Wall clock time and date at job start Fri Apr 10 2020 22:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47055 * 270.00338 * 3 2 1 5 5 H 1.48499 * 109.47059 * 30.00250 * 3 2 1 6 6 H 1.48504 * 109.46772 * 150.00165 * 3 2 1 7 7 C 1.37874 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00078 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99932 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.52336 * 60.07657 * 9 7 2 11 11 C 1.53042 * 109.50068 * 180.16086 * 9 7 2 12 12 C 1.53038 * 109.54112 * 181.31491 * 11 9 7 13 13 C 1.53621 * 109.24282 * 298.51261 * 12 11 9 14 14 N 1.46930 * 108.54315 * 54.85554 * 13 12 11 15 15 C 1.34778 * 120.63023 * 126.37004 * 14 13 12 16 16 O 1.21282 * 119.99981 * 179.71905 * 15 14 13 17 17 C 1.50694 * 120.00098 * 359.71613 * 15 14 13 18 18 C 1.50697 * 109.46956 * 179.97438 * 17 15 14 19 19 C 1.35105 * 125.68429 * 125.02891 * 18 17 15 20 20 N 1.36834 * 107.18052 * 179.97438 * 19 18 17 21 21 C 1.36488 * 132.56910 * 179.97438 * 20 19 18 22 22 C 1.34954 * 120.61172 * 180.02562 * 21 20 19 23 23 C 1.40476 * 120.29750 * 359.96749 * 22 21 20 24 24 C 1.36022 * 119.69282 * 0.28602 * 23 22 21 25 25 C 1.37075 * 107.00259 * 359.97438 * 20 19 18 26 26 N 1.32564 * 108.03046 * 359.97438 * 25 20 19 27 27 C 1.46928 * 118.73640 * 306.08898 * 14 13 12 28 28 H 0.97005 * 120.00386 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.45713 * 301.33866 * 11 9 7 30 30 H 1.09001 * 109.45865 * 61.30573 * 11 9 7 31 31 H 1.08999 * 109.49383 * 58.58473 * 12 11 9 32 32 H 1.08996 * 109.50143 * 178.64958 * 12 11 9 33 33 H 1.08997 * 109.74133 * 295.11485 * 13 12 11 34 34 H 1.09000 * 109.66617 * 174.54760 * 13 12 11 35 35 H 1.09007 * 109.46918 * 60.00177 * 17 15 14 36 36 H 1.08994 * 109.47355 * 300.00147 * 17 15 14 37 37 H 1.08001 * 126.41125 * 0.02562 * 19 18 17 38 38 H 1.08003 * 119.69242 * 0.03986 * 21 20 19 39 39 H 1.07993 * 119.84736 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.14792 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.33865 * 179.68304 * 24 23 22 42 42 H 1.09002 * 109.58348 * 173.64618 * 27 14 13 43 43 H 1.08990 * 109.59013 * 294.07608 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8761 -0.6818 0.8893 11 6 4.0224 -2.6367 -0.0057 12 6 5.5524 -2.6380 0.0268 13 6 6.0861 -1.9325 -1.2291 14 7 5.4856 -0.5936 -1.3037 15 6 6.2621 0.5015 -1.4232 16 8 5.7541 1.6008 -1.4890 17 6 7.7615 0.3600 -1.4751 18 6 8.3902 1.7229 -1.6103 19 6 9.3285 2.2429 -0.7890 20 7 9.6291 3.4925 -1.2587 21 6 10.4941 4.4570 -0.8292 22 6 10.5995 5.6291 -1.4897 23 6 9.8184 5.8717 -2.6317 24 6 8.9486 4.9211 -3.0676 25 6 8.8537 3.7003 -2.3698 26 7 8.1144 2.6170 -2.5627 27 6 4.0223 -0.4718 -1.2519 28 1 -0.4851 0.8401 0.0004 29 1 3.6400 -3.1600 0.8707 30 1 3.6781 -3.1410 -0.9086 31 1 5.8978 -2.1122 0.9169 32 1 5.9150 -3.6657 0.0477 33 1 5.8146 -2.5047 -2.1162 34 1 7.1707 -1.8436 -1.1670 35 1 8.0390 -0.2543 -2.3318 36 1 8.1137 -0.1137 -0.5589 37 1 9.7611 1.7620 0.0758 38 1 11.0999 4.2804 0.0473 39 1 11.2882 6.3835 -1.1392 40 1 9.9050 6.8104 -3.1587 41 1 8.3392 5.0987 -3.9415 42 1 3.7448 0.5812 -1.2046 43 1 3.5860 -0.9273 -2.1407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597916425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:23 Heat of formation + Delta-G solvation = 33.635745 kcal Electronic energy + Delta-G solvation = -25740.771084 eV Core-core repulsion = 22172.225627 eV Total energy + Delta-G solvation = -3568.545457 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.74242 -41.10798 -38.70741 -38.06083 -35.35852 -34.59232 -33.75892 -32.88402 -32.05490 -30.22592 -28.94092 -26.96246 -26.11957 -24.19742 -23.64092 -23.51286 -22.23421 -21.08246 -19.78884 -18.95177 -18.68138 -18.31123 -17.66769 -17.04611 -16.77612 -16.52572 -16.33455 -16.10496 -15.49779 -15.37825 -15.09714 -15.00519 -14.75301 -14.55888 -14.11383 -13.90165 -13.67226 -13.37778 -13.18871 -13.05647 -12.88809 -12.61383 -12.47805 -12.34714 -12.12499 -11.99584 -11.76849 -11.58798 -11.24728 -11.05757 -11.00335 -10.84035 -10.67325 -9.66001 -9.51299 -8.79427 -8.43605 -6.43704 -0.14203 0.34273 1.16015 1.23563 1.36674 1.65221 1.71690 1.80709 2.14772 2.24564 2.61048 2.94598 3.21663 3.47394 3.68293 3.87599 3.95186 4.09293 4.17715 4.18533 4.19839 4.26531 4.33867 4.46573 4.48277 4.53947 4.57113 4.67172 4.79668 4.82892 4.92763 4.95848 5.01475 5.13393 5.20035 5.26321 5.27445 5.43609 5.54196 5.59351 5.62459 5.65360 5.72427 6.18514 6.24400 6.57344 6.65941 6.97253 7.21798 7.29654 8.72692 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.003700 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.752217 B = 7566.386699 C = 8658.910926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.032 3.968 3 Si 0.938 3.062 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.005 3.995 10 H 0.014 0.986 11 C -0.099 4.099 12 C -0.126 4.126 13 C 0.101 3.899 14 N -0.614 5.614 15 C 0.499 3.501 16 O -0.590 6.590 17 C -0.045 4.045 18 C 0.044 3.956 19 C -0.090 4.090 20 N -0.369 5.369 21 C 0.044 3.956 22 C -0.142 4.142 23 C -0.085 4.085 24 C -0.119 4.119 25 C 0.192 3.808 26 N -0.526 5.526 27 C 0.110 3.890 28 H 0.267 0.733 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.224 0.776 38 H 0.200 0.800 39 H 0.193 0.807 40 H 0.174 0.826 41 H 0.144 0.856 42 H 0.041 0.959 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.970 4.530 -1.279 31.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.167 4.167 3 Si 0.769 3.231 4 H -0.220 1.220 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.072 0.928 9 C -0.015 4.015 10 H 0.032 0.968 11 C -0.137 4.137 12 C -0.164 4.164 13 C -0.020 4.020 14 N -0.347 5.347 15 C 0.288 3.712 16 O -0.470 6.470 17 C -0.085 4.085 18 C -0.089 4.089 19 C -0.221 4.221 20 N -0.041 5.041 21 C -0.077 4.077 22 C -0.162 4.162 23 C -0.108 4.108 24 C -0.139 4.139 25 C -0.052 4.052 26 N -0.246 5.246 27 C -0.013 4.013 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.240 0.760 38 H 0.217 0.783 39 H 0.210 0.790 40 H 0.192 0.808 41 H 0.162 0.838 42 H 0.059 0.941 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 30.008 5.023 -1.884 30.484 hybrid contribution -0.529 1.179 0.353 1.339 sum 29.479 6.202 -1.532 30.163 Atomic orbital electron populations 1.69974 1.07311 1.27739 1.52670 1.25548 0.95113 1.01284 0.94743 0.86078 0.78146 0.81198 0.77643 1.22038 1.22064 1.19566 1.21380 0.91123 0.93151 1.49074 0.92806 1.19425 0.93687 0.95805 0.92543 0.96817 1.21393 0.96029 0.94815 1.01473 1.22024 0.94419 1.02297 0.97689 1.22251 0.99753 0.80765 0.99209 1.48481 1.06225 1.08096 1.71885 1.21373 0.90891 0.83449 0.75484 1.90701 1.76603 1.28150 1.51512 1.20137 0.87946 0.92707 1.07729 1.20578 0.97401 0.96932 0.93972 1.22872 1.07129 0.86150 1.05941 1.43046 1.27335 1.12952 1.20750 1.22458 0.94407 0.88560 1.02272 1.21389 1.01957 0.96906 0.95938 1.21509 0.93456 0.99528 0.96339 1.20525 1.02196 0.89779 1.01406 1.21434 0.94843 0.97863 0.91062 1.70564 1.24227 1.01672 1.28159 1.22002 0.79601 0.99696 1.00013 0.92378 0.92519 0.92440 0.91878 0.87206 0.90067 0.85684 0.84993 0.83100 0.75983 0.78290 0.78987 0.80813 0.83844 0.94121 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.79 13.96 21.45 0.30 -60.49 16 2 C 0.03 1.97 5.45 84.65 0.46 2.43 16 3 Si 0.94 53.47 24.32 68.60 1.67 55.14 16 4 H -0.29 -17.44 6.92 99.48 0.69 -16.75 16 5 H -0.29 -16.21 7.11 99.48 0.71 -15.51 16 6 H -0.27 -15.42 6.53 99.48 0.65 -14.77 16 7 C -0.51 -29.75 9.15 25.60 0.23 -29.52 16 8 H 0.05 3.34 7.99 -2.91 -0.02 3.32 16 9 C 0.01 0.24 1.84 -11.46 -0.02 0.22 16 10 H 0.01 0.70 7.21 -2.39 -0.02 0.68 16 11 C -0.10 -3.59 5.10 30.62 0.16 -3.44 16 12 C -0.13 -3.10 6.10 30.82 0.19 -2.91 16 13 C 0.10 2.37 6.37 86.51 0.55 2.92 16 14 N -0.61 -22.68 2.97 -818.07 -2.43 -25.11 16 15 C 0.50 19.36 7.69 87.66 0.67 20.04 16 16 O -0.59 -30.49 14.97 -3.03 -0.05 -30.54 16 17 C -0.05 -1.14 4.61 29.10 0.13 -1.00 16 18 C 0.04 1.34 5.84 41.58 0.24 1.58 16 19 C -0.09 -2.08 11.63 83.19 0.97 -1.11 16 20 N -0.37 -8.73 2.94 -352.15 -1.04 -9.77 16 21 C 0.04 0.60 10.95 83.21 0.91 1.52 16 22 C -0.14 -1.47 9.99 22.06 0.22 -1.25 16 23 C -0.08 -1.20 10.07 22.30 0.22 -0.97 16 24 C -0.12 -2.82 10.11 22.42 0.23 -2.60 16 25 C 0.19 5.93 7.81 134.11 1.05 6.98 16 26 N -0.53 -19.82 10.67 -182.41 -1.95 -21.76 16 27 C 0.11 5.23 5.11 86.36 0.44 5.67 16 28 H 0.27 16.40 8.31 -92.70 -0.77 15.63 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.13 1.74 5.93 -2.39 -0.01 1.73 16 35 H 0.13 2.59 7.93 -2.38 -0.02 2.57 16 36 H 0.15 2.32 7.66 -2.39 -0.02 2.30 16 37 H 0.22 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.20 1.01 8.06 -2.91 -0.02 0.98 16 39 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 40 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 42 H 0.04 2.26 2.32 -2.39 -0.01 2.25 16 43 H 0.06 2.73 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -96.29 344.68 4.11 -92.18 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 0.94 Total: 1.79 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 6.66 Total: -1.45 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -5.11 Total: -117.13 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.05 Total: -30.54 kcal Atomic # 14 Polarization: 53.47 SS G_CDS: 1.67 Total: 55.14 kcal Total: -96.29 4.11 -92.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.813 kcal (2) G-P(sol) polarization free energy of solvation -96.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds