Wall clock time and date at job start Fri Apr 10 2020 22:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00342 * 2 1 4 4 H 1.48507 * 109.47059 * 240.00015 * 3 2 1 5 5 H 1.48500 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47608 * 119.99722 * 3 2 1 7 7 C 1.38813 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00000 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00388 * 0.02562 * 7 2 1 10 10 C 1.47870 * 126.94154 * 359.96928 * 9 7 2 11 11 C 1.56017 * 105.10355 * 182.02594 * 10 9 7 12 12 H 1.09000 * 116.24907 * 159.68554 * 11 10 9 13 13 C 1.57086 * 99.60434 * 32.80810 * 11 10 9 14 14 C 1.49285 * 126.94527 * 179.97438 * 9 7 2 15 15 H 1.08998 * 116.15221 * 16.68294 * 14 9 7 16 16 C 1.56000 * 104.31538 * 246.59197 * 14 9 7 17 17 N 1.47868 * 105.11287 * 289.11337 * 16 14 9 18 18 C 1.34780 * 126.94103 * 181.87620 * 17 16 14 19 19 O 1.21286 * 119.99777 * 184.57580 * 18 17 16 20 20 C 1.50693 * 120.00145 * 4.58174 * 18 17 16 21 21 C 1.50701 * 115.55271 * 66.28300 * 20 18 17 22 22 C 1.38226 * 119.61710 * 9.89510 * 21 20 18 23 23 C 1.38630 * 119.16339 * 180.02562 * 22 21 20 24 24 C 1.38675 * 118.41852 * 359.97438 * 23 22 21 25 25 C 1.38182 * 119.16373 * 359.97438 * 24 23 22 26 26 N 1.31851 * 119.62247 * 189.91066 * 21 20 18 27 27 C 1.53001 * 117.49808 * 211.95300 * 20 18 17 28 28 C 1.52999 * 117.49823 * 280.61323 * 20 18 17 29 29 H 0.97005 * 119.99823 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.31212 * 63.11631 * 10 9 7 31 31 H 1.09006 * 110.31560 * 300.93417 * 10 9 7 32 32 H 1.08994 * 112.37071 * 64.27606 * 13 11 10 33 33 H 1.09008 * 112.36270 * 191.71383 * 13 11 10 34 34 H 1.09004 * 110.41257 * 170.14998 * 16 14 9 35 35 H 1.08992 * 110.20505 * 47.96866 * 16 14 9 36 36 H 1.08004 * 120.41873 * 359.97438 * 22 21 20 37 37 H 1.07996 * 120.79093 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.41733 * 179.97438 * 24 23 22 39 39 H 1.07999 * 119.61664 * 179.97438 * 25 24 23 40 40 H 1.08998 * 117.50084 * 214.99951 * 27 20 18 41 41 H 1.08998 * 117.49776 * 0.02562 * 27 20 18 42 42 H 1.09000 * 117.49805 * 359.97438 * 28 20 18 43 43 H 1.09003 * 117.49820 * 144.99783 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1424 -2.5669 0.0006 11 6 -0.3640 -4.1103 0.0538 12 1 -1.3414 -4.4453 0.4011 13 6 0.8839 -4.5248 0.9133 14 6 1.9101 -3.7617 0.0005 15 1 2.9606 -3.8368 0.2814 16 6 1.5086 -4.3518 -1.3866 17 7 0.0508 -4.5837 -1.2996 18 6 -0.7422 -5.1195 -2.2486 19 8 -1.9413 -5.1766 -2.0756 20 6 -0.1390 -5.6478 -3.5245 21 6 0.7481 -6.8565 -3.3724 22 6 0.7947 -7.5217 -2.1616 23 6 1.6144 -8.6321 -2.0319 24 6 2.3596 -9.0342 -3.1301 25 6 2.2606 -8.3201 -4.3090 26 7 1.4711 -7.2672 -4.3956 27 6 -0.9792 -5.5441 -4.7990 28 6 0.2330 -4.6299 -4.6045 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5739 -2.1537 -0.9110 31 1 -0.5815 -2.0910 0.8775 32 1 0.8450 -4.1183 1.9239 33 1 1.0489 -5.6023 0.9121 34 1 2.0313 -5.2915 -1.5657 35 1 1.7315 -3.6370 -2.1786 36 1 0.2006 -7.1800 -1.3268 37 1 1.6713 -9.1712 -1.0979 38 1 3.0090 -9.8946 -3.0649 39 1 2.8380 -8.6265 -5.1687 40 1 -0.8903 -6.3501 -5.5274 41 1 -1.9681 -5.0934 -4.7146 42 1 0.0411 -3.5781 -4.3922 43 1 1.1195 -4.8345 -5.2049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032404172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:39 Heat of formation + Delta-G solvation = 77.116851 kcal Electronic energy + Delta-G solvation = -26868.904032 eV Core-core repulsion = 23302.244057 eV Total energy + Delta-G solvation = -3566.659974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.11741 -41.01463 -39.68142 -37.39385 -35.49003 -33.48466 -33.16085 -32.00059 -30.77074 -30.28329 -27.01965 -26.56843 -25.08752 -24.40313 -23.58242 -23.32329 -21.58142 -21.32132 -19.98193 -19.10054 -18.29241 -17.59816 -17.29802 -17.13827 -16.64197 -16.15806 -16.15077 -15.80233 -15.29984 -15.12173 -14.99125 -14.56000 -14.18225 -13.90954 -13.81445 -13.56489 -13.38555 -13.12158 -12.87706 -12.77929 -12.68994 -12.55813 -12.36035 -12.19894 -12.11690 -11.99027 -11.85375 -11.76743 -11.54511 -11.01395 -10.78841 -10.71492 -10.40508 -9.76428 -9.60804 -8.92383 -7.84961 -5.20868 0.11471 0.36419 1.40361 1.46393 1.49157 1.55281 1.79985 2.48034 2.51574 3.05440 3.11837 3.27720 3.33079 3.42878 3.53560 3.75631 3.84571 3.87628 3.95224 4.01245 4.10641 4.17375 4.25004 4.28579 4.43580 4.51028 4.59532 4.63135 4.70902 4.79330 4.85848 4.87985 4.90026 4.98791 5.09270 5.10208 5.21858 5.23156 5.30196 5.42927 5.51327 5.64268 5.78566 6.08810 6.54966 7.01821 7.01979 7.03440 7.70072 8.40328 9.25944 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.004218 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.405506 B = 6636.272054 C = 6802.075010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.278 1.278 5 H -0.302 1.302 6 H -0.273 1.273 7 C -0.233 4.233 8 H 0.094 0.906 9 N -0.615 5.615 10 C 0.188 3.812 11 C 0.100 3.900 12 H 0.117 0.883 13 C -0.125 4.125 14 C 0.135 3.865 15 H 0.134 0.866 16 C 0.104 3.896 17 N -0.597 5.597 18 C 0.566 3.434 19 O -0.583 6.583 20 C -0.126 4.126 21 C 0.164 3.836 22 C -0.178 4.178 23 C -0.066 4.066 24 C -0.167 4.167 25 C 0.097 3.903 26 N -0.501 5.501 27 C -0.118 4.118 28 C -0.128 4.128 29 H 0.244 0.756 30 H -0.005 1.005 31 H 0.021 0.979 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.117 0.883 37 H 0.163 0.837 38 H 0.172 0.828 39 H 0.186 0.814 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.412 -20.348 -5.367 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.229 1.229 6 H -0.198 1.198 7 C -0.361 4.361 8 H 0.112 0.888 9 N -0.339 5.339 10 C 0.062 3.938 11 C -0.003 4.003 12 H 0.135 0.865 13 C -0.164 4.164 14 C 0.029 3.971 15 H 0.151 0.849 16 C -0.021 4.021 17 N -0.328 5.328 18 C 0.354 3.646 19 O -0.464 6.464 20 C -0.130 4.130 21 C 0.027 3.973 22 C -0.198 4.198 23 C -0.092 4.092 24 C -0.186 4.186 25 C -0.060 4.060 26 N -0.210 5.210 27 C -0.155 4.155 28 C -0.166 4.166 29 H 0.053 0.947 30 H 0.013 0.987 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.135 0.865 37 H 0.180 0.820 38 H 0.190 0.810 39 H 0.203 0.797 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.672 -19.682 -6.120 21.664 hybrid contribution -0.335 1.297 0.780 1.550 sum 6.337 -18.385 -5.340 20.166 Atomic orbital electron populations 1.70153 1.06587 1.25216 1.58572 1.25637 0.96364 1.01104 1.02981 0.85176 0.77028 0.78930 0.78342 1.20403 1.22920 1.19825 1.19481 0.91205 0.83128 1.42303 0.88823 1.45454 1.01435 1.00930 1.86079 1.21513 0.84908 0.90159 0.97183 1.24254 0.99517 0.94415 0.82119 0.86479 1.24059 0.93419 1.00818 0.98136 1.23573 0.98288 0.83507 0.91755 0.84874 1.23059 0.79200 0.99496 1.00344 1.49144 1.09937 1.58863 1.14859 1.19230 0.85252 0.76806 0.83297 1.90643 1.15950 1.60085 1.79769 1.19923 1.04710 0.98655 0.89694 1.19531 0.93955 0.93384 0.90419 1.21914 1.01762 0.98206 0.97943 1.21910 0.92751 0.93942 1.00581 1.22533 1.00679 1.02204 0.93232 1.23311 0.94190 0.89561 0.98973 1.67209 1.07065 1.15575 1.31155 1.23035 0.95603 1.02457 0.94426 1.23011 1.00931 0.94608 0.98046 0.94711 0.98719 0.96118 0.89632 0.87810 0.90027 0.93606 0.86502 0.81975 0.81047 0.79687 0.85878 0.88682 0.89927 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.46 10.56 21.65 0.23 -58.23 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 3 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.23 -12.37 10.37 84.03 0.87 -11.50 16 8 H 0.09 4.61 7.83 -2.91 -0.02 4.58 16 9 N -0.61 -29.64 3.03 -648.51 -1.96 -31.60 16 10 C 0.19 9.45 4.76 87.16 0.42 9.87 16 11 C 0.10 3.86 5.24 46.94 0.25 4.11 16 12 H 0.12 4.44 8.07 -2.39 -0.02 4.42 16 13 C -0.13 -3.86 6.81 33.48 0.23 -3.63 16 14 C 0.14 4.75 5.52 46.94 0.26 5.01 16 15 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 16 C 0.10 3.51 5.77 87.16 0.50 4.01 16 17 N -0.60 -22.07 2.62 -768.42 -2.01 -24.08 16 18 C 0.57 21.65 5.63 87.65 0.49 22.14 16 19 O -0.58 -26.26 17.08 -3.05 -0.05 -26.31 16 20 C -0.13 -3.97 1.80 -53.68 -0.10 -4.06 16 21 C 0.16 4.42 5.73 42.55 0.24 4.66 16 22 C -0.18 -4.27 8.16 22.36 0.18 -4.09 16 23 C -0.07 -1.08 10.18 22.47 0.23 -0.85 16 24 C -0.17 -2.18 10.11 22.36 0.23 -1.96 16 25 C 0.10 1.59 11.18 84.67 0.95 2.54 16 26 N -0.50 -11.93 9.46 -183.89 -1.74 -13.67 16 27 C -0.12 -3.35 9.65 30.62 0.30 -3.06 16 28 C -0.13 -3.79 9.73 30.62 0.30 -3.50 16 29 H 0.24 14.75 8.31 -92.70 -0.77 13.97 16 30 H -0.01 -0.32 7.68 -2.39 -0.02 -0.34 16 31 H 0.02 1.16 7.46 -2.38 -0.02 1.15 16 32 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.08 2.31 6.53 -2.38 -0.02 2.29 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.12 3.12 6.72 -2.91 -0.02 3.10 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.09 2.91 8.01 -2.39 -0.02 2.89 16 42 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.13 3.33 7.78 -2.39 -0.02 3.31 16 Total: -1.00 -74.00 351.18 3.31 -70.69 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.01 Total: 19.47 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.81 Total: 16.33 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -5.49 Total: -127.58 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.00 3.31 -70.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032404172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.810 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds