Wall clock time and date at job start Fri Apr 10 2020 22:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47012 * 269.99490 * 3 2 1 5 5 H 1.48502 * 109.47344 * 29.99925 * 3 2 1 6 6 H 1.48511 * 109.46845 * 149.99467 * 3 2 1 7 7 C 1.38812 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00190 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.47861 * 126.94462 * 0.02562 * 9 7 2 11 11 C 1.56015 * 105.10389 * 181.98131 * 10 9 7 12 12 H 1.09005 * 116.90007 * 159.20912 * 11 10 9 13 13 C 1.57083 * 99.60972 * 32.80532 * 11 10 9 14 14 C 1.49287 * 126.94304 * 179.97438 * 9 7 2 15 15 H 1.09009 * 116.15133 * 16.72440 * 14 9 7 16 16 C 1.55999 * 104.31807 * 246.64173 * 14 9 7 17 17 N 1.47870 * 105.10981 * 289.11094 * 16 14 9 18 18 C 1.34773 * 126.94455 * 181.87886 * 17 16 14 19 19 O 1.21283 * 120.00360 * 179.41166 * 18 17 16 20 20 C 1.50706 * 120.00081 * 359.68441 * 18 17 16 21 21 H 1.08994 * 115.54723 * 34.05327 * 20 18 17 22 22 C 1.52998 * 117.49864 * 248.34890 * 20 18 17 23 23 C 1.52992 * 60.00081 * 252.50738 * 22 20 18 24 24 H 1.09009 * 117.51589 * 107.48007 * 23 22 20 25 25 C 1.50699 * 117.50196 * 252.51201 * 23 22 20 26 26 C 1.38653 * 120.78768 * 8.34035 * 25 23 22 27 27 C 1.38199 * 119.16102 * 179.75821 * 26 25 23 28 28 N 1.31873 * 120.76514 * 0.53171 * 27 26 25 29 29 C 1.31871 * 121.72361 * 359.73730 * 28 27 26 30 30 C 1.38201 * 120.76753 * 359.97438 * 29 28 27 31 31 H 0.96998 * 119.99498 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.31746 * 63.07144 * 10 9 7 33 33 H 1.08998 * 110.31604 * 300.88499 * 10 9 7 34 34 H 1.08999 * 112.36877 * 64.26967 * 13 11 10 35 35 H 1.09005 * 112.37052 * 191.72033 * 13 11 10 36 36 H 1.09000 * 110.41779 * 170.14996 * 16 14 9 37 37 H 1.08996 * 110.20599 * 47.96751 * 16 14 9 38 38 H 1.09002 * 117.50214 * 0.02562 * 22 20 18 39 39 H 1.09003 * 117.49665 * 145.01627 * 22 20 18 40 40 H 1.08000 * 120.41596 * 0.02562 * 26 25 23 41 41 H 1.08002 * 119.61796 * 180.24757 * 27 26 25 42 42 H 1.08002 * 119.61260 * 179.97438 * 29 28 27 43 43 H 1.08002 * 120.42026 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1423 -2.5668 -0.0005 11 6 -0.3640 -4.1102 0.0521 12 1 -1.3353 -4.4572 0.4046 13 6 0.8832 -4.5251 0.9123 14 6 1.9101 -3.7618 0.0005 15 1 2.9605 -3.8369 0.2821 16 6 1.5097 -4.3514 -1.3871 17 7 0.0518 -4.5833 -1.3013 18 6 -0.7405 -5.1189 -2.2509 19 8 -1.9265 -5.2619 -2.0414 20 6 -0.1517 -5.5457 -3.5709 21 1 0.8632 -5.9407 -3.5271 22 6 -0.5449 -4.7427 -4.8125 23 6 -1.1020 -6.1525 -4.6052 24 1 -2.1530 -6.2433 -4.3307 25 6 -0.5629 -7.2502 -5.4857 26 6 0.5183 -7.0218 -6.3231 27 6 0.9884 -8.0541 -7.1127 28 7 0.4145 -9.2410 -7.0833 29 6 -0.6187 -9.4925 -6.3034 30 6 -1.1399 -8.5110 -5.4819 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5733 -2.1534 -0.9124 33 1 -0.5821 -2.0913 0.8762 34 1 0.8437 -4.1189 1.9230 35 1 1.0483 -5.6026 0.9108 36 1 2.0324 -5.2910 -1.5662 37 1 1.7332 -3.6363 -2.1787 38 1 -1.2290 -3.9055 -4.6746 39 1 0.2116 -4.6092 -5.5858 40 1 0.9899 -6.0508 -6.3547 41 1 1.8327 -7.8855 -7.7647 42 1 -1.0628 -10.4770 -6.3068 43 1 -1.9866 -8.7230 -4.8457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032410613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:43 Heat of formation + Delta-G solvation = 88.439285 kcal Electronic energy + Delta-G solvation = -25599.092018 eV Core-core repulsion = 22032.923022 eV Total energy + Delta-G solvation = -3566.168997 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68124 -40.03909 -38.49141 -36.42235 -33.66532 -32.20232 -31.52178 -31.35293 -29.15017 -28.59309 -25.36926 -25.09188 -24.42077 -23.52658 -22.92441 -21.10363 -20.17227 -19.85857 -18.42983 -17.78823 -16.97186 -16.44065 -16.19999 -15.80212 -15.69734 -15.11592 -14.73594 -14.16184 -14.08835 -13.92474 -13.86112 -13.46321 -13.16812 -12.75173 -12.16457 -12.15112 -11.91114 -11.78835 -11.68375 -11.35731 -11.20799 -11.06857 -10.89658 -10.82798 -10.65519 -10.60896 -10.30362 -10.11363 -9.70413 -9.69222 -9.62704 -9.36915 -9.33888 -8.74935 -8.05731 -6.97617 -5.81135 -3.15919 0.92012 0.97097 2.76603 3.21726 3.34014 3.38891 3.41518 3.55579 3.92676 4.24058 4.25872 4.37849 4.52840 4.65933 4.73409 4.87534 4.88318 4.98656 5.06249 5.13764 5.16690 5.31006 5.40383 5.49795 5.51697 5.59049 5.64258 5.71903 5.74207 5.80983 5.89857 5.95359 6.13422 6.20866 6.24725 6.36476 6.44746 6.47833 6.54473 6.64758 7.37706 7.43801 7.67235 7.75243 8.02719 8.06448 8.52173 9.05750 9.66644 10.35469 11.30923 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.003059 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.207674 B = 9150.823023 C = 9575.546604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.176 3.824 11 C 0.098 3.902 12 H 0.113 0.887 13 C -0.153 4.153 14 C 0.140 3.860 15 H 0.107 0.893 16 C 0.085 3.915 17 N -0.600 5.600 18 C 0.556 3.444 19 O -0.556 6.556 20 C -0.161 4.161 21 H 0.122 0.878 22 C -0.138 4.138 23 C -0.097 4.097 24 H 0.131 0.869 25 C -0.002 4.002 26 C -0.174 4.174 27 C 0.100 3.900 28 N -0.492 5.492 29 C 0.099 3.901 30 C -0.164 4.164 31 H 0.254 0.746 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 -14.835 -9.061 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.050 3.950 11 C -0.005 4.005 12 H 0.131 0.869 13 C -0.192 4.192 14 C 0.031 3.969 15 H 0.125 0.875 16 C -0.041 4.041 17 N -0.332 5.332 18 C 0.344 3.656 19 O -0.435 6.435 20 C -0.182 4.182 21 H 0.140 0.860 22 C -0.175 4.175 23 C -0.116 4.116 24 H 0.149 0.851 25 C -0.010 4.010 26 C -0.193 4.193 27 C -0.057 4.057 28 N -0.202 5.202 29 C -0.058 4.058 30 C -0.184 4.184 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.995 -15.300 -9.537 18.057 hybrid contribution 0.165 1.652 0.489 1.731 sum 1.160 -13.648 -9.048 16.416 Atomic orbital electron populations 1.69919 1.04952 1.25346 1.56342 1.24825 0.95694 0.97742 1.01986 0.86113 0.78577 0.83415 0.77572 1.21598 1.21669 1.20621 1.19045 0.90400 0.82042 1.44527 0.90134 1.45235 1.01320 0.99283 1.86269 1.21901 0.84708 0.87013 1.01328 1.24377 0.97799 0.97744 0.80555 0.86880 1.24189 0.96839 0.98921 0.99300 1.23177 0.96596 0.86307 0.90794 0.87529 1.23282 0.79764 0.98859 1.02150 1.49096 1.09433 1.59476 1.15236 1.19031 0.85617 0.77193 0.83720 1.90658 1.15415 1.57103 1.80358 1.22283 1.00262 1.05846 0.89811 0.86049 1.23114 1.03205 0.94157 0.97051 1.21101 0.99688 0.92279 0.98506 0.85127 1.19587 0.93757 0.93782 0.93911 1.22109 0.97891 1.01276 0.98071 1.22741 0.98212 0.88138 0.96584 1.67671 1.09388 1.22445 1.20652 1.22752 0.92219 0.99262 0.91562 1.22038 1.01995 0.93382 1.01003 0.93563 0.93481 0.92582 0.89711 0.91669 0.92888 0.90946 0.87288 0.87440 0.84540 0.82727 0.82720 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.56 55.49 0.59 -25.76 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.23 -6.05 10.38 -15.06 -0.16 -6.20 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.00 3.03 -156.34 -0.47 -14.48 16 10 C 0.18 4.13 4.76 -1.68 -0.01 4.13 16 11 C 0.10 1.86 5.24 -62.56 -0.33 1.53 16 12 H 0.11 2.11 8.06 -51.93 -0.42 1.69 16 13 C -0.15 -2.53 6.81 -22.28 -0.15 -2.68 16 14 C 0.14 2.52 5.52 -62.55 -0.35 2.17 16 15 H 0.11 1.71 8.14 -51.92 -0.42 1.29 16 16 C 0.08 1.39 5.83 -1.69 -0.01 1.38 16 17 N -0.60 -10.78 2.95 -156.81 -0.46 -11.24 16 18 C 0.56 9.85 7.68 -10.98 -0.08 9.76 16 19 O -0.56 -11.46 16.60 5.56 0.09 -11.37 16 20 C -0.16 -2.16 5.25 -91.77 -0.48 -2.65 16 21 H 0.12 1.46 7.80 -51.93 -0.41 1.06 16 22 C -0.14 -1.63 9.59 -26.74 -0.26 -1.89 16 23 C -0.10 -1.16 5.59 -91.78 -0.51 -1.68 16 24 H 0.13 1.70 7.67 -51.92 -0.40 1.31 16 25 C 0.00 -0.03 5.64 -104.32 -0.59 -0.61 16 26 C -0.17 -1.67 9.39 -39.44 -0.37 -2.04 16 27 C 0.10 0.96 11.18 -17.55 -0.20 0.77 16 28 N -0.49 -5.46 10.36 -13.25 -0.14 -5.60 16 29 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 30 C -0.16 -1.64 9.84 -39.44 -0.39 -2.02 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 33 H 0.06 1.46 7.46 -51.93 -0.39 1.07 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.11 1.01 6.25 -51.93 -0.32 0.69 16 40 H 0.14 1.08 6.16 -52.49 -0.32 0.76 16 41 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -32.04 353.92 -10.26 -42.29 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.00 Total: 4.03 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -4.17 Total: 0.49 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.49 Total: -57.08 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.04 -10.26 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032410613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.731 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds