Wall clock time and date at job start Fri Apr 10 2020 22:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48502 * 109.47338 * 269.99876 * 3 2 1 5 5 H 1.48499 * 109.46913 * 30.00121 * 3 2 1 6 6 H 1.48503 * 109.46914 * 149.99754 * 3 2 1 7 7 C 1.38807 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00305 * 359.97438 * 7 2 1 10 10 C 1.47359 * 126.78879 * 0.28748 * 9 7 2 11 11 C 1.56012 * 105.15225 * 182.05753 * 10 9 7 12 12 H 1.08998 * 116.90136 * 159.04080 * 11 10 9 13 13 C 1.57435 * 99.68916 * 32.49733 * 11 10 9 14 14 C 1.49291 * 126.94756 * 179.97438 * 9 7 2 15 15 H 1.09000 * 116.78342 * 16.28471 * 14 9 7 16 16 C 1.56026 * 104.09172 * 246.68008 * 14 9 7 17 17 N 1.47866 * 105.10286 * 288.76966 * 16 14 9 18 18 C 1.34783 * 126.94285 * 181.98318 * 17 16 14 19 19 O 1.21516 * 119.99802 * 184.62604 * 18 17 16 20 20 C 1.48143 * 119.99811 * 4.62044 * 18 17 16 21 21 C 1.39843 * 120.92598 * 352.63029 * 20 18 17 22 22 C 1.38125 * 119.00078 * 179.72564 * 21 20 18 23 23 N 1.31827 * 120.90090 * 0.25203 * 22 21 20 24 24 C 1.31793 * 122.04866 * 0.02562 * 23 22 21 25 25 C 1.50699 * 119.55524 * 180.02562 * 24 23 22 26 26 C 1.52996 * 117.50489 * 163.74482 * 25 24 23 27 27 C 1.52997 * 117.50366 * 95.07983 * 25 24 23 28 28 C 1.38172 * 120.89775 * 0.02562 * 24 23 22 29 29 H 0.97000 * 119.99939 * 359.97438 * 1 2 3 30 30 H 1.09006 * 110.43183 * 63.06181 * 10 9 7 31 31 H 1.09000 * 110.24228 * 300.95703 * 10 9 7 32 32 H 1.09004 * 112.53412 * 191.98204 * 13 11 10 33 33 H 1.09002 * 112.39594 * 64.47325 * 13 11 10 34 34 H 1.08994 * 110.31404 * 169.86124 * 16 14 9 35 35 H 1.08995 * 110.40043 * 47.71696 * 16 14 9 36 36 H 1.08000 * 120.49203 * 0.02562 * 21 20 18 37 37 H 1.07996 * 119.54708 * 180.27454 * 22 21 20 38 38 H 1.09004 * 115.54489 * 309.41697 * 25 24 23 39 39 H 1.09005 * 117.49510 * 359.97438 * 26 25 24 40 40 H 1.08996 * 117.50182 * 145.01603 * 26 25 24 41 41 H 1.08999 * 117.50208 * 214.97932 * 27 25 24 42 42 H 1.08996 * 117.49901 * 0.02562 * 27 25 24 43 43 H 1.08000 * 120.50078 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1375 -2.5624 -0.0036 11 6 -0.3647 -4.1048 0.0544 12 1 -1.3374 -4.4471 0.4077 13 6 0.8848 -4.5244 0.9154 14 6 1.9104 -3.7617 0.0018 15 1 2.9624 -3.8477 0.2738 16 6 1.5069 -4.3465 -1.3873 17 7 0.0503 -4.5842 -1.2969 18 6 -0.7435 -5.1201 -2.2452 19 8 -1.9442 -5.1816 -2.0690 20 6 -0.1521 -5.6341 -3.5025 21 6 1.2015 -5.4367 -3.7933 22 6 1.7127 -5.9379 -4.9745 23 7 0.9424 -6.5893 -5.8231 24 6 -0.3389 -6.7924 -5.5906 25 6 -1.1673 -7.5452 -6.5995 26 6 -2.5220 -8.0866 -6.1386 27 6 -1.3552 -9.0476 -6.3796 28 6 -0.9330 -6.3245 -4.4341 29 1 -0.4850 0.8401 0.0004 30 1 -0.5665 -2.1508 -0.9173 31 1 -0.5777 -2.0818 0.8701 32 1 1.0500 -5.6018 0.9145 33 1 0.8477 -4.1185 1.9264 34 1 2.0326 -5.2835 -1.5706 35 1 1.7248 -3.6298 -2.1791 36 1 1.8386 -4.9047 -3.1022 37 1 2.7578 -5.7944 -5.2059 38 1 -1.0896 -7.1930 -7.6282 39 1 -2.8140 -7.8986 -5.1054 40 1 -3.3355 -8.0908 -6.8640 41 1 -1.4016 -9.6837 -7.2635 42 1 -0.8800 -9.4915 -5.5049 43 1 -1.9834 -6.4950 -4.2499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032500920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:49 Heat of formation + Delta-G solvation = 109.067465 kcal Electronic energy + Delta-G solvation = -25988.269863 eV Core-core repulsion = 22422.995371 eV Total energy + Delta-G solvation = -3565.274492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89651 -39.83716 -37.88321 -37.07441 -33.94649 -32.78593 -31.49493 -30.87001 -29.10355 -28.70381 -25.69893 -24.92092 -24.43223 -23.38074 -22.49813 -21.47529 -20.59972 -19.88771 -18.99126 -17.58071 -16.80949 -16.61371 -16.02562 -15.71393 -15.31567 -15.11401 -14.90570 -14.46820 -14.28065 -13.95784 -13.71974 -13.45570 -13.19677 -12.58723 -12.15641 -12.02999 -11.83625 -11.79042 -11.50785 -11.35512 -11.11803 -10.94364 -10.91515 -10.76674 -10.68725 -10.64512 -10.30986 -10.15435 -9.96355 -9.82227 -9.71667 -9.37068 -8.97338 -8.76012 -8.16156 -7.00743 -5.83334 -3.18949 0.77717 1.01912 3.03028 3.15320 3.33387 3.38090 3.40952 3.50570 3.84604 4.04736 4.35565 4.47976 4.59102 4.69983 4.77379 4.90670 4.96216 4.97402 5.06492 5.14047 5.25313 5.39872 5.41875 5.47754 5.51760 5.61447 5.66185 5.68451 5.73234 5.75610 5.88138 5.93743 5.99040 6.07055 6.16277 6.30027 6.35821 6.48449 6.54054 6.58697 7.35244 7.40530 7.65474 7.87284 7.88784 8.03441 8.37442 9.03627 9.64158 10.31659 11.28344 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.003406 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.340914 B = 8218.055009 C = 8538.048837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.082 0.918 9 N -0.595 5.595 10 C 0.174 3.826 11 C 0.099 3.901 12 H 0.116 0.884 13 C -0.152 4.152 14 C 0.140 3.860 15 H 0.110 0.890 16 C 0.071 3.929 17 N -0.595 5.595 18 C 0.568 3.432 19 O -0.544 6.544 20 C -0.073 4.073 21 C -0.172 4.172 22 C 0.097 3.903 23 N -0.470 5.470 24 C 0.147 3.853 25 C -0.105 4.105 26 C -0.174 4.174 27 C -0.162 4.162 28 C -0.116 4.116 29 H 0.255 0.745 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.383 -15.660 -7.567 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.319 5.319 10 C 0.049 3.951 11 C -0.003 4.003 12 H 0.134 0.866 13 C -0.192 4.192 14 C 0.031 3.969 15 H 0.128 0.872 16 C -0.054 4.054 17 N -0.327 5.327 18 C 0.356 3.644 19 O -0.423 6.423 20 C -0.084 4.084 21 C -0.192 4.192 22 C -0.060 4.060 23 N -0.179 5.179 24 C 0.010 3.990 25 C -0.124 4.124 26 C -0.212 4.212 27 C -0.200 4.200 28 C -0.136 4.136 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.187 0.813 37 H 0.179 0.821 38 H 0.140 0.860 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.002 -15.720 -8.273 17.792 hybrid contribution 0.113 1.383 0.578 1.504 sum 1.115 -14.337 -7.694 16.309 Atomic orbital electron populations 1.69915 1.04979 1.25457 1.56065 1.24839 0.95696 0.97818 1.01779 0.86106 0.78576 0.83343 0.77605 1.21556 1.21644 1.20573 1.19043 0.90443 0.81978 1.44885 0.90044 1.45121 1.01335 0.99287 1.86201 1.21840 0.84768 0.86903 1.01564 1.24510 0.97981 0.97812 0.80025 0.86628 1.24247 0.96591 0.98990 0.99342 1.23232 0.96787 0.86352 0.90519 0.87238 1.23748 0.80225 0.98932 1.02457 1.49087 1.09351 1.58724 1.15586 1.17762 0.85823 0.78310 0.82482 1.90740 1.13950 1.58393 1.79239 1.20415 0.94263 0.98345 0.95336 1.23667 0.95935 0.99907 0.99681 1.22751 0.99846 0.93574 0.89806 1.67207 1.05283 1.13092 1.32319 1.20241 0.90084 0.95867 0.92800 1.20727 0.97554 0.95692 0.98442 1.23147 0.91407 1.03313 1.03293 1.22973 1.01988 0.91361 1.03637 1.22065 1.01648 0.96777 0.93160 0.93483 0.93419 0.92335 0.91519 0.89499 0.91832 0.90095 0.81289 0.82086 0.86004 0.88006 0.87893 0.88142 0.88726 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.26 10.53 55.49 0.58 -25.67 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 3 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.24 -6.06 10.37 -15.06 -0.16 -6.21 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -13.72 3.01 -156.73 -0.47 -14.19 16 10 C 0.17 4.07 4.74 -1.96 -0.01 4.06 16 11 C 0.10 1.85 5.25 -62.37 -0.33 1.52 16 12 H 0.12 2.10 8.08 -51.93 -0.42 1.68 16 13 C -0.15 -2.43 6.84 -22.09 -0.15 -2.58 16 14 C 0.14 2.42 5.53 -62.53 -0.35 2.08 16 15 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 16 C 0.07 1.13 4.26 -1.67 -0.01 1.12 16 17 N -0.60 -10.72 2.95 -157.57 -0.46 -11.19 16 18 C 0.57 10.62 7.87 -12.19 -0.10 10.52 16 19 O -0.54 -11.63 16.84 5.35 0.09 -11.54 16 20 C -0.07 -1.15 5.91 -104.64 -0.62 -1.77 16 21 C -0.17 -2.35 8.82 -39.02 -0.34 -2.70 16 22 C 0.10 1.21 11.17 -17.60 -0.20 1.02 16 23 N -0.47 -6.47 10.25 -9.53 -0.10 -6.56 16 24 C 0.15 1.97 6.46 -82.63 -0.53 1.44 16 25 C -0.11 -1.11 6.21 -91.78 -0.57 -1.68 16 26 C -0.17 -1.55 9.80 -26.70 -0.26 -1.81 16 27 C -0.16 -1.42 10.24 -26.69 -0.27 -1.70 16 28 C -0.12 -1.69 8.93 -39.02 -0.35 -2.04 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 1.30 7.68 -51.93 -0.40 0.90 16 31 H 0.06 1.51 7.42 -51.93 -0.39 1.12 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.06 0.80 6.77 -51.93 -0.35 0.45 16 35 H 0.08 1.39 6.98 -51.93 -0.36 1.03 16 36 H 0.17 2.15 3.06 -52.49 -0.16 1.99 16 37 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.10 0.96 6.38 -51.93 -0.33 0.63 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.15 2.05 5.95 -52.49 -0.31 1.74 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -31.69 345.84 -10.15 -41.85 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.65 Total: 4.78 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -4.33 Total: 1.06 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.45 Total: -57.61 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.69 -10.15 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032500920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.916 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds