.19 2.34 8.06 -52.49 -0.42 1.92 16 38 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.12 3.49 5.12 -51.92 -0.27 3.22 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -35.53 353.13 -8.96 -44.49 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.00 Total: 2.65 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.80 Total: -8.78 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.46 Total: -47.01 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.53 -8.96 -44.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.872 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds