Wall clock time and date at job start Fri Apr 10 2020 22:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00342 * 2 1 4 4 H 1.48507 * 109.47059 * 240.00015 * 3 2 1 5 5 H 1.48500 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47608 * 119.99722 * 3 2 1 7 7 C 1.38813 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00000 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00388 * 0.02562 * 7 2 1 10 10 C 1.47870 * 126.94154 * 359.96928 * 9 7 2 11 11 C 1.56017 * 105.10355 * 182.02594 * 10 9 7 12 12 H 1.09000 * 116.24907 * 159.68554 * 11 10 9 13 13 C 1.57086 * 99.60434 * 32.80810 * 11 10 9 14 14 C 1.49285 * 126.94527 * 179.97438 * 9 7 2 15 15 H 1.08998 * 116.15221 * 16.68294 * 14 9 7 16 16 C 1.56000 * 104.31538 * 246.59197 * 14 9 7 17 17 N 1.47868 * 105.11287 * 289.11337 * 16 14 9 18 18 C 1.34780 * 126.94103 * 181.87620 * 17 16 14 19 19 O 1.21286 * 119.99777 * 184.57580 * 18 17 16 20 20 C 1.50693 * 120.00145 * 4.58174 * 18 17 16 21 21 C 1.50701 * 115.55271 * 66.28300 * 20 18 17 22 22 C 1.38226 * 119.61710 * 9.89510 * 21 20 18 23 23 C 1.38630 * 119.16339 * 180.02562 * 22 21 20 24 24 C 1.38675 * 118.41852 * 359.97438 * 23 22 21 25 25 C 1.38182 * 119.16373 * 359.97438 * 24 23 22 26 26 N 1.31851 * 119.62247 * 189.91066 * 21 20 18 27 27 C 1.53001 * 117.49808 * 211.95300 * 20 18 17 28 28 C 1.52999 * 117.49823 * 280.61323 * 20 18 17 29 29 H 0.97005 * 119.99823 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.31212 * 63.11631 * 10 9 7 31 31 H 1.09006 * 110.31560 * 300.93417 * 10 9 7 32 32 H 1.08994 * 112.37071 * 64.27606 * 13 11 10 33 33 H 1.09008 * 112.36270 * 191.71383 * 13 11 10 34 34 H 1.09004 * 110.41257 * 170.14998 * 16 14 9 35 35 H 1.08992 * 110.20505 * 47.96866 * 16 14 9 36 36 H 1.08004 * 120.41873 * 359.97438 * 22 21 20 37 37 H 1.07996 * 120.79093 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.41733 * 179.97438 * 24 23 22 39 39 H 1.07999 * 119.61664 * 179.97438 * 25 24 23 40 40 H 1.08998 * 117.50084 * 214.99951 * 27 20 18 41 41 H 1.08998 * 117.49776 * 0.02562 * 27 20 18 42 42 H 1.09000 * 117.49805 * 359.97438 * 28 20 18 43 43 H 1.09003 * 117.49820 * 144.99783 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1424 -2.5669 0.0006 11 6 -0.3640 -4.1103 0.0538 12 1 -1.3414 -4.4453 0.4011 13 6 0.8839 -4.5248 0.9133 14 6 1.9101 -3.7617 0.0005 15 1 2.9606 -3.8368 0.2814 16 6 1.5086 -4.3518 -1.3866 17 7 0.0508 -4.5837 -1.2996 18 6 -0.7422 -5.1195 -2.2486 19 8 -1.9413 -5.1766 -2.0756 20 6 -0.1390 -5.6478 -3.5245 21 6 0.7481 -6.8565 -3.3724 22 6 0.7947 -7.5217 -2.1616 23 6 1.6144 -8.6321 -2.0319 24 6 2.3596 -9.0342 -3.1301 25 6 2.2606 -8.3201 -4.3090 26 7 1.4711 -7.2672 -4.3956 27 6 -0.9792 -5.5441 -4.7990 28 6 0.2330 -4.6299 -4.6045 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5739 -2.1537 -0.9110 31 1 -0.5815 -2.0910 0.8775 32 1 0.8450 -4.1183 1.9239 33 1 1.0489 -5.6023 0.9121 34 1 2.0313 -5.2915 -1.5657 35 1 1.7315 -3.6370 -2.1786 36 1 0.2006 -7.1800 -1.3268 37 1 1.6713 -9.1712 -1.0979 38 1 3.0090 -9.8946 -3.0649 39 1 2.8380 -8.6265 -5.1687 40 1 -0.8903 -6.3501 -5.5274 41 1 -1.9681 -5.0934 -4.7146 42 1 0.0411 -3.5781 -4.3922 43 1 1.1195 -4.8345 -5.2049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032404172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:40 Heat of formation + Delta-G solvation = 95.758498 kcal Electronic energy + Delta-G solvation = -26868.095669 eV Core-core repulsion = 23302.244057 eV Total energy + Delta-G solvation = -3565.851612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88939 -39.77578 -38.26916 -36.10166 -33.64371 -32.50363 -31.59738 -31.04383 -29.08611 -28.56234 -25.48645 -25.08103 -23.68402 -23.45920 -22.35187 -22.06366 -20.12492 -19.74255 -18.47371 -17.74244 -16.71406 -16.31596 -16.15848 -15.78381 -15.36201 -14.87896 -14.81519 -14.16814 -14.06439 -13.84234 -13.56436 -13.27699 -12.99842 -12.76909 -12.22176 -12.06272 -11.78061 -11.69251 -11.41273 -11.33205 -11.04758 -10.90084 -10.86024 -10.75162 -10.66351 -10.57683 -10.27613 -10.10260 -9.95153 -9.64791 -9.58132 -9.44151 -8.87097 -8.71244 -8.02467 -6.94011 -5.77626 -3.12240 0.95914 1.16096 2.84390 3.22338 3.37063 3.41425 3.43338 3.50957 4.05807 4.18270 4.41125 4.43665 4.70688 4.72154 4.95193 4.96737 5.02717 5.07899 5.18062 5.18501 5.33336 5.36545 5.54989 5.58115 5.61797 5.73709 5.75632 5.83053 5.94139 5.97258 6.02160 6.10349 6.17825 6.25952 6.27065 6.38037 6.48343 6.55906 6.57561 6.68099 7.40632 7.47275 7.70510 7.86173 8.03998 8.09416 8.53029 9.09183 9.70071 10.38995 11.34362 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.004218 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.405506 B = 6636.272054 C = 6802.075010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.596 5.596 10 C 0.175 3.825 11 C 0.097 3.903 12 H 0.114 0.886 13 C -0.151 4.151 14 C 0.141 3.859 15 H 0.105 0.895 16 C 0.089 3.911 17 N -0.597 5.597 18 C 0.568 3.432 19 O -0.546 6.546 20 C -0.120 4.120 21 C 0.184 3.816 22 C -0.160 4.160 23 C -0.069 4.069 24 C -0.182 4.182 25 C 0.103 3.897 26 N -0.482 5.482 27 C -0.125 4.125 28 C -0.134 4.134 29 H 0.254 0.746 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.156 0.844 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.252 -17.057 -5.244 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.050 3.950 11 C -0.006 4.006 12 H 0.132 0.868 13 C -0.190 4.190 14 C 0.032 3.968 15 H 0.123 0.877 16 C -0.036 4.036 17 N -0.330 5.330 18 C 0.355 3.645 19 O -0.424 6.424 20 C -0.124 4.124 21 C 0.047 3.953 22 C -0.180 4.180 23 C -0.095 4.095 24 C -0.202 4.202 25 C -0.054 4.054 26 N -0.191 5.191 27 C -0.163 4.163 28 C -0.171 4.171 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.173 0.827 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.459 -16.352 -5.998 17.757 hybrid contribution 0.603 0.385 0.784 1.062 sum 4.063 -15.967 -5.213 17.281 Atomic orbital electron populations 1.69904 1.04938 1.25438 1.56279 1.24804 0.95665 0.97674 1.01967 0.86203 0.78459 0.83191 0.77887 1.21161 1.21611 1.21117 1.18992 0.90352 0.82075 1.44637 0.90255 1.45213 1.01308 0.99224 1.86271 1.21918 0.84685 0.87042 1.01342 1.24386 0.97694 0.97981 0.80501 0.86836 1.24166 0.96790 0.98799 0.99279 1.23167 0.96493 0.86349 0.90827 0.87693 1.23260 0.79663 0.98810 1.01873 1.49127 1.09464 1.59261 1.15126 1.18685 0.85692 0.77552 0.82602 1.90675 1.14290 1.58569 1.78879 1.19997 1.03750 0.97422 0.91257 1.19784 0.92869 0.93348 0.89283 1.21944 1.00565 0.96670 0.98801 1.21555 0.93923 0.95130 0.98917 1.22104 1.01601 1.01993 0.94503 1.22683 0.94949 0.90528 0.97248 1.67262 1.06355 1.14116 1.31348 1.23011 0.96395 1.02322 0.94580 1.23091 1.00147 0.95817 0.98075 0.93525 0.93440 0.92603 0.89687 0.91795 0.93161 0.91061 0.84923 0.84751 0.84852 0.82687 0.87738 0.87509 0.87829 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.56 55.49 0.59 -26.01 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.14 10.37 -15.06 -0.16 -6.30 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.17 3.03 -156.33 -0.47 -14.64 16 10 C 0.18 4.16 4.76 -1.68 -0.01 4.15 16 11 C 0.10 1.84 5.24 -62.56 -0.33 1.51 16 12 H 0.11 2.09 8.07 -51.93 -0.42 1.67 16 13 C -0.15 -2.49 6.81 -22.28 -0.15 -2.64 16 14 C 0.14 2.59 5.52 -62.54 -0.35 2.25 16 15 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 16 C 0.09 1.56 5.77 -1.69 -0.01 1.55 16 17 N -0.60 -10.94 2.62 -156.81 -0.41 -11.35 16 18 C 0.57 10.58 5.63 -10.99 -0.06 10.52 16 19 O -0.55 -11.76 17.08 5.55 0.09 -11.67 16 20 C -0.12 -1.89 1.80 -156.81 -0.28 -2.17 16 21 C 0.18 2.64 5.73 -82.59 -0.47 2.17 16 22 C -0.16 -2.11 8.16 -39.44 -0.32 -2.43 16 23 C -0.07 -0.71 10.18 -39.28 -0.40 -1.11 16 24 C -0.18 -1.66 10.11 -39.44 -0.40 -2.06 16 25 C 0.10 1.06 11.18 -17.55 -0.20 0.87 16 26 N -0.48 -6.37 9.46 -9.47 -0.09 -6.46 16 27 C -0.13 -1.77 9.65 -26.69 -0.26 -2.02 16 28 C -0.13 -1.94 9.73 -26.69 -0.26 -2.20 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.05 1.31 7.68 -51.93 -0.40 0.91 16 31 H 0.06 1.46 7.46 -51.93 -0.39 1.07 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.05 0.78 6.53 -51.93 -0.34 0.44 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.13 1.88 6.72 -52.48 -0.35 1.53 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.11 1.56 8.01 -51.93 -0.42 1.14 16 42 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.11 1.51 7.78 -51.93 -0.40 1.11 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -31.69 351.18 -9.84 -41.52 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.07 Total: 4.85 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -3.75 Total: 1.88 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.39 Total: -58.46 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.69 -9.84 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032404172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.283 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds