Wall clock time and date at job start Fri Apr 10 2020 22:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47012 * 269.99490 * 3 2 1 5 5 H 1.48502 * 109.47344 * 29.99925 * 3 2 1 6 6 H 1.48511 * 109.46845 * 149.99467 * 3 2 1 7 7 C 1.38812 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00190 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.47861 * 126.94462 * 0.02562 * 9 7 2 11 11 C 1.56015 * 105.10389 * 181.98131 * 10 9 7 12 12 H 1.09005 * 116.90007 * 159.20912 * 11 10 9 13 13 C 1.57083 * 99.60972 * 32.80532 * 11 10 9 14 14 C 1.49287 * 126.94304 * 179.97438 * 9 7 2 15 15 H 1.09009 * 116.15133 * 16.72440 * 14 9 7 16 16 C 1.55999 * 104.31807 * 246.64173 * 14 9 7 17 17 N 1.47870 * 105.10981 * 289.11094 * 16 14 9 18 18 C 1.34773 * 126.94455 * 181.87886 * 17 16 14 19 19 O 1.21283 * 120.00360 * 179.41166 * 18 17 16 20 20 C 1.50706 * 120.00081 * 359.68441 * 18 17 16 21 21 H 1.08994 * 115.54723 * 34.05327 * 20 18 17 22 22 C 1.52998 * 117.49864 * 248.34890 * 20 18 17 23 23 C 1.52992 * 60.00081 * 252.50738 * 22 20 18 24 24 H 1.09009 * 117.51589 * 107.48007 * 23 22 20 25 25 C 1.50699 * 117.50196 * 252.51201 * 23 22 20 26 26 C 1.38653 * 120.78768 * 8.34035 * 25 23 22 27 27 C 1.38199 * 119.16102 * 179.75821 * 26 25 23 28 28 N 1.31873 * 120.76514 * 0.53171 * 27 26 25 29 29 C 1.31871 * 121.72361 * 359.73730 * 28 27 26 30 30 C 1.38201 * 120.76753 * 359.97438 * 29 28 27 31 31 H 0.96998 * 119.99498 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.31746 * 63.07144 * 10 9 7 33 33 H 1.08998 * 110.31604 * 300.88499 * 10 9 7 34 34 H 1.08999 * 112.36877 * 64.26967 * 13 11 10 35 35 H 1.09005 * 112.37052 * 191.72033 * 13 11 10 36 36 H 1.09000 * 110.41779 * 170.14996 * 16 14 9 37 37 H 1.08996 * 110.20599 * 47.96751 * 16 14 9 38 38 H 1.09002 * 117.50214 * 0.02562 * 22 20 18 39 39 H 1.09003 * 117.49665 * 145.01627 * 22 20 18 40 40 H 1.08000 * 120.41596 * 0.02562 * 26 25 23 41 41 H 1.08002 * 119.61796 * 180.24757 * 27 26 25 42 42 H 1.08002 * 119.61260 * 179.97438 * 29 28 27 43 43 H 1.08002 * 120.42026 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1423 -2.5668 -0.0005 11 6 -0.3640 -4.1102 0.0521 12 1 -1.3353 -4.4572 0.4046 13 6 0.8832 -4.5251 0.9123 14 6 1.9101 -3.7618 0.0005 15 1 2.9605 -3.8369 0.2821 16 6 1.5097 -4.3514 -1.3871 17 7 0.0518 -4.5833 -1.3013 18 6 -0.7405 -5.1189 -2.2509 19 8 -1.9265 -5.2619 -2.0414 20 6 -0.1517 -5.5457 -3.5709 21 1 0.8632 -5.9407 -3.5271 22 6 -0.5449 -4.7427 -4.8125 23 6 -1.1020 -6.1525 -4.6052 24 1 -2.1530 -6.2433 -4.3307 25 6 -0.5629 -7.2502 -5.4857 26 6 0.5183 -7.0218 -6.3231 27 6 0.9884 -8.0541 -7.1127 28 7 0.4145 -9.2410 -7.0833 29 6 -0.6187 -9.4925 -6.3034 30 6 -1.1399 -8.5110 -5.4819 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5733 -2.1534 -0.9124 33 1 -0.5821 -2.0913 0.8762 34 1 0.8437 -4.1189 1.9230 35 1 1.0483 -5.6026 0.9108 36 1 2.0324 -5.2910 -1.5662 37 1 1.7332 -3.6363 -2.1787 38 1 -1.2290 -3.9055 -4.6746 39 1 0.2116 -4.6092 -5.5858 40 1 0.9899 -6.0508 -6.3547 41 1 1.8327 -7.8855 -7.7647 42 1 -1.0628 -10.4770 -6.3068 43 1 -1.9866 -8.7230 -4.8457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032410613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:43 Heat of formation + Delta-G solvation = 69.779185 kcal Electronic energy + Delta-G solvation = -25599.901181 eV Core-core repulsion = 22032.923022 eV Total energy + Delta-G solvation = -3566.978159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.79765 -41.16498 -39.79229 -37.58895 -35.46451 -33.39717 -32.84749 -32.08279 -30.79084 -30.24859 -26.98500 -26.36165 -25.44259 -24.65194 -24.08792 -22.12835 -21.48731 -21.39884 -19.93797 -19.05295 -18.34800 -17.54173 -17.47521 -17.10454 -16.50960 -16.40467 -16.26727 -15.77591 -15.20476 -15.04612 -14.82515 -14.61390 -14.49231 -13.97534 -13.75925 -13.50439 -13.29923 -13.06996 -12.98327 -12.84232 -12.70500 -12.59211 -12.33482 -12.16619 -12.09168 -12.04993 -11.87175 -11.64399 -11.52662 -11.00943 -10.72363 -10.43466 -10.26282 -10.06769 -9.55763 -8.91442 -7.84531 -5.20358 0.19021 0.22422 1.45942 1.47453 1.48552 1.57241 1.90695 2.48605 2.66591 3.02532 3.24911 3.33376 3.40905 3.57398 3.61966 3.69233 3.75334 3.85659 3.88816 3.97216 4.05254 4.17610 4.19382 4.21002 4.27672 4.54305 4.61762 4.67788 4.75379 4.79335 4.89102 4.91709 4.93493 4.95524 5.01370 5.11593 5.13023 5.24322 5.42671 5.44774 5.52605 5.64937 5.78494 6.09605 6.64180 7.02813 7.04337 7.12047 7.70939 8.41290 9.26619 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.003059 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.207674 B = 9150.823023 C = 9575.546604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.072 4.072 3 Si 0.977 3.023 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.262 1.262 7 C -0.229 4.229 8 H 0.097 0.903 9 N -0.616 5.616 10 C 0.190 3.810 11 C 0.099 3.901 12 H 0.112 0.888 13 C -0.131 4.131 14 C 0.134 3.866 15 H 0.137 0.863 16 C 0.093 3.907 17 N -0.604 5.604 18 C 0.548 3.452 19 O -0.594 6.594 20 C -0.165 4.165 21 H 0.145 0.855 22 C -0.132 4.132 23 C -0.084 4.084 24 H 0.113 0.887 25 C -0.015 4.015 26 C -0.171 4.171 27 C 0.094 3.906 28 N -0.514 5.514 29 C 0.093 3.907 30 C -0.171 4.171 31 H 0.243 0.757 32 H -0.003 1.003 33 H 0.017 0.983 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.156 0.844 41 H 0.180 0.820 42 H 0.177 0.823 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -16.931 -10.043 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.264 4.264 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.187 1.187 7 C -0.357 4.357 8 H 0.114 0.886 9 N -0.341 5.341 10 C 0.063 3.937 11 C -0.005 4.005 12 H 0.130 0.870 13 C -0.170 4.170 14 C 0.028 3.972 15 H 0.154 0.846 16 C -0.031 4.031 17 N -0.336 5.336 18 C 0.338 3.662 19 O -0.477 6.477 20 C -0.186 4.186 21 H 0.163 0.837 22 C -0.169 4.169 23 C -0.103 4.103 24 H 0.131 0.869 25 C -0.023 4.023 26 C -0.191 4.191 27 C -0.062 4.062 28 N -0.224 5.224 29 C -0.063 4.063 30 C -0.191 4.191 31 H 0.052 0.948 32 H 0.015 0.985 33 H 0.035 0.965 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.156 0.844 40 H 0.173 0.827 41 H 0.197 0.803 42 H 0.194 0.806 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.865 -17.444 -10.525 20.737 hybrid contribution -0.733 2.249 0.778 2.490 sum 3.132 -15.195 -9.747 18.322 Atomic orbital electron populations 1.70166 1.06614 1.25103 1.58805 1.25662 0.96388 1.01187 1.03188 0.85094 0.77811 0.79275 0.77253 1.21661 1.23012 1.18666 1.19541 0.91278 0.83053 1.41865 0.88568 1.45487 1.01382 1.01108 1.86094 1.21477 0.85054 0.90013 0.97112 1.24177 0.99360 0.94330 0.82610 0.87033 1.24088 0.93943 1.00820 0.98144 1.23607 0.98256 0.83223 0.92112 0.84582 1.23200 0.78921 1.00641 1.00342 1.49191 1.10330 1.59270 1.14822 1.19807 0.85191 0.76391 0.84800 1.90633 1.17197 1.58645 1.81187 1.22246 1.01395 1.07247 0.87757 0.83687 1.23212 1.03414 0.93532 0.96763 1.20960 0.98590 0.92884 0.97840 0.86873 1.19565 0.94695 0.93551 0.94459 1.22290 0.97293 1.02119 0.97359 1.23181 0.98666 0.87667 0.96688 1.67717 1.10052 1.23356 1.21274 1.23119 0.91933 1.00186 0.91032 1.22207 1.02287 0.93341 1.01237 0.94768 0.98522 0.96505 0.90139 0.87973 0.88125 0.92519 0.89296 0.84351 0.82696 0.80323 0.80568 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.79 10.56 21.65 0.23 -57.56 16 2 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 3 Si 0.98 44.57 29.55 68.60 2.03 46.59 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.23 -11.86 10.38 84.03 0.87 -10.99 16 8 H 0.10 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.62 -28.91 3.03 -648.53 -1.96 -30.88 16 10 C 0.19 9.35 4.76 87.16 0.42 9.77 16 11 C 0.10 3.77 5.24 46.93 0.25 4.01 16 12 H 0.11 4.27 8.06 -2.38 -0.02 4.25 16 13 C -0.13 -4.00 6.81 33.48 0.23 -3.78 16 14 C 0.13 4.46 5.52 46.94 0.26 4.72 16 15 H 0.14 3.75 8.14 -2.38 -0.02 3.73 16 16 C 0.09 2.78 5.83 87.16 0.51 3.29 16 17 N -0.60 -21.11 2.95 -768.40 -2.26 -23.38 16 18 C 0.55 19.17 7.68 87.66 0.67 19.85 16 19 O -0.59 -25.10 16.60 -3.04 -0.05 -25.15 16 20 C -0.17 -4.16 5.25 -11.54 -0.06 -4.22 16 21 H 0.15 2.95 7.80 -2.39 -0.02 2.93 16 22 C -0.13 -2.94 9.59 30.59 0.29 -2.65 16 23 C -0.08 -1.91 5.59 -11.54 -0.06 -1.97 16 24 H 0.11 2.98 7.67 -2.38 -0.02 2.96 16 25 C -0.01 -0.28 5.64 -19.67 -0.11 -0.39 16 26 C -0.17 -2.77 9.39 22.36 0.21 -2.56 16 27 C 0.09 1.54 11.18 84.68 0.95 2.49 16 28 N -0.51 -10.22 10.36 -195.84 -2.03 -12.25 16 29 C 0.09 1.62 11.18 84.68 0.95 2.57 16 30 C -0.17 -3.11 9.84 22.36 0.22 -2.89 16 31 H 0.24 14.51 8.31 -92.71 -0.77 13.73 16 32 H 0.00 -0.20 7.68 -2.39 -0.02 -0.22 16 33 H 0.02 0.94 7.46 -2.39 -0.02 0.92 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.10 2.14 8.08 -2.39 -0.02 2.13 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.14 2.19 6.25 -2.39 -0.01 2.17 16 40 H 0.16 1.84 6.16 -2.91 -0.02 1.82 16 41 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 43 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -73.79 353.92 3.01 -70.77 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 1.02 Total: 18.10 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 6.05 Total: 13.75 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -6.03 Total: -124.07 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.05 Total: -25.15 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -73.79 3.01 -70.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032410613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.554 kcal (2) G-P(sol) polarization free energy of solvation -73.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds