Wall clock time and date at job start Fri Apr 10 2020 22:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35829 * 118.70197 * 2 1 4 4 C 1.40840 * 120.55527 * 180.25581 * 3 2 1 5 5 C 1.38427 * 134.90201 * 179.87181 * 4 3 2 6 6 N 1.33889 * 107.84756 * 179.70410 * 5 4 3 7 7 H 0.97001 * 125.01719 * 180.02562 * 6 5 4 8 8 N 1.39976 * 109.96020 * 0.02562 * 6 5 4 9 9 C 1.31472 * 109.01941 * 359.97438 * 8 6 5 10 10 C 1.46667 * 134.99069 * 180.02562 * 9 8 6 11 11 C 1.47168 * 120.72571 * 359.95427 * 10 9 8 12 12 O 1.21642 * 119.99684 * 53.78019 * 11 10 9 13 13 N 1.34776 * 120.00087 * 233.77895 * 11 10 9 14 14 C 1.46929 * 120.62773 * 5.54875 * 13 11 10 15 15 C 1.53629 * 108.53886 * 126.37007 * 14 13 11 16 16 C 1.53041 * 109.24102 * 54.85652 * 15 14 13 17 17 C 1.53033 * 109.53959 * 298.50965 * 16 15 14 18 18 H 1.09007 * 109.49685 * 301.41497 * 17 16 15 19 19 C 1.50697 * 109.52617 * 181.33504 * 17 16 15 20 20 H 1.07996 * 119.99983 * 0.14529 * 19 17 16 21 21 C 1.37878 * 120.00230 * 180.14343 * 19 17 16 22 22 N 1.31514 * 119.99641 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 120.00338 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46776 * 90.00193 * 23 21 19 25 25 H 1.48495 * 109.47555 * 210.00461 * 23 21 19 26 26 H 1.48496 * 109.47083 * 330.00673 * 23 21 19 27 27 C 1.46921 * 120.63153 * 185.83142 * 13 11 10 28 28 C 1.38587 * 118.54803 * 179.97438 * 10 9 8 29 29 H 1.08998 * 109.47306 * 270.20607 * 1 2 3 30 30 H 1.08999 * 109.47043 * 30.20341 * 1 2 3 31 31 H 1.08999 * 109.47119 * 150.20483 * 1 2 3 32 32 H 1.08000 * 119.72160 * 359.80516 * 3 2 1 33 33 H 1.08004 * 126.06977 * 359.68870 * 5 4 3 34 34 H 1.09002 * 109.58827 * 246.19717 * 14 13 11 35 35 H 1.09000 * 109.59080 * 6.62967 * 14 13 11 36 36 H 1.08996 * 109.63284 * 294.86492 * 15 14 13 37 37 H 1.09003 * 109.43302 * 174.72362 * 15 14 13 38 38 H 1.09002 * 109.45747 * 178.48594 * 16 15 14 39 39 H 1.09003 * 109.45763 * 58.53253 * 16 15 14 40 40 H 0.97008 * 119.99850 * 179.97438 * 22 21 19 41 41 H 1.08996 * 109.58577 * 353.37552 * 27 13 11 42 42 H 1.09000 * 109.58595 * 113.65767 * 27 13 11 43 43 H 1.08001 * 119.31820 * 180.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1593 1.1914 0.0000 4 6 3.5670 1.2369 -0.0054 5 6 4.5119 2.2485 -0.0091 6 7 5.7234 1.6785 -0.0072 7 1 6.5652 2.1603 -0.0086 8 7 5.5955 0.2846 -0.0027 9 6 4.3186 -0.0286 -0.0013 10 6 3.5586 -1.2830 0.0034 11 6 4.2509 -2.5816 0.0069 12 8 5.0871 -2.8227 0.8568 13 7 3.9585 -3.5037 -0.9315 14 6 3.0418 -3.1846 -2.0345 15 6 3.7445 -3.5063 -3.3623 16 6 4.2203 -4.9607 -3.3416 17 6 5.2269 -5.1539 -2.2052 18 1 6.0696 -4.4772 -2.3467 19 6 5.7198 -6.5780 -2.2057 20 1 5.3540 -7.2758 -2.9443 21 6 6.6379 -6.9901 -1.2632 22 7 7.0830 -6.1404 -0.3634 23 14 7.2484 -8.7555 -1.2632 24 1 8.4547 -8.8620 -2.1227 25 1 7.5913 -9.1608 0.1236 26 1 6.1845 -9.6471 -1.7908 27 6 4.5454 -4.8491 -0.8675 28 6 2.1742 -1.2185 0.0040 29 1 -0.3634 0.0037 1.0276 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3633 -0.8918 -0.5106 32 1 1.5938 2.1115 -0.0032 33 1 4.3080 3.3092 -0.0132 34 1 2.1364 -3.7845 -1.9425 35 1 2.7858 -2.1256 -2.0022 36 1 4.6012 -2.8451 -3.4928 37 1 3.0455 -3.3638 -4.1864 38 1 4.6957 -5.2007 -4.2927 39 1 3.3662 -5.6199 -3.1863 40 1 7.7287 -6.4304 0.3000 41 1 5.2818 -4.8887 -0.0649 42 1 3.7605 -5.5816 -0.6797 43 1 1.6022 -2.1346 0.0079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597914310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:18 Heat of formation + Delta-G solvation = 27.341662 kcal Electronic energy + Delta-G solvation = -26173.571903 eV Core-core repulsion = 22604.753515 eV Total energy + Delta-G solvation = -3568.818389 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.24901 -40.92005 -38.48482 -38.13537 -35.32517 -33.74431 -33.22602 -32.12864 -31.57316 -30.93161 -27.36214 -27.06291 -26.59101 -24.85598 -23.53715 -22.77486 -21.95964 -21.10730 -19.66204 -19.11216 -18.53766 -18.03723 -17.44126 -16.90031 -16.52161 -16.18455 -15.77869 -15.61312 -15.35050 -15.12827 -14.79044 -14.50684 -14.32764 -14.19725 -14.10084 -13.81101 -13.49778 -13.01089 -12.89336 -12.76559 -12.74237 -12.45921 -12.30595 -12.27810 -12.15399 -11.82415 -11.65180 -11.52866 -11.20969 -11.09885 -10.96632 -10.61395 -10.52572 -9.77007 -9.42158 -8.49199 -8.11111 -6.30610 -0.50668 0.83905 1.25470 1.38493 1.40066 1.51508 1.73298 1.92257 2.25234 2.41536 2.78395 3.15979 3.27383 3.54883 3.80851 4.03997 4.13320 4.16956 4.22063 4.29330 4.45982 4.47734 4.56454 4.61158 4.71390 4.76522 4.78261 4.84972 5.05371 5.07642 5.09303 5.23356 5.24018 5.26612 5.33534 5.38873 5.42214 5.53665 5.64957 5.70414 5.87058 5.97539 5.98497 6.29513 6.30538 6.60302 6.66705 6.83465 7.32182 7.40564 8.92178 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.003887 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.167347 B = 7201.461542 C = 7890.796796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.152 4.152 3 C 0.003 3.997 4 C -0.238 4.238 5 C 0.133 3.867 6 N -0.421 5.421 7 H 0.458 0.542 8 N -0.367 5.367 9 C 0.102 3.898 10 C -0.153 4.153 11 C 0.546 3.454 12 O -0.595 6.595 13 N -0.604 5.604 14 C 0.104 3.896 15 C -0.126 4.126 16 C -0.103 4.103 17 C 0.038 3.962 18 H -0.025 1.025 19 C -0.535 4.535 20 H 0.067 0.933 21 C 0.005 3.995 22 N -0.919 5.919 23 Si 0.963 3.037 24 H -0.275 1.275 25 H -0.288 1.288 26 H -0.257 1.257 27 C 0.125 3.875 28 C -0.012 4.012 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.174 0.826 33 H 0.258 0.742 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.036 0.964 37 H 0.108 0.892 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.258 0.742 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.721 22.190 -2.767 27.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.153 4.153 3 C -0.017 4.017 4 C -0.248 4.248 5 C -0.026 4.026 6 N -0.122 5.122 7 H 0.306 0.694 8 N -0.195 5.195 9 C -0.054 4.054 10 C -0.159 4.159 11 C 0.336 3.664 12 O -0.477 6.477 13 N -0.335 5.335 14 C -0.018 4.018 15 C -0.164 4.164 16 C -0.140 4.140 17 C 0.019 3.981 18 H -0.007 1.007 19 C -0.574 4.574 20 H 0.085 0.915 21 C -0.194 4.194 22 N -0.558 5.558 23 Si 0.788 3.212 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.180 1.180 27 C 0.003 3.997 28 C -0.034 4.034 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.192 0.808 33 H 0.273 0.727 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.055 0.945 37 H 0.126 0.874 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.918 21.559 -2.199 26.309 hybrid contribution 1.280 -0.959 0.482 1.670 sum -13.638 20.600 -1.718 24.765 Atomic orbital electron populations 1.20782 0.87941 1.04132 1.02971 1.19374 0.98108 0.91228 1.06615 1.20590 0.89818 0.99179 0.92120 1.20057 0.96278 0.90153 1.18265 1.23791 0.83074 1.00983 0.94737 1.46497 1.09960 1.04486 1.51235 0.69443 1.77695 1.18492 0.91301 1.31970 1.21838 0.90857 0.94671 0.98040 1.19688 0.93849 0.88133 1.14253 1.18846 0.81660 0.84743 0.81128 1.90761 1.35601 1.80495 1.40800 1.48466 1.46307 1.13094 1.25602 1.22165 0.92131 1.02413 0.85063 1.21984 1.00223 0.96382 0.97777 1.21505 0.98543 0.95986 0.97991 1.18895 0.92639 0.94904 0.91651 1.00720 1.21529 1.24598 0.96541 1.14708 0.91487 1.26006 0.96428 1.01893 0.95036 1.70159 1.31346 1.36510 1.17747 0.85479 0.78925 0.79754 0.77060 1.20110 1.21416 1.18041 1.21713 0.96042 0.79595 1.02330 1.21295 0.90114 1.00076 0.91930 0.90941 0.89288 0.91181 0.80841 0.72664 0.89045 0.88423 0.94535 0.87356 0.92898 0.91609 0.93277 0.91030 0.93733 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.93 71.24 0.71 -0.37 16 2 C -0.15 -2.81 5.82 -20.26 -0.12 -2.93 16 3 C 0.00 0.04 9.58 22.35 0.21 0.26 16 4 C -0.24 -5.30 6.34 -20.24 -0.13 -5.43 16 5 C 0.13 1.85 12.08 84.42 1.02 2.87 16 6 N -0.42 -9.04 7.18 -56.28 -0.40 -9.45 16 7 H 0.46 6.10 8.96 -213.40 -1.91 4.18 16 8 N -0.37 -14.03 12.67 -45.22 -0.57 -14.60 16 9 C 0.10 3.69 7.49 43.75 0.33 4.02 16 10 C -0.15 -5.81 4.79 -18.65 -0.09 -5.90 16 11 C 0.55 27.09 7.21 86.59 0.62 27.71 16 12 O -0.59 -36.68 16.52 -4.16 -0.07 -36.75 16 13 N -0.60 -27.89 2.97 -822.22 -2.44 -30.33 16 14 C 0.10 3.46 5.59 86.51 0.48 3.94 16 15 C -0.13 -4.28 6.10 30.82 0.19 -4.09 16 16 C -0.10 -4.28 5.11 30.62 0.16 -4.13 16 17 C 0.04 2.11 2.25 -11.47 -0.03 2.08 16 18 H -0.03 -1.64 8.14 -2.38 -0.02 -1.66 16 19 C -0.54 -31.18 8.57 25.60 0.22 -30.96 16 20 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 21 C 0.01 0.32 5.30 84.65 0.45 0.77 16 22 N -0.92 -60.08 11.39 21.45 0.24 -59.84 16 23 Si 0.96 46.39 29.54 68.60 2.03 48.42 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 27 C 0.13 6.88 5.41 86.36 0.47 7.35 16 28 C -0.01 -0.32 7.29 22.52 0.16 -0.16 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.52 8.04 -2.39 -0.02 0.50 16 31 H 0.07 0.71 8.06 -2.39 -0.02 0.69 16 32 H 0.17 1.04 8.04 -2.91 -0.02 1.01 16 33 H 0.26 -0.17 8.06 -2.91 -0.02 -0.19 16 34 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.10 2.83 5.37 -2.39 -0.01 2.82 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.26 16.26 8.31 -92.70 -0.77 15.49 16 41 H 0.07 4.71 5.11 -2.39 -0.01 4.70 16 42 H 0.04 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.14 3.37 7.72 -2.91 -0.02 3.34 16 Total: -1.00 -97.55 350.97 2.57 -94.98 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -0.87 Total: 12.54 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 4.66 Total: -4.97 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -3.17 Total: -114.22 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.07 Total: -36.75 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -97.55 2.57 -94.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.320 kcal (2) G-P(sol) polarization free energy of solvation -97.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds