Wall clock time and date at job start Fri Apr 10 2020 22:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38754 * 119.84656 * 2 1 4 4 C 1.37769 * 120.63405 * 180.02562 * 3 2 1 5 5 C 1.39125 * 119.92873 * 359.75242 * 4 3 2 6 6 N 1.37952 * 133.18652 * 179.62501 * 5 4 3 7 7 H 0.97005 * 124.78566 * 0.68806 * 6 5 4 8 8 C 1.35469 * 110.42951 * 180.41859 * 6 5 4 9 9 C 1.36370 * 109.76859 * 0.22872 * 8 6 5 10 10 C 1.46907 * 126.77321 * 180.02562 * 9 8 6 11 11 O 1.21675 * 120.00305 * 179.97438 * 10 9 8 12 12 N 1.34777 * 120.00098 * 359.97438 * 10 9 8 13 13 C 1.46498 * 120.00409 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47102 * 179.97438 * 13 12 10 15 15 C 1.53949 * 113.74375 * 273.74317 * 14 13 12 16 16 N 1.47813 * 86.03644 * 222.08596 * 15 14 13 17 17 C 1.36939 * 134.45910 * 204.64641 * 16 15 14 18 18 H 1.07991 * 120.00504 * 173.34724 * 17 16 15 19 19 C 1.38816 * 119.99387 * 353.34569 * 17 16 15 20 20 N 1.31622 * 120.00438 * 5.06684 * 19 17 16 21 21 Si 1.86803 * 119.99840 * 185.06340 * 19 17 16 22 22 H 1.48500 * 109.47106 * 94.98647 * 21 19 17 23 23 H 1.48498 * 109.47097 * 214.98966 * 21 19 17 24 24 H 1.48503 * 109.47106 * 334.99209 * 21 19 17 25 25 C 1.47582 * 91.05305 * 24.55101 * 16 15 14 26 26 C 1.40394 * 119.35724 * 0.48931 * 5 4 3 27 27 C 1.37751 * 119.85240 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47300 * 269.97221 * 1 2 3 29 29 H 1.09006 * 109.47344 * 29.97634 * 1 2 3 30 30 H 1.09003 * 109.47111 * 149.98034 * 1 2 3 31 31 H 1.08001 * 119.68677 * 0.04336 * 3 2 1 32 32 H 1.08002 * 120.03160 * 179.97438 * 4 3 2 33 33 H 1.08004 * 125.12151 * 180.21445 * 8 6 5 34 34 H 0.96998 * 119.99790 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.47721 * 300.00209 * 13 12 10 36 36 H 1.09003 * 109.47014 * 60.00190 * 13 12 10 37 37 H 1.09000 * 112.94385 * 45.33690 * 14 13 12 38 38 H 1.08990 * 113.76909 * 336.35081 * 15 14 13 39 39 H 1.08995 * 113.76973 * 107.74990 * 15 14 13 40 40 H 0.96995 * 119.99997 * 179.97438 * 20 19 17 41 41 H 1.08998 * 113.76972 * 221.15663 * 25 16 15 42 42 H 1.08998 * 113.77021 * 89.75114 * 25 16 15 43 43 H 1.08006 * 120.16108 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.2035 0.0000 4 6 3.5751 1.2224 -0.0005 5 6 4.2857 0.0264 0.0041 6 7 5.6327 -0.2715 -0.0017 7 1 6.3451 0.3868 -0.0012 8 6 5.8202 -1.6132 -0.0021 9 6 4.6131 -2.2476 -0.0017 10 6 4.3821 -3.6984 -0.0014 11 8 3.2458 -4.1336 -0.0007 12 7 5.4288 -4.5475 -0.0021 13 6 5.1985 -5.9943 -0.0012 14 6 6.5429 -6.7247 -0.0028 15 6 7.1296 -6.9402 -1.4097 16 7 7.4868 -8.2959 -0.9412 17 6 8.4334 -9.2171 -1.3026 18 1 8.5603 -10.1178 -0.7205 19 6 9.2299 -8.9930 -2.4172 20 7 9.1452 -7.8521 -3.0681 21 14 10.4222 -10.3106 -2.9932 22 1 9.7817 -11.1279 -4.0548 23 1 11.6466 -9.6678 -3.5344 24 1 10.7861 -11.1836 -1.8484 25 6 6.4158 -8.2570 0.0734 26 6 3.5853 -1.1904 -0.0011 27 6 2.1926 -1.1947 -0.0005 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6499 2.1344 0.0007 32 1 4.1027 2.1648 -0.0009 33 1 6.7811 -2.1063 -0.0028 34 1 6.3346 -4.2006 -0.0031 35 1 4.6348 -6.2720 0.8894 36 1 4.6331 -6.2727 -0.8906 37 1 7.2541 -6.3073 0.7100 38 1 6.3824 -6.9324 -2.2032 39 1 7.9905 -6.3086 -1.6282 40 1 9.7020 -7.6955 -3.8467 41 1 6.7081 -8.6746 1.0369 42 1 5.4585 -8.6367 -0.2835 43 1 1.6528 -2.1302 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032210491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:36 Heat of formation + Delta-G solvation = 44.819529 kcal Electronic energy + Delta-G solvation = -24503.118292 eV Core-core repulsion = 20935.057801 eV Total energy + Delta-G solvation = -3568.060491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.38716 -40.46082 -39.42540 -38.30645 -35.65795 -34.17776 -33.12210 -32.31672 -30.93107 -29.68644 -27.50616 -27.28991 -26.52942 -24.39729 -23.58676 -23.19226 -21.95982 -21.20225 -20.13506 -19.12783 -18.70793 -17.47292 -17.26692 -16.95595 -16.72921 -16.28972 -15.95432 -15.71909 -15.44547 -15.34590 -15.03097 -14.69943 -14.61619 -14.23334 -14.17522 -13.92421 -13.58396 -13.29555 -13.09131 -12.95580 -12.87928 -12.53482 -12.46800 -12.19628 -12.12125 -11.88591 -11.81592 -11.57566 -11.26231 -10.89095 -10.85081 -10.70762 -10.00244 -9.12562 -8.90048 -8.69933 -7.91962 -5.23844 0.03670 0.56827 1.05212 1.45420 1.47788 1.56249 2.07597 2.32411 2.45935 2.48122 2.95163 3.28791 3.41785 3.71042 3.75847 3.88738 3.95397 4.09087 4.12356 4.32699 4.38050 4.45135 4.49498 4.61508 4.69299 4.75135 4.80808 4.87249 4.89670 4.90511 4.95298 5.12509 5.15441 5.22047 5.26782 5.42875 5.48279 5.56252 5.58161 5.65695 5.67044 5.79340 5.94250 6.15796 6.57044 6.71571 6.92845 7.37772 7.60854 8.57735 9.25822 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.027194 B = 0.002339 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.409879 B =11969.019476 C =12550.883171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.111 4.111 3 C -0.106 4.106 4 C -0.115 4.115 5 C 0.067 3.933 6 N -0.559 5.559 7 H 0.440 0.560 8 C 0.145 3.855 9 C -0.276 4.276 10 C 0.584 3.416 11 O -0.596 6.596 12 N -0.712 5.712 13 C 0.144 3.856 14 C -0.113 4.113 15 C 0.170 3.830 16 N -0.646 5.646 17 C -0.235 4.235 18 H 0.084 0.916 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.976 3.024 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.266 1.266 25 C 0.124 3.876 26 C -0.089 4.089 27 C -0.103 4.103 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.220 0.780 34 H 0.412 0.588 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.109 0.891 38 H 0.009 0.991 39 H 0.044 0.956 40 H 0.249 0.751 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.256 23.260 9.154 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.125 4.125 4 C -0.135 4.135 5 C -0.038 4.038 6 N -0.162 5.162 7 H 0.282 0.718 8 C 0.010 3.990 9 C -0.287 4.287 10 C 0.374 3.626 11 O -0.478 6.478 12 N -0.363 5.363 13 C 0.020 3.980 14 C -0.132 4.132 15 C 0.045 3.955 16 N -0.373 5.373 17 C -0.364 4.364 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.805 3.195 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.190 1.190 25 C -0.001 4.001 26 C -0.094 4.094 27 C -0.122 4.122 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.175 0.825 32 H 0.174 0.826 33 H 0.236 0.764 34 H 0.248 0.752 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.127 0.873 38 H 0.027 0.973 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.692 22.889 8.988 26.432 hybrid contribution 1.231 -0.892 -0.863 1.748 sum -8.460 21.997 8.126 24.929 Atomic orbital electron populations 1.20776 0.89661 1.03261 1.02860 1.20052 0.97342 0.92426 1.01327 1.21079 0.93278 0.98010 1.00136 1.20420 0.93956 0.95308 1.03774 1.18431 0.83924 0.95044 1.06440 1.41509 1.06065 1.06975 1.61634 0.71797 1.22646 0.99310 0.82901 0.94136 1.20004 0.93974 0.91393 1.23291 1.17604 0.84202 0.85729 0.75044 1.90717 1.24182 1.79590 1.53343 1.45685 1.09342 1.06193 1.75087 1.21142 0.96441 0.79079 1.01375 1.23413 0.95710 0.95388 0.98701 1.22196 0.95232 0.85764 0.92327 1.46418 1.33388 1.16920 1.40562 1.19437 1.09336 0.99789 1.07797 0.89865 1.25655 1.02670 0.99697 0.98061 1.70001 1.43774 1.24503 1.21767 0.85088 0.77756 0.78424 0.78262 1.21842 1.21895 1.19038 1.22705 0.91066 0.93323 0.93007 1.19066 0.93450 0.92161 1.04691 1.20547 0.92414 0.98177 1.01035 0.90581 0.89586 0.92430 0.82544 0.82631 0.76399 0.75197 0.90937 0.93395 0.87252 0.97321 0.93736 0.94240 0.91823 0.93899 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.00 71.23 0.71 -0.99 16 2 C -0.11 -2.32 5.88 -19.86 -0.12 -2.43 16 3 C -0.11 -1.68 9.66 22.28 0.22 -1.46 16 4 C -0.11 -1.73 10.07 22.37 0.23 -1.50 16 5 C 0.07 1.31 7.26 38.92 0.28 1.59 16 6 N -0.56 -7.35 5.99 -187.09 -1.12 -8.47 16 7 H 0.44 2.12 8.96 -92.70 -0.83 1.29 16 8 C 0.15 2.34 11.33 83.70 0.95 3.29 16 9 C -0.28 -7.29 6.27 -19.02 -0.12 -7.41 16 10 C 0.58 18.80 7.80 86.51 0.67 19.47 16 11 O -0.60 -24.26 16.16 -4.27 -0.07 -24.33 16 12 N -0.71 -19.66 5.54 -466.86 -2.59 -22.25 16 13 C 0.14 4.53 5.51 86.38 0.48 5.00 16 14 C -0.11 -3.86 3.93 -10.13 -0.04 -3.90 16 15 C 0.17 7.88 6.99 86.44 0.60 8.49 16 16 N -0.65 -33.13 3.70 -716.10 -2.65 -35.78 16 17 C -0.24 -13.25 10.70 84.03 0.90 -12.35 16 18 H 0.08 4.48 7.83 -2.92 -0.02 4.46 16 19 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 20 N -0.95 -57.22 11.51 21.65 0.25 -56.97 16 21 Si 0.98 45.71 29.56 68.60 2.03 47.74 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 C 0.12 4.89 8.51 86.49 0.74 5.62 16 26 C -0.09 -2.45 6.27 -20.08 -0.13 -2.57 16 27 C -0.10 -2.89 9.49 22.40 0.21 -2.68 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 0.94 8.08 -2.38 -0.02 0.92 16 30 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 31 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.22 1.67 7.38 -2.91 -0.02 1.65 16 34 H 0.41 8.74 7.35 -92.71 -0.68 8.06 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 1.72 7.87 -2.39 -0.02 1.70 16 37 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.01 0.45 7.92 -2.39 -0.02 0.43 16 39 H 0.04 2.24 7.36 -2.39 -0.02 2.23 16 40 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 43 H 0.10 3.38 7.45 -2.91 -0.02 3.36 16 Total: -1.00 -81.73 362.34 1.43 -80.29 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -0.47 Total: 15.02 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 6.05 Total: 4.75 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -6.11 Total: -123.47 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.07 Total: -24.33 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -81.73 1.43 -80.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032210491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.111 kcal (2) G-P(sol) polarization free energy of solvation -81.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds