Wall clock time and date at job start Fri Apr 10 2020 22:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47055 * 270.00338 * 3 2 1 5 5 H 1.48499 * 109.47059 * 30.00250 * 3 2 1 6 6 H 1.48504 * 109.46772 * 150.00165 * 3 2 1 7 7 C 1.37874 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00078 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99932 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.52336 * 60.07657 * 9 7 2 11 11 C 1.53042 * 109.50068 * 180.16086 * 9 7 2 12 12 C 1.53038 * 109.54112 * 181.31491 * 11 9 7 13 13 C 1.53621 * 109.24282 * 298.51261 * 12 11 9 14 14 N 1.46930 * 108.54315 * 54.85554 * 13 12 11 15 15 C 1.34778 * 120.63023 * 126.37004 * 14 13 12 16 16 O 1.21282 * 119.99981 * 179.71905 * 15 14 13 17 17 C 1.50694 * 120.00098 * 359.71613 * 15 14 13 18 18 C 1.50697 * 109.46956 * 179.97438 * 17 15 14 19 19 C 1.35105 * 125.68429 * 125.02891 * 18 17 15 20 20 N 1.36834 * 107.18052 * 179.97438 * 19 18 17 21 21 C 1.36488 * 132.56910 * 179.97438 * 20 19 18 22 22 C 1.34954 * 120.61172 * 180.02562 * 21 20 19 23 23 C 1.40476 * 120.29750 * 359.96749 * 22 21 20 24 24 C 1.36022 * 119.69282 * 0.28602 * 23 22 21 25 25 C 1.37075 * 107.00259 * 359.97438 * 20 19 18 26 26 N 1.32564 * 108.03046 * 359.97438 * 25 20 19 27 27 C 1.46928 * 118.73640 * 306.08898 * 14 13 12 28 28 H 0.97005 * 120.00386 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.45713 * 301.33866 * 11 9 7 30 30 H 1.09001 * 109.45865 * 61.30573 * 11 9 7 31 31 H 1.08999 * 109.49383 * 58.58473 * 12 11 9 32 32 H 1.08996 * 109.50143 * 178.64958 * 12 11 9 33 33 H 1.08997 * 109.74133 * 295.11485 * 13 12 11 34 34 H 1.09000 * 109.66617 * 174.54760 * 13 12 11 35 35 H 1.09007 * 109.46918 * 60.00177 * 17 15 14 36 36 H 1.08994 * 109.47355 * 300.00147 * 17 15 14 37 37 H 1.08001 * 126.41125 * 0.02562 * 19 18 17 38 38 H 1.08003 * 119.69242 * 0.03986 * 21 20 19 39 39 H 1.07993 * 119.84736 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.14792 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.33865 * 179.68304 * 24 23 22 42 42 H 1.09002 * 109.58348 * 173.64618 * 27 14 13 43 43 H 1.08990 * 109.59013 * 294.07608 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8761 -0.6818 0.8893 11 6 4.0224 -2.6367 -0.0057 12 6 5.5524 -2.6380 0.0268 13 6 6.0861 -1.9325 -1.2291 14 7 5.4856 -0.5936 -1.3037 15 6 6.2621 0.5015 -1.4232 16 8 5.7541 1.6008 -1.4890 17 6 7.7615 0.3600 -1.4751 18 6 8.3902 1.7229 -1.6103 19 6 9.3285 2.2429 -0.7890 20 7 9.6291 3.4925 -1.2587 21 6 10.4941 4.4570 -0.8292 22 6 10.5995 5.6291 -1.4897 23 6 9.8184 5.8717 -2.6317 24 6 8.9486 4.9211 -3.0676 25 6 8.8537 3.7003 -2.3698 26 7 8.1144 2.6170 -2.5627 27 6 4.0223 -0.4718 -1.2519 28 1 -0.4851 0.8401 0.0004 29 1 3.6400 -3.1600 0.8707 30 1 3.6781 -3.1410 -0.9086 31 1 5.8978 -2.1122 0.9169 32 1 5.9150 -3.6657 0.0477 33 1 5.8146 -2.5047 -2.1162 34 1 7.1707 -1.8436 -1.1670 35 1 8.0390 -0.2543 -2.3318 36 1 8.1137 -0.1137 -0.5589 37 1 9.7611 1.7620 0.0758 38 1 11.0999 4.2804 0.0473 39 1 11.2882 6.3835 -1.1392 40 1 9.9050 6.8104 -3.1587 41 1 8.3392 5.0987 -3.9415 42 1 3.7448 0.5812 -1.2046 43 1 3.5860 -0.9273 -2.1407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597916425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:23 Heat of formation + Delta-G solvation = 60.760584 kcal Electronic energy + Delta-G solvation = -25739.594862 eV Core-core repulsion = 22172.225627 eV Total energy + Delta-G solvation = -3567.369235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.87904 -39.63818 -37.67391 -36.71748 -33.76536 -33.43203 -32.09467 -31.70498 -30.44521 -29.36431 -27.93204 -25.13291 -24.63269 -23.36569 -22.81355 -21.97090 -21.08550 -19.54212 -18.44299 -17.82619 -17.12154 -16.79574 -16.61186 -15.96792 -15.87950 -15.11575 -15.05195 -14.66244 -14.28387 -14.18619 -13.87076 -13.52404 -13.01023 -12.96625 -12.82059 -12.68101 -12.43700 -12.21041 -11.95624 -11.91398 -11.59118 -11.25422 -11.15395 -11.00946 -10.57003 -10.33084 -10.04616 -10.02237 -9.71924 -9.43444 -9.13509 -9.04538 -8.75337 -8.54070 -7.96710 -7.94167 -6.06191 -4.07478 0.57366 1.13114 2.45313 2.71679 3.14301 3.38775 3.44022 3.50983 3.64052 3.64481 4.04858 4.21911 4.47651 4.50111 4.60626 4.84960 4.90601 5.02890 5.12699 5.20589 5.26696 5.28507 5.37576 5.42571 5.55811 5.59123 5.66932 5.84451 5.86651 5.96325 6.04417 6.14816 6.25080 6.30732 6.44081 6.51205 6.60968 6.70811 6.81838 6.95734 6.97691 7.20561 7.49419 7.77379 7.88970 7.98925 8.51528 8.74531 8.96929 9.56037 11.05755 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.003700 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.752217 B = 7566.386699 C = 8658.910926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.077 0.923 9 C 0.005 3.995 10 H 0.029 0.971 11 C -0.101 4.101 12 C -0.136 4.136 13 C 0.109 3.891 14 N -0.612 5.612 15 C 0.509 3.491 16 O -0.526 6.526 17 C -0.060 4.060 18 C 0.084 3.916 19 C -0.096 4.096 20 N -0.364 5.364 21 C 0.055 3.945 22 C -0.147 4.147 23 C -0.111 4.111 24 C -0.072 4.072 25 C 0.218 3.782 26 N -0.458 5.458 27 C 0.105 3.895 28 H 0.265 0.735 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.183 0.817 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.078 0.922 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.007 4.790 -2.475 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.711 3.289 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.095 0.905 9 C -0.015 4.015 10 H 0.047 0.953 11 C -0.138 4.138 12 C -0.175 4.175 13 C -0.014 4.014 14 N -0.346 5.346 15 C 0.295 3.705 16 O -0.401 6.401 17 C -0.101 4.101 18 C -0.049 4.049 19 C -0.227 4.227 20 N -0.036 5.036 21 C -0.067 4.067 22 C -0.168 4.168 23 C -0.135 4.135 24 C -0.092 4.092 25 C -0.025 4.025 26 N -0.177 5.177 27 C -0.016 4.016 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.200 0.800 38 H 0.178 0.822 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.168 0.832 42 H 0.096 0.904 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 25.000 5.326 -3.096 25.748 hybrid contribution 0.940 1.027 0.745 1.579 sum 25.940 6.353 -2.350 26.810 Atomic orbital electron populations 1.69895 1.06264 1.27104 1.50216 1.25031 0.94738 0.99076 0.94064 0.86978 0.79516 0.83377 0.79079 1.19889 1.22469 1.18952 1.20964 0.88297 0.94564 1.51567 0.90483 1.19486 0.96759 0.92197 0.93056 0.95275 1.21436 0.92083 0.98831 1.01476 1.22062 0.98586 0.99433 0.97375 1.21785 0.97108 0.83705 0.98819 1.48408 1.08254 1.05646 1.72322 1.20244 0.88390 0.84564 0.77258 1.90733 1.75016 1.25560 1.48797 1.20063 0.93144 0.92320 1.04568 1.20155 0.95612 0.96119 0.93053 1.22312 1.08150 0.86326 1.05887 1.42804 1.27159 1.12232 1.21397 1.21581 0.95083 0.89000 1.01055 1.20768 1.02348 0.96500 0.97140 1.20990 0.96059 0.99669 0.96750 1.20318 0.99464 0.89198 1.00189 1.21037 0.94324 0.97489 0.89655 1.70683 1.21693 0.99661 1.25683 1.22534 0.75867 1.02366 1.00834 0.92556 0.92304 0.92510 0.92036 0.91707 0.91490 0.90716 0.87478 0.87566 0.80027 0.82212 0.83409 0.84164 0.83245 0.90437 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 2 C 0.07 2.19 5.45 -17.82 -0.10 2.10 16 3 Si 0.88 24.32 24.32 -169.99 -4.13 20.18 16 4 H -0.27 -7.71 6.92 56.52 0.39 -7.32 16 5 H -0.30 -8.13 7.11 56.52 0.40 -7.72 16 6 H -0.26 -7.34 6.53 56.52 0.37 -6.97 16 7 C -0.52 -14.62 9.15 -34.44 -0.31 -14.93 16 8 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 9 C 0.00 0.11 1.84 -91.65 -0.17 -0.06 16 10 H 0.03 0.74 7.21 -51.93 -0.37 0.36 16 11 C -0.10 -1.90 5.10 -26.69 -0.14 -2.03 16 12 C -0.14 -1.96 6.10 -26.39 -0.16 -2.12 16 13 C 0.11 1.50 6.37 -3.49 -0.02 1.48 16 14 N -0.61 -11.66 2.97 -172.50 -0.51 -12.17 16 15 C 0.51 9.98 7.69 -10.99 -0.08 9.90 16 16 O -0.53 -13.03 14.97 5.56 0.08 -12.95 16 17 C -0.06 -0.83 4.61 -29.04 -0.13 -0.96 16 18 C 0.08 1.32 5.84 -82.98 -0.48 0.84 16 19 C -0.10 -1.21 11.63 -16.43 -0.19 -1.40 16 20 N -0.36 -4.61 2.94 -62.66 -0.18 -4.79 16 21 C 0.06 0.48 10.95 -16.65 -0.18 0.30 16 22 C -0.15 -1.06 9.99 -39.91 -0.40 -1.46 16 23 C -0.11 -0.92 10.07 -39.53 -0.40 -1.32 16 24 C -0.07 -0.83 10.11 -39.36 -0.40 -1.23 16 25 C 0.22 3.31 7.81 -156.04 -1.22 2.09 16 26 N -0.46 -8.30 10.67 -9.01 -0.10 -8.40 16 27 C 0.10 2.44 5.11 -3.71 -0.02 2.42 16 28 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.75 5.93 -51.93 -0.31 0.45 16 35 H 0.11 1.23 7.93 -51.92 -0.41 0.82 16 36 H 0.11 1.09 7.66 -51.93 -0.40 0.69 16 37 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16 42 H 0.08 2.06 2.32 -51.93 -0.12 1.94 16 43 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -39.16 344.68 -9.14 -48.31 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.86 Total: -1.63 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -4.41 Total: -6.40 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.02 Total: -52.70 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.13 Total: 20.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -39.16 -9.14 -48.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.067 kcal (2) G-P(sol) polarization free energy of solvation -39.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds