Wall clock time and date at job start Fri Apr 10 2020 22:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35820 * 118.70122 * 2 1 4 4 C 1.40843 * 120.55683 * 180.02562 * 3 2 1 5 5 C 1.38421 * 134.90048 * 179.97438 * 4 3 2 6 6 N 1.33888 * 107.84771 * 180.02562 * 5 4 3 7 7 H 0.97000 * 125.02232 * 179.97438 * 6 5 4 8 8 N 1.39985 * 109.96063 * 0.02562 * 6 5 4 9 9 C 1.31476 * 109.01273 * 359.97438 * 8 6 5 10 10 C 1.46668 * 134.98840 * 179.97438 * 9 8 6 11 11 C 1.47171 * 120.72623 * 359.97438 * 10 9 8 12 12 O 1.21650 * 119.99628 * 307.11363 * 11 10 9 13 13 N 1.34776 * 120.00331 * 127.38232 * 11 10 9 14 14 C 1.46929 * 120.62752 * 3.52440 * 13 11 10 15 15 C 1.53182 * 108.77580 * 233.58084 * 14 13 11 16 16 C 1.53041 * 109.31457 * 305.36866 * 15 14 13 17 17 C 1.53032 * 109.54132 * 61.36285 * 16 15 14 18 18 H 1.08998 * 109.50113 * 58.61833 * 17 16 15 19 19 C 1.50702 * 109.50237 * 178.68631 * 17 16 15 20 20 H 1.07996 * 119.99417 * 5.79938 * 19 17 16 21 21 C 1.37873 * 120.00354 * 185.79619 * 19 17 16 22 22 N 1.31522 * 119.99811 * 356.08618 * 21 19 17 23 23 Si 1.86796 * 120.00204 * 176.07994 * 21 19 17 24 24 H 1.48499 * 109.46882 * 94.99622 * 23 21 19 25 25 H 1.48496 * 109.47208 * 214.99493 * 23 21 19 26 26 H 1.48495 * 109.47041 * 334.99896 * 23 21 19 27 27 C 1.46922 * 120.63150 * 183.23785 * 13 11 10 28 28 C 1.38593 * 118.54891 * 180.25438 * 10 9 8 29 29 H 1.08998 * 109.47081 * 90.00081 * 1 2 3 30 30 H 1.09004 * 109.47279 * 210.00246 * 1 2 3 31 31 H 1.09004 * 109.46977 * 329.99795 * 1 2 3 32 32 H 1.08001 * 119.72435 * 359.97268 * 3 2 1 33 33 H 1.08003 * 126.07805 * 359.97438 * 5 4 3 34 34 H 1.09006 * 109.58696 * 353.37091 * 14 13 11 35 35 H 1.09005 * 109.58826 * 113.64666 * 14 13 11 36 36 H 1.09007 * 109.49846 * 65.31834 * 15 14 13 37 37 H 1.09005 * 109.50229 * 185.41262 * 15 14 13 38 38 H 1.08999 * 109.46150 * 181.38914 * 16 15 14 39 39 H 1.09009 * 109.45702 * 301.35493 * 16 15 14 40 40 H 0.96996 * 119.99774 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.58723 * 246.20161 * 27 13 11 42 42 H 1.08998 * 109.58633 * 6.63163 * 27 13 11 43 43 H 1.07999 * 119.31498 * 179.72623 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1593 1.1913 0.0000 4 6 3.5670 1.2369 -0.0005 5 6 4.5118 2.2485 -0.0011 6 7 5.7233 1.6785 -0.0020 7 1 6.5652 2.1603 -0.0029 8 7 5.5955 0.2845 -0.0026 9 6 4.3186 -0.0286 -0.0016 10 6 3.5585 -1.2829 -0.0020 11 6 4.2509 -2.5816 -0.0045 12 8 5.0967 -2.8183 -0.8462 13 7 3.9439 -3.5108 0.9223 14 6 2.8675 -3.2723 1.8934 15 6 3.4212 -3.4857 3.3056 16 6 4.0532 -4.8766 3.3967 17 6 5.2124 -4.9782 2.4028 18 1 5.9505 -4.2074 2.6247 19 6 5.8545 -6.3368 2.5159 20 1 5.4180 -7.0886 3.1567 21 6 6.9992 -6.6201 1.8015 22 7 7.4874 -5.7324 0.9628 23 14 7.8566 -8.2646 2.0247 24 1 7.3941 -9.2101 0.9772 25 1 9.3251 -8.0769 1.9086 26 1 7.5322 -8.8140 3.3655 27 6 4.6752 -4.7840 0.9767 28 6 2.1741 -1.2185 -0.0058 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.5938 2.1115 -0.0004 33 1 4.3080 3.3092 -0.0017 34 1 2.5054 -2.2490 1.7937 35 1 2.0492 -3.9688 1.7103 36 1 4.1759 -2.7286 3.5188 37 1 2.6108 -3.4062 4.0302 38 1 4.4261 -5.0406 4.4076 39 1 3.3041 -5.6321 3.1590 40 1 8.2925 -5.9318 0.4599 41 1 4.0025 -5.6029 0.7221 42 1 5.5063 -4.7584 0.2719 43 1 1.6022 -2.1346 -0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597914312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:21 Heat of formation + Delta-G solvation = 55.358017 kcal Electronic energy + Delta-G solvation = -26192.292518 eV Core-core repulsion = 22624.689009 eV Total energy + Delta-G solvation = -3567.603508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.26058 -39.35244 -37.38335 -36.47151 -33.36993 -32.44778 -31.69464 -31.12763 -30.23504 -29.45173 -26.54832 -25.24492 -24.98614 -23.60239 -21.86145 -21.40444 -21.08099 -19.46301 -18.39407 -17.91416 -17.12115 -16.42330 -15.88868 -15.34052 -15.01785 -14.69543 -14.62091 -14.47661 -13.84888 -13.68596 -13.50182 -13.33795 -13.14823 -12.69538 -12.50266 -12.27116 -12.10442 -11.82508 -11.75485 -11.61147 -11.34218 -10.95466 -10.77309 -10.49480 -10.44028 -10.32084 -10.18842 -10.17090 -9.79327 -9.19787 -9.01966 -8.83251 -8.68315 -8.39608 -7.66776 -7.48702 -5.92973 -4.01407 0.43785 1.77293 2.30889 2.62918 3.31424 3.35633 3.42517 3.45288 3.66090 3.97643 4.20384 4.47358 4.50609 4.84250 4.89410 5.09977 5.25290 5.30725 5.37409 5.42287 5.47743 5.52448 5.55392 5.61979 5.78939 5.86769 5.98276 6.08931 6.26168 6.27431 6.36623 6.40117 6.56081 6.69061 6.75794 6.79617 6.93477 7.00501 7.05292 7.23997 7.37622 7.60221 7.71788 7.93777 8.06864 8.33972 8.45925 8.97388 9.04837 9.63985 11.13117 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.003979 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.037839 B = 7034.969762 C = 7892.596129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.034 4.034 4 C -0.209 4.209 5 C 0.079 3.921 6 N -0.429 5.429 7 H 0.444 0.556 8 N -0.273 5.273 9 C 0.129 3.871 10 C -0.086 4.086 11 C 0.552 3.448 12 O -0.525 6.525 13 N -0.599 5.599 14 C 0.100 3.900 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.040 3.960 18 H 0.032 0.968 19 C -0.522 4.522 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.878 5.878 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.117 3.883 28 C -0.049 4.049 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.188 0.812 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.263 0.737 41 H 0.043 0.957 42 H 0.116 0.884 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.750 18.113 -0.234 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.128 4.128 3 C -0.054 4.054 4 C -0.219 4.219 5 C -0.078 4.078 6 N -0.130 5.130 7 H 0.288 0.712 8 N -0.099 5.099 9 C -0.029 4.029 10 C -0.092 4.092 11 C 0.339 3.661 12 O -0.401 6.401 13 N -0.331 5.331 14 C -0.024 4.024 15 C -0.171 4.171 16 C -0.148 4.148 17 C 0.021 3.979 18 H 0.050 0.950 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.004 4.004 28 C -0.072 4.072 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.205 0.795 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.134 0.866 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.877 17.503 -0.815 21.168 hybrid contribution 0.232 -0.186 0.132 0.325 sum -11.646 17.316 -0.683 20.879 Atomic orbital electron populations 1.20768 0.90922 1.02670 1.02123 1.19035 0.96161 0.92304 1.05345 1.19984 0.90733 0.97460 0.97272 1.19521 0.94789 0.91487 1.16102 1.22663 0.85216 0.98863 1.01030 1.46484 1.08082 1.06095 1.52296 0.71204 1.77825 1.17018 0.87749 1.27292 1.21553 0.90103 0.93100 0.98119 1.20055 0.92347 0.90405 1.06422 1.17945 0.82775 0.83175 0.82216 1.90828 1.32627 1.79296 1.37379 1.48435 1.35483 1.18722 1.30473 1.21883 0.89875 1.01145 0.89450 1.21937 0.99965 0.99873 0.95359 1.21630 0.98919 0.93755 1.00475 1.19054 0.92002 0.97478 0.89358 0.95029 1.21071 1.09630 0.98209 1.27113 0.92395 1.25064 0.97128 0.96819 0.94980 1.69946 1.22161 1.34239 1.25173 0.86602 0.78945 0.84202 0.78396 1.20733 1.21225 1.19895 1.22372 0.95538 0.79466 1.02975 1.21054 0.91962 0.98085 0.96064 0.91520 0.91523 0.91766 0.85906 0.79509 0.90333 0.91979 0.92281 0.92292 0.93062 0.93231 0.92719 0.93823 0.86643 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.92 36.01 0.36 -0.46 16 2 C -0.13 -1.41 5.82 -105.23 -0.61 -2.02 16 3 C -0.03 -0.36 9.58 -39.46 -0.38 -0.74 16 4 C -0.21 -2.68 6.34 -105.21 -0.67 -3.35 16 5 C 0.08 0.74 12.08 -16.59 -0.20 0.54 16 6 N -0.43 -4.96 7.18 30.86 0.22 -4.74 16 7 H 0.44 3.31 8.96 -182.68 -1.64 1.68 16 8 N -0.27 -5.00 12.67 34.35 0.44 -4.56 16 9 C 0.13 2.29 7.49 -80.98 -0.61 1.69 16 10 C -0.09 -1.57 5.08 -102.74 -0.52 -2.09 16 11 C 0.55 12.50 7.25 -12.63 -0.09 12.41 16 12 O -0.52 -14.31 16.52 5.23 0.09 -14.22 16 13 N -0.60 -12.92 2.97 -173.86 -0.52 -13.44 16 14 C 0.10 1.67 5.47 -3.71 -0.02 1.65 16 15 C -0.13 -2.30 6.08 -26.62 -0.16 -2.46 16 16 C -0.11 -2.28 5.11 -26.69 -0.14 -2.41 16 17 C 0.04 1.04 2.19 -91.43 -0.20 0.84 16 18 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 19 C -0.52 -14.53 8.49 -34.44 -0.29 -14.83 16 20 H 0.06 1.57 7.75 -52.49 -0.41 1.16 16 21 C 0.06 1.81 5.36 -17.82 -0.10 1.71 16 22 N -0.88 -26.62 11.70 55.43 0.65 -25.97 16 23 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.12 2.95 5.49 -3.48 -0.02 2.93 16 28 C -0.05 -0.68 6.95 -39.20 -0.27 -0.95 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 31 H 0.06 0.39 8.04 -51.93 -0.42 -0.03 16 32 H 0.12 0.87 8.04 -52.49 -0.42 0.45 16 33 H 0.19 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.08 1.15 4.71 -51.93 -0.24 0.90 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.12 3.43 5.46 -51.93 -0.28 3.15 16 43 H 0.13 1.64 7.26 -52.49 -0.38 1.26 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -37.48 350.37 -9.93 -47.41 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.15 Total: 1.03 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.92 Total: -7.55 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.79 Total: -48.71 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.09 Total: -14.22 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.48 -9.93 -47.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.772 kcal (2) G-P(sol) polarization free energy of solvation -37.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds