Wall clock time and date at job start Fri Apr 10 2020 22:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86793 * 119.99878 * 2 1 4 4 H 1.48509 * 109.47190 * 240.00308 * 3 2 1 5 5 H 1.48502 * 109.47500 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47124 * 120.00475 * 3 2 1 7 7 C 1.37870 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00049 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00380 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.52565 * 299.92041 * 9 7 2 11 11 C 1.53035 * 109.50156 * 179.83725 * 9 7 2 12 12 C 1.53036 * 109.53955 * 178.68122 * 11 9 7 13 13 C 1.52760 * 109.38235 * 61.24292 * 12 11 9 14 14 N 1.46921 * 109.00994 * 305.58739 * 13 12 11 15 15 C 1.34777 * 120.63392 * 233.58899 * 14 13 12 16 16 O 1.21283 * 120.00463 * 179.71854 * 15 14 13 17 17 C 1.50700 * 119.99675 * 359.43977 * 15 14 13 18 18 C 1.50703 * 109.47148 * 180.28037 * 17 15 14 19 19 C 1.38547 * 126.21391 * 265.02652 * 18 17 15 20 20 N 1.31480 * 109.00739 * 179.97438 * 19 18 17 21 21 N 1.40042 * 108.91793 * 359.97438 * 20 19 18 22 22 C 1.36536 * 132.43567 * 180.02562 * 21 20 19 23 23 C 1.34933 * 120.65857 * 179.27948 * 22 21 20 24 24 C 1.40479 * 120.43221 * 0.59926 * 23 22 21 25 25 C 1.36071 * 119.58611 * 359.62815 * 24 23 22 26 26 C 1.37130 * 107.44231 * 359.77501 * 21 20 19 27 27 C 1.46924 * 118.73733 * 53.30469 * 14 13 12 28 28 H 0.97001 * 119.99828 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.45896 * 298.70646 * 11 9 7 30 30 H 1.08997 * 109.45794 * 58.67313 * 11 9 7 31 31 H 1.09005 * 109.49884 * 181.31410 * 12 11 9 32 32 H 1.08994 * 109.49896 * 301.38301 * 12 11 9 33 33 H 1.09004 * 109.51010 * 185.70602 * 13 12 11 34 34 H 1.09002 * 109.43306 * 65.42285 * 13 12 11 35 35 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 36 36 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 37 37 H 1.08001 * 125.49779 * 359.97438 * 19 18 17 38 38 H 1.08001 * 119.66657 * 359.95395 * 22 21 20 39 39 H 1.07997 * 119.78519 * 180.22479 * 23 22 21 40 40 H 1.07993 * 120.20852 * 179.60055 * 24 23 22 41 41 H 1.07995 * 120.37974 * 179.97438 * 25 24 23 42 42 H 1.09006 * 109.58353 * 66.44111 * 27 14 13 43 43 H 1.09008 * 109.58903 * 186.85526 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6256 -2.5587 0.8901 11 6 2.2450 -3.6628 -0.0053 12 6 1.4812 -4.9885 0.0279 13 6 0.6018 -5.0982 -1.2164 14 7 -0.2565 -3.9089 -1.3023 15 6 -1.5932 -4.0337 -1.4202 16 8 -2.2914 -3.0441 -1.4851 17 6 -2.2199 -5.4030 -1.4778 18 6 -3.7143 -5.2662 -1.6161 19 6 -4.6374 -5.2880 -0.5832 20 7 -5.8440 -5.1399 -1.0840 21 7 -5.7459 -5.0147 -2.4753 22 6 -6.6832 -4.8428 -3.4532 23 6 -6.3157 -4.7346 -4.7470 24 6 -4.9609 -4.8099 -5.1106 25 6 -4.0156 -4.9856 -4.1478 26 6 -4.4162 -5.0885 -2.8019 27 6 0.3696 -2.5807 -1.2508 28 1 -0.4850 0.8401 0.0004 29 1 2.8537 -3.6168 -0.9084 30 1 2.8896 -3.5933 0.8709 31 1 2.1899 -5.8164 0.0481 32 1 0.8539 -5.0248 0.9185 33 1 -0.0182 -5.9920 -1.1463 34 1 1.2335 -5.1577 -2.1027 35 1 -1.8241 -5.9480 -2.3349 36 1 -1.9881 -5.9476 -0.5625 37 1 -4.4035 -5.4075 0.4644 38 1 -7.7281 -4.7819 -3.1873 39 1 -7.0686 -4.5953 -5.5087 40 1 -4.6714 -4.7294 -6.1479 41 1 -2.9705 -5.0456 -4.4129 42 1 0.9819 -2.4307 -2.1401 43 1 -0.4036 -1.8138 -1.2035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:12 Heat of formation + Delta-G solvation = 42.794148 kcal Electronic energy + Delta-G solvation = -25861.666348 eV Core-core repulsion = 22293.518029 eV Total energy + Delta-G solvation = -3568.148318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.95463 -40.82017 -38.39983 -37.97117 -35.29585 -34.46316 -33.39780 -31.96664 -31.58478 -31.16591 -28.00885 -26.84473 -25.64578 -24.66663 -23.56099 -23.35289 -22.09266 -21.07468 -19.57542 -18.50843 -18.16314 -17.75639 -17.61602 -16.83400 -16.64628 -16.45170 -16.24699 -16.08424 -15.53661 -15.13780 -14.79899 -14.64740 -14.46359 -14.13133 -14.04250 -13.73096 -13.44404 -13.22007 -12.85938 -12.77829 -12.71471 -12.57884 -12.51925 -12.23946 -12.23069 -11.75150 -11.61947 -11.58821 -11.37793 -11.05848 -10.90873 -10.55369 -10.43082 -10.26540 -9.29659 -8.43453 -8.10388 -6.28111 -0.11314 0.18528 1.38830 1.39322 1.41032 1.49347 1.66142 1.90789 2.35827 2.42690 2.58575 3.17742 3.31670 3.73287 3.90086 3.94196 3.99033 4.12985 4.20105 4.24838 4.29319 4.37090 4.44951 4.58414 4.65365 4.68449 4.75484 4.84548 4.88699 4.95125 5.00894 5.14100 5.15686 5.30723 5.32954 5.35000 5.41901 5.53196 5.56484 5.60899 5.73495 5.94018 5.97942 6.04318 6.35464 6.58168 6.83085 6.85846 7.41763 7.53104 8.92114 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.003558 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.537249 B = 7867.811777 C = 8620.336218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.017 1.017 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.103 3.897 14 N -0.613 5.613 15 C 0.496 3.504 16 O -0.594 6.594 17 C -0.038 4.038 18 C -0.253 4.253 19 C 0.077 3.923 20 N -0.361 5.361 21 N -0.285 5.285 22 C 0.080 3.920 23 C -0.150 4.150 24 C -0.075 4.075 25 C -0.134 4.134 26 C 0.100 3.900 27 C 0.127 3.873 28 H 0.258 0.742 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.205 0.795 38 H 0.187 0.813 39 H 0.197 0.803 40 H 0.176 0.824 41 H 0.152 0.848 42 H 0.031 0.969 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 -17.573 -10.902 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.002 0.998 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.019 4.019 14 N -0.345 5.345 15 C 0.285 3.715 16 O -0.474 6.474 17 C -0.078 4.078 18 C -0.265 4.265 19 C -0.098 4.098 20 N -0.185 5.185 21 N -0.052 5.052 22 C -0.044 4.044 23 C -0.171 4.171 24 C -0.098 4.098 25 C -0.153 4.153 26 C -0.019 4.019 27 C 0.004 3.996 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.221 0.779 38 H 0.204 0.796 39 H 0.214 0.786 40 H 0.194 0.806 41 H 0.169 0.831 42 H 0.050 0.950 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.240 -16.890 -10.500 21.929 hybrid contribution 1.119 1.664 0.419 2.049 sum -8.121 -15.226 -10.080 19.985 Atomic orbital electron populations 1.70114 1.07496 1.27145 1.50757 1.25906 0.95499 1.02966 0.94653 0.85634 0.78271 0.78749 0.79182 1.19027 1.21642 1.19236 1.21539 0.93291 0.91711 1.51054 0.92015 1.18889 0.93110 0.93734 0.92318 0.99836 1.21516 0.97642 0.94485 1.00721 1.21852 0.99092 0.97859 0.97788 1.21948 0.93852 0.87265 0.98825 1.48560 1.06225 1.08427 1.71325 1.21600 0.81711 0.92610 0.75579 1.90681 1.62479 1.42308 1.51953 1.19894 0.88866 0.92518 1.06561 1.19545 0.95857 1.20431 0.90663 1.23976 0.89355 0.95309 1.01120 1.77698 1.22794 1.33157 0.84844 1.46381 1.06316 1.46003 1.06512 1.22193 0.95326 1.00263 0.86639 1.21405 0.98300 1.02938 0.94456 1.21669 0.92239 0.94515 1.01365 1.20905 1.02380 1.03419 0.88643 1.19733 0.84736 1.01111 0.96346 1.21585 0.96951 0.83532 0.97524 0.93346 0.92537 0.93279 0.87703 0.93034 0.86532 0.90242 0.85742 0.85672 0.77884 0.79566 0.78629 0.80643 0.83063 0.95016 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.46 11.39 21.45 0.24 -57.22 16 2 C 0.01 0.51 5.30 84.65 0.45 0.96 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.54 -30.18 8.56 25.60 0.22 -29.96 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.04 1.98 2.25 -11.46 -0.03 1.96 16 10 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 11 C -0.11 -4.07 5.11 30.62 0.16 -3.91 16 12 C -0.13 -3.61 6.06 30.53 0.19 -3.42 16 13 C 0.10 2.71 6.31 86.22 0.54 3.25 16 14 N -0.61 -24.05 2.98 -819.72 -2.44 -26.49 16 15 C 0.50 19.88 7.69 87.66 0.67 20.55 16 16 O -0.59 -31.36 15.45 -3.04 -0.05 -31.40 16 17 C -0.04 -1.03 4.54 29.10 0.13 -0.89 16 18 C -0.25 -7.99 4.68 -19.62 -0.09 -8.08 16 19 C 0.08 2.48 11.87 84.82 1.01 3.49 16 20 N -0.36 -12.22 12.66 -57.54 -0.73 -12.94 16 21 N -0.29 -8.61 3.90 -187.79 -0.73 -9.34 16 22 C 0.08 1.66 11.19 83.20 0.93 2.59 16 23 C -0.15 -2.16 9.98 22.06 0.22 -1.94 16 24 C -0.08 -1.23 10.07 22.31 0.22 -1.00 16 25 C -0.13 -3.16 10.09 22.39 0.23 -2.94 16 26 C 0.10 3.05 6.76 39.11 0.26 3.32 16 27 C 0.13 6.43 5.40 86.36 0.47 6.89 16 28 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 31 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.12 2.07 5.94 -2.38 -0.01 2.06 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.12 2.47 7.95 -2.38 -0.02 2.45 16 36 H 0.13 2.64 7.68 -2.39 -0.02 2.62 16 37 H 0.20 5.32 8.06 -2.91 -0.02 5.29 16 38 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 42 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.07 4.38 5.12 -2.38 -0.01 4.37 16 Total: -1.00 -86.73 353.13 4.91 -81.82 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 1.01 Total: 17.56 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.58 Total: -9.14 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -3.66 Total: -106.00 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.05 Total: -31.40 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -86.73 4.91 -81.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.614 kcal (2) G-P(sol) polarization free energy of solvation -86.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds