Wall clock time and date at job start Fri Apr 10 2020 22:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35820 * 118.70122 * 2 1 4 4 C 1.40843 * 120.55683 * 180.02562 * 3 2 1 5 5 C 1.38421 * 134.90048 * 179.97438 * 4 3 2 6 6 N 1.33888 * 107.84771 * 180.02562 * 5 4 3 7 7 H 0.97000 * 125.02232 * 179.97438 * 6 5 4 8 8 N 1.39985 * 109.96063 * 0.02562 * 6 5 4 9 9 C 1.31476 * 109.01273 * 359.97438 * 8 6 5 10 10 C 1.46668 * 134.98840 * 179.97438 * 9 8 6 11 11 C 1.47171 * 120.72623 * 359.97438 * 10 9 8 12 12 O 1.21650 * 119.99628 * 307.11363 * 11 10 9 13 13 N 1.34776 * 120.00331 * 127.38232 * 11 10 9 14 14 C 1.46929 * 120.62752 * 3.52440 * 13 11 10 15 15 C 1.53182 * 108.77580 * 233.58084 * 14 13 11 16 16 C 1.53041 * 109.31457 * 305.36866 * 15 14 13 17 17 C 1.53032 * 109.54132 * 61.36285 * 16 15 14 18 18 H 1.08998 * 109.50113 * 58.61833 * 17 16 15 19 19 C 1.50702 * 109.50237 * 178.68631 * 17 16 15 20 20 H 1.07996 * 119.99417 * 5.79938 * 19 17 16 21 21 C 1.37873 * 120.00354 * 185.79619 * 19 17 16 22 22 N 1.31522 * 119.99811 * 356.08618 * 21 19 17 23 23 Si 1.86796 * 120.00204 * 176.07994 * 21 19 17 24 24 H 1.48499 * 109.46882 * 94.99622 * 23 21 19 25 25 H 1.48496 * 109.47208 * 214.99493 * 23 21 19 26 26 H 1.48495 * 109.47041 * 334.99896 * 23 21 19 27 27 C 1.46922 * 120.63150 * 183.23785 * 13 11 10 28 28 C 1.38593 * 118.54891 * 180.25438 * 10 9 8 29 29 H 1.08998 * 109.47081 * 90.00081 * 1 2 3 30 30 H 1.09004 * 109.47279 * 210.00246 * 1 2 3 31 31 H 1.09004 * 109.46977 * 329.99795 * 1 2 3 32 32 H 1.08001 * 119.72435 * 359.97268 * 3 2 1 33 33 H 1.08003 * 126.07805 * 359.97438 * 5 4 3 34 34 H 1.09006 * 109.58696 * 353.37091 * 14 13 11 35 35 H 1.09005 * 109.58826 * 113.64666 * 14 13 11 36 36 H 1.09007 * 109.49846 * 65.31834 * 15 14 13 37 37 H 1.09005 * 109.50229 * 185.41262 * 15 14 13 38 38 H 1.08999 * 109.46150 * 181.38914 * 16 15 14 39 39 H 1.09009 * 109.45702 * 301.35493 * 16 15 14 40 40 H 0.96996 * 119.99774 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.58723 * 246.20161 * 27 13 11 42 42 H 1.08998 * 109.58633 * 6.63163 * 27 13 11 43 43 H 1.07999 * 119.31498 * 179.72623 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1593 1.1913 0.0000 4 6 3.5670 1.2369 -0.0005 5 6 4.5118 2.2485 -0.0011 6 7 5.7233 1.6785 -0.0020 7 1 6.5652 2.1603 -0.0029 8 7 5.5955 0.2845 -0.0026 9 6 4.3186 -0.0286 -0.0016 10 6 3.5585 -1.2829 -0.0020 11 6 4.2509 -2.5816 -0.0045 12 8 5.0967 -2.8183 -0.8462 13 7 3.9439 -3.5108 0.9223 14 6 2.8675 -3.2723 1.8934 15 6 3.4212 -3.4857 3.3056 16 6 4.0532 -4.8766 3.3967 17 6 5.2124 -4.9782 2.4028 18 1 5.9505 -4.2074 2.6247 19 6 5.8545 -6.3368 2.5159 20 1 5.4180 -7.0886 3.1567 21 6 6.9992 -6.6201 1.8015 22 7 7.4874 -5.7324 0.9628 23 14 7.8566 -8.2646 2.0247 24 1 7.3941 -9.2101 0.9772 25 1 9.3251 -8.0769 1.9086 26 1 7.5322 -8.8140 3.3655 27 6 4.6752 -4.7840 0.9767 28 6 2.1741 -1.2185 -0.0058 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.5938 2.1115 -0.0004 33 1 4.3080 3.3092 -0.0017 34 1 2.5054 -2.2490 1.7937 35 1 2.0492 -3.9688 1.7103 36 1 4.1759 -2.7286 3.5188 37 1 2.6108 -3.4062 4.0302 38 1 4.4261 -5.0406 4.4076 39 1 3.3041 -5.6321 3.1590 40 1 8.2925 -5.9318 0.4599 41 1 4.0025 -5.6029 0.7221 42 1 5.5063 -4.7584 0.2719 43 1 1.6022 -2.1346 -0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597914312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:21 Heat of formation + Delta-G solvation = 28.187112 kcal Electronic energy + Delta-G solvation = -26193.470736 eV Core-core repulsion = 22624.689009 eV Total energy + Delta-G solvation = -3568.781727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.25772 -40.94512 -38.46896 -38.16724 -35.32008 -33.74299 -33.22851 -32.18191 -31.59475 -30.91612 -27.35427 -27.04783 -26.65475 -24.83868 -23.55531 -22.79126 -21.95577 -21.08393 -19.66783 -19.14982 -18.54499 -18.09985 -17.38551 -16.88641 -16.55350 -16.19564 -15.76787 -15.66427 -15.33605 -15.12839 -14.83954 -14.49611 -14.32600 -14.19808 -14.11744 -13.76424 -13.48770 -13.03166 -12.91338 -12.76209 -12.73932 -12.46922 -12.33782 -12.29672 -12.14122 -11.79331 -11.64214 -11.52650 -11.21249 -11.07807 -10.95908 -10.66288 -10.52166 -9.75252 -9.43556 -8.49411 -8.13367 -6.31246 -0.51220 0.83375 1.25188 1.38080 1.39035 1.51161 1.72309 1.91841 2.24891 2.40972 2.78244 3.15507 3.26916 3.54875 3.79547 4.03668 4.13415 4.17011 4.22005 4.30042 4.46156 4.47240 4.55845 4.60350 4.72367 4.76886 4.77535 4.84857 5.05354 5.08581 5.09428 5.21911 5.24346 5.25496 5.32668 5.39099 5.42342 5.53539 5.62926 5.70116 5.85425 5.94480 5.97732 6.29195 6.29761 6.59773 6.65640 6.83537 7.30889 7.39813 8.91550 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.003979 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.037839 B = 7034.969762 C = 7892.596129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.152 4.152 3 C 0.003 3.997 4 C -0.238 4.238 5 C 0.132 3.868 6 N -0.422 5.422 7 H 0.458 0.542 8 N -0.368 5.368 9 C 0.102 3.898 10 C -0.154 4.154 11 C 0.546 3.454 12 O -0.597 6.597 13 N -0.603 5.603 14 C 0.097 3.903 15 C -0.125 4.125 16 C -0.103 4.103 17 C 0.039 3.961 18 H -0.021 1.021 19 C -0.535 4.535 20 H 0.067 0.933 21 C 0.005 3.995 22 N -0.920 5.920 23 Si 0.963 3.037 24 H -0.275 1.275 25 H -0.288 1.288 26 H -0.257 1.257 27 C 0.129 3.871 28 C -0.013 4.013 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.174 0.826 33 H 0.258 0.742 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.037 0.963 37 H 0.109 0.891 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.258 0.742 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.887 21.068 1.234 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.153 4.153 3 C -0.017 4.017 4 C -0.248 4.248 5 C -0.026 4.026 6 N -0.122 5.122 7 H 0.305 0.695 8 N -0.195 5.195 9 C -0.054 4.054 10 C -0.161 4.161 11 C 0.336 3.664 12 O -0.479 6.479 13 N -0.334 5.334 14 C -0.024 4.024 15 C -0.163 4.163 16 C -0.141 4.141 17 C 0.020 3.980 18 H -0.003 1.003 19 C -0.573 4.573 20 H 0.085 0.915 21 C -0.194 4.194 22 N -0.559 5.559 23 Si 0.788 3.212 24 H -0.200 1.200 25 H -0.214 1.214 26 H -0.181 1.181 27 C 0.007 3.993 28 C -0.036 4.036 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.192 0.808 33 H 0.274 0.726 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.056 0.944 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.051 20.456 0.703 26.011 hybrid contribution 1.477 -0.852 -0.333 1.737 sum -14.574 19.604 0.371 24.431 Atomic orbital electron populations 1.20789 0.87819 1.04197 1.03028 1.19387 0.98171 0.91208 1.06573 1.20598 0.89762 0.99252 0.92115 1.20062 0.96320 0.90101 1.18271 1.23797 0.83072 1.01001 0.94762 1.46504 1.09972 1.04497 1.51253 0.69473 1.77715 1.18562 0.91290 1.31946 1.21846 0.90854 0.94716 0.98029 1.19703 0.93933 0.88152 1.14284 1.18828 0.81923 0.84727 0.80906 1.90748 1.36118 1.80799 1.40201 1.48469 1.36144 1.17344 1.31428 1.22237 0.88895 1.03547 0.87735 1.21906 1.00750 0.96722 0.96960 1.21515 0.97268 0.96642 0.98669 1.18977 0.92906 0.94991 0.91111 1.00298 1.21537 1.09914 0.99216 1.26649 0.91452 1.26013 0.98141 1.00719 0.94529 1.70183 1.22473 1.36759 1.26494 0.85470 0.77301 0.79398 0.79073 1.20027 1.21405 1.18116 1.21793 0.94416 0.81724 1.01395 1.21339 0.90078 1.00211 0.91931 0.90859 0.91026 0.89345 0.80824 0.72645 0.87774 0.89030 0.94425 0.87243 0.92846 0.91685 0.93296 0.93671 0.91979 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.92 71.24 0.71 -0.32 16 2 C -0.15 -2.78 5.82 -20.26 -0.12 -2.90 16 3 C 0.00 0.04 9.58 22.35 0.21 0.25 16 4 C -0.24 -5.40 6.34 -20.25 -0.13 -5.53 16 5 C 0.13 1.92 12.08 84.42 1.02 2.94 16 6 N -0.42 -9.37 7.18 -56.29 -0.40 -9.78 16 7 H 0.46 6.46 8.96 -213.39 -1.91 4.54 16 8 N -0.37 -14.38 12.67 -45.23 -0.57 -14.95 16 9 C 0.10 3.74 7.49 43.75 0.33 4.07 16 10 C -0.15 -5.90 5.08 -18.64 -0.09 -5.99 16 11 C 0.55 27.08 7.25 86.59 0.63 27.71 16 12 O -0.60 -36.64 16.52 -4.19 -0.07 -36.71 16 13 N -0.60 -27.80 2.97 -822.20 -2.44 -30.24 16 14 C 0.10 3.18 5.47 86.36 0.47 3.65 16 15 C -0.13 -4.19 6.08 30.67 0.19 -4.01 16 16 C -0.10 -4.28 5.11 30.62 0.16 -4.12 16 17 C 0.04 2.16 2.19 -11.32 -0.02 2.14 16 18 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 19 C -0.53 -31.11 8.49 25.60 0.22 -30.89 16 20 H 0.07 3.70 7.75 -2.91 -0.02 3.68 16 21 C 0.00 0.30 5.36 84.65 0.45 0.75 16 22 N -0.92 -60.36 11.70 21.45 0.25 -60.11 16 23 Si 0.96 46.49 29.54 68.60 2.03 48.51 16 24 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 27 C 0.13 7.08 5.49 86.51 0.48 7.56 16 28 C -0.01 -0.36 6.95 22.52 0.16 -0.20 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.67 8.06 -2.38 -0.02 0.65 16 31 H 0.09 0.50 8.04 -2.38 -0.02 0.48 16 32 H 0.17 1.05 8.04 -2.91 -0.02 1.03 16 33 H 0.26 -0.05 8.06 -2.91 -0.02 -0.07 16 34 H 0.10 2.90 4.71 -2.38 -0.01 2.89 16 35 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 38 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 40 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 41 H 0.04 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.06 4.10 5.46 -2.39 -0.01 4.09 16 43 H 0.14 3.32 7.26 -2.91 -0.02 3.30 16 Total: -1.00 -98.23 350.37 2.57 -95.66 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -0.87 Total: 12.52 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 4.65 Total: -4.91 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -3.16 Total: -115.07 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.07 Total: -36.71 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -98.23 2.57 -95.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.844 kcal (2) G-P(sol) polarization free energy of solvation -98.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds