Wall clock time and date at job start Fri Apr 10 2020 22:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48502 * 109.47338 * 269.99876 * 3 2 1 5 5 H 1.48499 * 109.46913 * 30.00121 * 3 2 1 6 6 H 1.48503 * 109.46914 * 149.99754 * 3 2 1 7 7 C 1.38807 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00305 * 359.97438 * 7 2 1 10 10 C 1.47359 * 126.78879 * 0.28748 * 9 7 2 11 11 C 1.56012 * 105.15225 * 182.05753 * 10 9 7 12 12 H 1.08998 * 116.90136 * 159.04080 * 11 10 9 13 13 C 1.57435 * 99.68916 * 32.49733 * 11 10 9 14 14 C 1.49291 * 126.94756 * 179.97438 * 9 7 2 15 15 H 1.09000 * 116.78342 * 16.28471 * 14 9 7 16 16 C 1.56026 * 104.09172 * 246.68008 * 14 9 7 17 17 N 1.47866 * 105.10286 * 288.76966 * 16 14 9 18 18 C 1.34783 * 126.94285 * 181.98318 * 17 16 14 19 19 O 1.21516 * 119.99802 * 184.62604 * 18 17 16 20 20 C 1.48143 * 119.99811 * 4.62044 * 18 17 16 21 21 C 1.39843 * 120.92598 * 352.63029 * 20 18 17 22 22 C 1.38125 * 119.00078 * 179.72564 * 21 20 18 23 23 N 1.31827 * 120.90090 * 0.25203 * 22 21 20 24 24 C 1.31793 * 122.04866 * 0.02562 * 23 22 21 25 25 C 1.50699 * 119.55524 * 180.02562 * 24 23 22 26 26 C 1.52996 * 117.50489 * 163.74482 * 25 24 23 27 27 C 1.52997 * 117.50366 * 95.07983 * 25 24 23 28 28 C 1.38172 * 120.89775 * 0.02562 * 24 23 22 29 29 H 0.97000 * 119.99939 * 359.97438 * 1 2 3 30 30 H 1.09006 * 110.43183 * 63.06181 * 10 9 7 31 31 H 1.09000 * 110.24228 * 300.95703 * 10 9 7 32 32 H 1.09004 * 112.53412 * 191.98204 * 13 11 10 33 33 H 1.09002 * 112.39594 * 64.47325 * 13 11 10 34 34 H 1.08994 * 110.31404 * 169.86124 * 16 14 9 35 35 H 1.08995 * 110.40043 * 47.71696 * 16 14 9 36 36 H 1.08000 * 120.49203 * 0.02562 * 21 20 18 37 37 H 1.07996 * 119.54708 * 180.27454 * 22 21 20 38 38 H 1.09004 * 115.54489 * 309.41697 * 25 24 23 39 39 H 1.09005 * 117.49510 * 359.97438 * 26 25 24 40 40 H 1.08996 * 117.50182 * 145.01603 * 26 25 24 41 41 H 1.08999 * 117.50208 * 214.97932 * 27 25 24 42 42 H 1.08996 * 117.49901 * 0.02562 * 27 25 24 43 43 H 1.08000 * 120.50078 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1375 -2.5624 -0.0036 11 6 -0.3647 -4.1048 0.0544 12 1 -1.3374 -4.4471 0.4077 13 6 0.8848 -4.5244 0.9154 14 6 1.9104 -3.7617 0.0018 15 1 2.9624 -3.8477 0.2738 16 6 1.5069 -4.3465 -1.3873 17 7 0.0503 -4.5842 -1.2969 18 6 -0.7435 -5.1201 -2.2452 19 8 -1.9442 -5.1816 -2.0690 20 6 -0.1521 -5.6341 -3.5025 21 6 1.2015 -5.4367 -3.7933 22 6 1.7127 -5.9379 -4.9745 23 7 0.9424 -6.5893 -5.8231 24 6 -0.3389 -6.7924 -5.5906 25 6 -1.1673 -7.5452 -6.5995 26 6 -2.5220 -8.0866 -6.1386 27 6 -1.3552 -9.0476 -6.3796 28 6 -0.9330 -6.3245 -4.4341 29 1 -0.4850 0.8401 0.0004 30 1 -0.5665 -2.1508 -0.9173 31 1 -0.5777 -2.0818 0.8701 32 1 1.0500 -5.6018 0.9145 33 1 0.8477 -4.1185 1.9264 34 1 2.0326 -5.2835 -1.5706 35 1 1.7248 -3.6298 -2.1791 36 1 1.8386 -4.9047 -3.1022 37 1 2.7578 -5.7944 -5.2059 38 1 -1.0896 -7.1930 -7.6282 39 1 -2.8140 -7.8986 -5.1054 40 1 -3.3355 -8.0908 -6.8640 41 1 -1.4016 -9.6837 -7.2635 42 1 -0.8800 -9.4915 -5.5049 43 1 -1.9834 -6.4950 -4.2499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032500920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:49 Heat of formation + Delta-G solvation = 90.185060 kcal Electronic energy + Delta-G solvation = -25989.088666 eV Core-core repulsion = 22422.995371 eV Total energy + Delta-G solvation = -3566.093294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16228 -41.10171 -39.35317 -37.91179 -35.64487 -34.18525 -32.98377 -31.99977 -30.62328 -30.36356 -27.19983 -26.45097 -25.44764 -24.83263 -23.30126 -22.58003 -21.86959 -21.37204 -20.47770 -19.06087 -18.20420 -17.93562 -17.26572 -17.08737 -16.63178 -16.37544 -16.09742 -15.86455 -15.54167 -15.29521 -14.98881 -14.90412 -14.55103 -13.92453 -13.65287 -13.47913 -13.16250 -13.14838 -12.88851 -12.72169 -12.67963 -12.35665 -12.23722 -12.16591 -12.02151 -11.84992 -11.69187 -11.55695 -11.41106 -11.37521 -10.97334 -10.79031 -10.45595 -9.95839 -9.66365 -8.92245 -7.85229 -5.21478 -0.39318 -0.00788 1.47523 1.48359 1.57123 1.69463 1.78889 2.47997 2.61225 2.86746 3.14332 3.22599 3.32471 3.42014 3.67824 3.72870 3.76357 3.85117 3.92920 3.97783 4.03777 4.13137 4.14881 4.20805 4.41073 4.46829 4.53207 4.64744 4.74168 4.76942 4.80943 4.84923 4.92662 4.99395 5.04875 5.11519 5.15971 5.20272 5.22289 5.44356 5.48309 5.55282 5.65052 6.08996 6.46109 6.85031 6.92239 7.02383 7.70592 8.39543 9.25651 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.003406 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.340914 B = 8218.055009 C = 8538.048837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.072 4.072 3 Si 0.976 3.024 4 H -0.291 1.291 5 H -0.304 1.304 6 H -0.260 1.260 7 C -0.228 4.228 8 H 0.100 0.900 9 N -0.614 5.614 10 C 0.188 3.812 11 C 0.099 3.901 12 H 0.116 0.884 13 C -0.129 4.129 14 C 0.136 3.864 15 H 0.145 0.855 16 C 0.077 3.923 17 N -0.597 5.597 18 C 0.562 3.438 19 O -0.584 6.584 20 C -0.092 4.092 21 C -0.170 4.170 22 C 0.104 3.896 23 N -0.480 5.480 24 C 0.148 3.852 25 C -0.124 4.124 26 C -0.171 4.171 27 C -0.149 4.149 28 C -0.128 4.128 29 H 0.243 0.757 30 H -0.006 1.006 31 H 0.020 0.980 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.181 0.819 37 H 0.199 0.801 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 -18.048 -8.488 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.265 4.265 3 Si 0.805 3.195 4 H -0.219 1.219 5 H -0.231 1.231 6 H -0.184 1.184 7 C -0.357 4.357 8 H 0.118 0.882 9 N -0.339 5.339 10 C 0.062 3.938 11 C -0.003 4.003 12 H 0.133 0.867 13 C -0.168 4.168 14 C 0.030 3.970 15 H 0.162 0.838 16 C -0.047 4.047 17 N -0.329 5.329 18 C 0.352 3.648 19 O -0.465 6.465 20 C -0.103 4.103 21 C -0.189 4.189 22 C -0.053 4.053 23 N -0.189 5.189 24 C 0.011 3.989 25 C -0.143 4.143 26 C -0.208 4.208 27 C -0.187 4.187 28 C -0.148 4.148 29 H 0.052 0.948 30 H 0.012 0.988 31 H 0.039 0.961 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.198 0.802 37 H 0.216 0.784 38 H 0.149 0.851 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.106 0.894 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.932 -18.159 -9.194 20.730 hybrid contribution -0.761 2.066 0.825 2.351 sum 3.171 -16.093 -8.369 18.414 Atomic orbital electron populations 1.70165 1.06665 1.25108 1.58783 1.25674 0.96357 1.01269 1.03168 0.85101 0.77908 0.79302 0.77157 1.21880 1.23113 1.18415 1.19564 0.91402 0.82932 1.41819 0.88233 1.45372 1.01318 1.01198 1.85987 1.21401 0.85259 0.89911 0.97248 1.24351 0.99803 0.94371 0.81818 0.86663 1.24158 0.93431 1.01003 0.98216 1.23691 0.98693 0.83043 0.91585 0.83778 1.23753 0.79121 1.00838 1.00969 1.49149 1.10392 1.58222 1.15110 1.18277 0.85473 0.77847 0.83241 1.90705 1.15669 1.60070 1.80101 1.20312 0.95624 0.99837 0.94507 1.23754 0.94838 0.99864 1.00481 1.23350 1.01271 0.91937 0.88724 1.67336 1.05430 1.13480 1.32683 1.20611 0.90317 0.95281 0.92678 1.20846 0.98401 0.96859 0.98165 1.23214 0.91556 1.02845 1.03188 1.23056 1.01010 0.90396 1.04217 1.22129 1.01584 0.97358 0.93764 0.94799 0.98798 0.96144 0.87689 0.89700 0.86982 0.91435 0.80247 0.78424 0.85122 0.89122 0.85968 0.85917 0.89370 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.85 10.53 21.65 0.23 -57.62 16 2 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 3 Si 0.98 44.48 29.55 68.60 2.03 46.51 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.23 -11.66 10.37 84.03 0.87 -10.79 16 8 H 0.10 4.62 7.83 -2.91 -0.02 4.60 16 9 N -0.61 -28.22 3.01 -649.76 -1.95 -30.17 16 10 C 0.19 9.21 4.74 87.26 0.41 9.63 16 11 C 0.10 3.75 5.25 47.06 0.25 4.00 16 12 H 0.12 4.32 8.08 -2.39 -0.02 4.30 16 13 C -0.13 -3.77 6.84 33.60 0.23 -3.54 16 14 C 0.14 4.31 5.53 46.94 0.26 4.57 16 15 H 0.14 3.62 8.14 -2.39 -0.02 3.60 16 16 C 0.08 2.22 4.26 87.17 0.37 2.59 16 17 N -0.60 -21.18 2.95 -770.72 -2.27 -23.45 16 18 C 0.56 21.23 7.87 86.87 0.68 21.91 16 19 O -0.58 -25.97 16.84 -3.77 -0.06 -26.03 16 20 C -0.09 -2.87 5.91 -19.88 -0.12 -2.99 16 21 C -0.17 -4.25 8.82 22.63 0.20 -4.05 16 22 C 0.10 2.28 11.17 84.67 0.95 3.22 16 23 N -0.48 -12.11 10.25 -184.05 -1.89 -14.00 16 24 C 0.15 3.78 6.46 42.55 0.27 4.05 16 25 C -0.12 -2.42 6.21 -11.54 -0.07 -2.50 16 26 C -0.17 -2.80 9.80 30.62 0.30 -2.50 16 27 C -0.15 -2.30 10.24 30.62 0.31 -1.99 16 28 C -0.13 -3.71 8.93 22.63 0.20 -3.51 16 29 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 30 H -0.01 -0.36 7.68 -2.38 -0.02 -0.38 16 31 H 0.02 1.13 7.42 -2.39 -0.02 1.12 16 32 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.11 2.27 6.77 -2.39 -0.02 2.25 16 35 H 0.07 2.19 6.98 -2.39 -0.02 2.18 16 36 H 0.18 3.99 3.06 -2.91 -0.01 3.98 16 37 H 0.20 2.76 8.06 -2.91 -0.02 2.73 16 38 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.09 1.70 6.38 -2.38 -0.02 1.68 16 40 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.14 4.12 5.95 -2.91 -0.02 4.10 16 Total: -1.00 -73.82 345.84 2.71 -71.11 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.04 Total: 19.06 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 5.59 Total: 14.60 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -5.88 Total: -125.25 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.06 Total: -26.03 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -73.82 2.71 -71.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032500920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.296 kcal (2) G-P(sol) polarization free energy of solvation -73.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds