Wall clock time and date at job start Fri Apr 10 2020 22:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35829 * 118.70197 * 2 1 4 4 C 1.40840 * 120.55527 * 180.25581 * 3 2 1 5 5 C 1.38427 * 134.90201 * 179.87181 * 4 3 2 6 6 N 1.33889 * 107.84756 * 179.70410 * 5 4 3 7 7 H 0.97001 * 125.01719 * 180.02562 * 6 5 4 8 8 N 1.39976 * 109.96020 * 0.02562 * 6 5 4 9 9 C 1.31472 * 109.01941 * 359.97438 * 8 6 5 10 10 C 1.46667 * 134.99069 * 180.02562 * 9 8 6 11 11 C 1.47168 * 120.72571 * 359.95427 * 10 9 8 12 12 O 1.21642 * 119.99684 * 53.78019 * 11 10 9 13 13 N 1.34776 * 120.00087 * 233.77895 * 11 10 9 14 14 C 1.46929 * 120.62773 * 5.54875 * 13 11 10 15 15 C 1.53629 * 108.53886 * 126.37007 * 14 13 11 16 16 C 1.53041 * 109.24102 * 54.85652 * 15 14 13 17 17 C 1.53033 * 109.53959 * 298.50965 * 16 15 14 18 18 H 1.09007 * 109.49685 * 301.41497 * 17 16 15 19 19 C 1.50697 * 109.52617 * 181.33504 * 17 16 15 20 20 H 1.07996 * 119.99983 * 0.14529 * 19 17 16 21 21 C 1.37878 * 120.00230 * 180.14343 * 19 17 16 22 22 N 1.31514 * 119.99641 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 120.00338 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46776 * 90.00193 * 23 21 19 25 25 H 1.48495 * 109.47555 * 210.00461 * 23 21 19 26 26 H 1.48496 * 109.47083 * 330.00673 * 23 21 19 27 27 C 1.46921 * 120.63153 * 185.83142 * 13 11 10 28 28 C 1.38587 * 118.54803 * 179.97438 * 10 9 8 29 29 H 1.08998 * 109.47306 * 270.20607 * 1 2 3 30 30 H 1.08999 * 109.47043 * 30.20341 * 1 2 3 31 31 H 1.08999 * 109.47119 * 150.20483 * 1 2 3 32 32 H 1.08000 * 119.72160 * 359.80516 * 3 2 1 33 33 H 1.08004 * 126.06977 * 359.68870 * 5 4 3 34 34 H 1.09002 * 109.58827 * 246.19717 * 14 13 11 35 35 H 1.09000 * 109.59080 * 6.62967 * 14 13 11 36 36 H 1.08996 * 109.63284 * 294.86492 * 15 14 13 37 37 H 1.09003 * 109.43302 * 174.72362 * 15 14 13 38 38 H 1.09002 * 109.45747 * 178.48594 * 16 15 14 39 39 H 1.09003 * 109.45763 * 58.53253 * 16 15 14 40 40 H 0.97008 * 119.99850 * 179.97438 * 22 21 19 41 41 H 1.08996 * 109.58577 * 353.37552 * 27 13 11 42 42 H 1.09000 * 109.58595 * 113.65767 * 27 13 11 43 43 H 1.08001 * 119.31820 * 180.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1593 1.1914 0.0000 4 6 3.5670 1.2369 -0.0054 5 6 4.5119 2.2485 -0.0091 6 7 5.7234 1.6785 -0.0072 7 1 6.5652 2.1603 -0.0086 8 7 5.5955 0.2846 -0.0027 9 6 4.3186 -0.0286 -0.0013 10 6 3.5586 -1.2830 0.0034 11 6 4.2509 -2.5816 0.0069 12 8 5.0871 -2.8227 0.8568 13 7 3.9585 -3.5037 -0.9315 14 6 3.0418 -3.1846 -2.0345 15 6 3.7445 -3.5063 -3.3623 16 6 4.2203 -4.9607 -3.3416 17 6 5.2269 -5.1539 -2.2052 18 1 6.0696 -4.4772 -2.3467 19 6 5.7198 -6.5780 -2.2057 20 1 5.3540 -7.2758 -2.9443 21 6 6.6379 -6.9901 -1.2632 22 7 7.0830 -6.1404 -0.3634 23 14 7.2484 -8.7555 -1.2632 24 1 8.4547 -8.8620 -2.1227 25 1 7.5913 -9.1608 0.1236 26 1 6.1845 -9.6471 -1.7908 27 6 4.5454 -4.8491 -0.8675 28 6 2.1742 -1.2185 0.0040 29 1 -0.3634 0.0037 1.0276 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3633 -0.8918 -0.5106 32 1 1.5938 2.1115 -0.0032 33 1 4.3080 3.3092 -0.0132 34 1 2.1364 -3.7845 -1.9425 35 1 2.7858 -2.1256 -2.0022 36 1 4.6012 -2.8451 -3.4928 37 1 3.0455 -3.3638 -4.1864 38 1 4.6957 -5.2007 -4.2927 39 1 3.3662 -5.6199 -3.1863 40 1 7.7287 -6.4304 0.3000 41 1 5.2818 -4.8887 -0.0649 42 1 3.7605 -5.5816 -0.6797 43 1 1.6022 -2.1346 0.0079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597914310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:19 Heat of formation + Delta-G solvation = 54.274354 kcal Electronic energy + Delta-G solvation = -26172.404014 eV Core-core repulsion = 22604.753515 eV Total energy + Delta-G solvation = -3567.650499 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26558 -39.31433 -37.39067 -36.44912 -33.36877 -32.45120 -31.69648 -31.11271 -30.19153 -29.45997 -26.55317 -25.23249 -24.94861 -23.62239 -21.82190 -21.40548 -21.09665 -19.48122 -18.41474 -17.87470 -17.07101 -16.43147 -15.90970 -15.33273 -15.01571 -14.72295 -14.60015 -14.45643 -13.85489 -13.63655 -13.50747 -13.35394 -13.06423 -12.72640 -12.48854 -12.27113 -12.12830 -11.84538 -11.76636 -11.57851 -11.33134 -10.92674 -10.81115 -10.49804 -10.41722 -10.32338 -10.18799 -10.14915 -9.79624 -9.18955 -9.03647 -8.83908 -8.71247 -8.35015 -7.65060 -7.49569 -5.91130 -4.00728 0.43467 1.77468 2.29796 2.61608 3.31922 3.36062 3.42806 3.45165 3.67010 3.97488 4.19942 4.47074 4.50414 4.86178 4.89625 5.09349 5.25121 5.30446 5.37911 5.43845 5.48680 5.53396 5.55692 5.62294 5.79071 5.87000 5.98383 6.09815 6.26961 6.28302 6.35745 6.40471 6.56463 6.69293 6.77436 6.79838 6.94576 6.99197 7.06881 7.25182 7.41032 7.58971 7.73368 7.97119 8.09043 8.36521 8.47404 8.98685 9.05039 9.64553 11.13724 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.003887 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.167347 B = 7201.461542 C = 7890.796796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.126 4.126 3 C -0.035 4.035 4 C -0.208 4.208 5 C 0.079 3.921 6 N -0.429 5.429 7 H 0.444 0.556 8 N -0.275 5.275 9 C 0.128 3.872 10 C -0.086 4.086 11 C 0.552 3.448 12 O -0.522 6.522 13 N -0.600 5.600 14 C 0.106 3.894 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.040 3.960 18 H 0.029 0.971 19 C -0.521 4.521 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.878 5.878 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.113 3.887 28 C -0.047 4.047 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.188 0.812 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.263 0.737 41 H 0.123 0.877 42 H 0.043 0.957 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.788 19.067 -1.159 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.127 4.127 3 C -0.055 4.055 4 C -0.219 4.219 5 C -0.078 4.078 6 N -0.130 5.130 7 H 0.288 0.712 8 N -0.101 5.101 9 C -0.029 4.029 10 C -0.093 4.093 11 C 0.338 3.662 12 O -0.398 6.398 13 N -0.332 5.332 14 C -0.018 4.018 15 C -0.171 4.171 16 C -0.147 4.147 17 C 0.021 3.979 18 H 0.047 0.953 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.006 4.006 28 C -0.070 4.070 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.205 0.795 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.061 0.939 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.956 18.433 -0.535 21.450 hybrid contribution 0.078 -0.246 -0.017 0.258 sum -10.878 18.187 -0.552 21.199 Atomic orbital electron populations 1.20767 0.90932 1.02660 1.02131 1.19043 0.96164 0.92303 1.05223 1.19984 0.90732 0.97460 0.97372 1.19525 0.94791 0.91491 1.16063 1.22665 0.85213 0.98864 1.01039 1.46473 1.08077 1.06079 1.52350 0.71216 1.77801 1.17044 0.87790 1.27423 1.21581 0.90094 0.93156 0.98107 1.20073 0.92367 0.90362 1.06448 1.17958 0.82568 0.83175 0.82483 1.90839 1.32027 1.78890 1.38037 1.48431 1.45944 1.14582 1.24280 1.21836 0.92397 1.00323 0.87254 1.22011 0.99880 0.99486 0.95727 1.21622 0.99598 0.93110 1.00417 1.18957 0.92818 0.96942 0.89202 0.95336 1.21074 1.24645 0.95420 1.14855 0.92402 1.25064 0.96110 0.97342 0.95528 1.69911 1.30643 1.34137 1.16858 0.86611 0.79116 0.85163 0.77210 1.20750 1.21215 1.19919 1.22282 0.97076 0.77035 1.04256 1.21037 0.91923 0.98070 0.95925 0.91517 0.91777 0.91514 0.85916 0.79512 0.92052 0.90759 0.92284 0.92335 0.93137 0.93180 0.92681 0.85949 0.93905 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.93 36.01 0.36 -0.48 16 2 C -0.13 -1.40 5.82 -105.23 -0.61 -2.01 16 3 C -0.04 -0.37 9.58 -39.46 -0.38 -0.75 16 4 C -0.21 -2.65 6.34 -105.21 -0.67 -3.32 16 5 C 0.08 0.73 12.08 -16.58 -0.20 0.53 16 6 N -0.43 -4.86 7.18 30.86 0.22 -4.64 16 7 H 0.44 3.20 8.96 -182.69 -1.64 1.57 16 8 N -0.27 -4.94 12.67 34.35 0.44 -4.51 16 9 C 0.13 2.25 7.49 -80.98 -0.61 1.65 16 10 C -0.09 -1.56 4.79 -102.74 -0.49 -2.05 16 11 C 0.55 12.48 7.21 -12.64 -0.09 12.39 16 12 O -0.52 -14.30 16.52 5.24 0.09 -14.21 16 13 N -0.60 -12.97 2.97 -173.86 -0.52 -13.48 16 14 C 0.11 1.78 5.59 -3.48 -0.02 1.76 16 15 C -0.13 -2.32 6.10 -26.38 -0.16 -2.48 16 16 C -0.11 -2.28 5.11 -26.69 -0.14 -2.42 16 17 C 0.04 1.03 2.25 -91.66 -0.21 0.83 16 18 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.52 -14.54 8.57 -34.44 -0.30 -14.84 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 22 N -0.88 -26.58 11.39 55.43 0.63 -25.95 16 23 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 27 C 0.11 2.88 5.41 -3.71 -0.02 2.86 16 28 C -0.05 -0.66 7.29 -39.20 -0.29 -0.94 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.39 8.04 -51.93 -0.42 -0.03 16 31 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 32 H 0.12 0.87 8.04 -52.49 -0.42 0.45 16 33 H 0.19 0.71 8.06 -52.48 -0.42 0.29 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.12 5.37 -51.93 -0.28 0.84 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.12 3.64 5.11 -51.93 -0.27 3.37 16 42 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.13 1.67 7.72 -52.49 -0.41 1.26 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -37.36 350.97 -9.97 -47.33 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.19 Total: 1.00 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.91 Total: -7.58 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.77 Total: -48.58 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.09 Total: -14.21 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.36 -9.97 -47.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.601 kcal (2) G-P(sol) polarization free energy of solvation -37.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds