Wall clock time and date at job start Fri Apr 10 2020 22:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99668 * 2 1 4 4 H 1.48497 * 109.47152 * 240.00053 * 3 2 1 5 5 H 1.48502 * 109.47325 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47196 * 120.00097 * 3 2 1 7 7 C 1.38804 * 120.00474 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.48292 * 126.99398 * 359.97438 * 9 7 2 11 11 C 1.56022 * 105.05637 * 182.01651 * 10 9 7 12 12 H 1.08997 * 116.89252 * 159.18902 * 11 10 9 13 13 C 1.57083 * 99.60616 * 32.78921 * 11 10 9 14 14 C 1.49292 * 126.95048 * 179.97438 * 9 7 2 15 15 H 1.09005 * 116.78137 * 16.31255 * 14 9 7 16 16 C 1.56075 * 104.03099 * 246.66187 * 14 9 7 17 17 N 1.47870 * 105.15956 * 288.65474 * 16 14 9 18 18 C 1.34772 * 126.94215 * 182.06377 * 17 16 14 19 19 O 1.21284 * 119.99792 * 175.11356 * 18 17 16 20 20 C 1.50695 * 120.00109 * 355.11531 * 18 17 16 21 21 C 1.50695 * 115.55304 * 280.16771 * 20 18 17 22 22 C 1.38675 * 120.41735 * 330.08803 * 21 20 18 23 23 C 1.38626 * 118.42349 * 179.97438 * 22 21 20 24 24 C 1.38233 * 119.15920 * 0.02562 * 23 22 21 25 25 N 1.31851 * 120.76099 * 359.97438 * 24 23 22 26 26 C 1.31885 * 121.72886 * 359.70056 * 25 24 23 27 27 C 1.53000 * 117.49982 * 134.46347 * 20 18 17 28 28 C 1.53000 * 117.50052 * 65.84021 * 20 18 17 29 29 H 0.97003 * 120.00470 * 359.97438 * 1 2 3 30 30 H 1.09006 * 110.35454 * 63.12051 * 10 9 7 31 31 H 1.08999 * 110.32410 * 300.90045 * 10 9 7 32 32 H 1.08997 * 112.36469 * 64.27339 * 13 11 10 33 33 H 1.08996 * 112.36760 * 191.62521 * 13 11 10 34 34 H 1.08992 * 110.21904 * 169.76056 * 16 14 9 35 35 H 1.09000 * 110.43768 * 47.65693 * 16 14 9 36 36 H 1.08008 * 120.78995 * 359.97438 * 22 21 20 37 37 H 1.07997 * 120.42158 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.61578 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.61945 * 180.30998 * 26 25 24 40 40 H 1.09002 * 117.50002 * 359.97438 * 27 20 18 41 41 H 1.08998 * 117.50526 * 145.01648 * 27 20 18 42 42 H 1.09000 * 117.50002 * 214.97583 * 28 20 18 43 43 H 1.09005 * 117.49665 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1462 -2.5687 0.0005 11 6 -0.3649 -4.1126 0.0530 12 1 -1.3349 -4.4613 0.4072 13 6 0.8845 -4.5254 0.9109 14 6 1.9104 -3.7617 -0.0016 15 1 2.9623 -3.8480 0.2709 16 6 1.5055 -4.3441 -1.3919 17 7 0.0493 -4.5845 -1.3012 18 6 -0.7437 -5.1209 -2.2498 19 8 -1.9114 -5.3435 -2.0092 20 6 -0.1795 -5.4440 -3.6093 21 6 -0.0428 -4.2754 -4.5508 22 6 -0.9152 -3.2008 -4.4674 23 6 -0.7514 -2.1475 -5.3538 24 6 0.2686 -2.2034 -6.2850 25 7 1.0797 -3.2417 -6.3354 26 6 0.9574 -4.2583 -5.5041 27 6 -0.5336 -6.8031 -4.2163 28 6 0.8800 -6.5448 -3.6910 29 1 -0.4851 0.8400 0.0004 30 1 -0.5795 -2.1559 -0.9105 31 1 -0.5852 -2.0942 0.8781 32 1 0.8460 -4.1195 1.9218 33 1 1.0507 -5.6026 0.9101 34 1 2.0329 -5.2800 -1.5762 35 1 1.7221 -3.6263 -2.1830 36 1 -1.7037 -3.1847 -3.7294 37 1 -1.4129 -1.2946 -5.3177 38 1 0.4026 -1.3871 -6.9794 39 1 1.6439 -5.0892 -5.5724 40 1 -1.1743 -7.4637 -3.6321 41 1 -0.6680 -6.8522 -5.2968 42 1 1.6757 -6.4239 -4.4261 43 1 1.1686 -7.0356 -2.7615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032581502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:52 Heat of formation + Delta-G solvation = 94.664202 kcal Electronic energy + Delta-G solvation = -27056.043152 eV Core-core repulsion = 23490.144088 eV Total energy + Delta-G solvation = -3565.899064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.79423 -39.75618 -38.29983 -36.36986 -33.61226 -32.32725 -31.49498 -30.77548 -29.12420 -28.57463 -25.43672 -25.08849 -23.63991 -23.47406 -22.53464 -21.99556 -20.11798 -19.71020 -18.44331 -17.53785 -17.04275 -16.39812 -16.03535 -15.74569 -15.47841 -14.84348 -14.47896 -14.35059 -14.03215 -13.79387 -13.46282 -13.12532 -12.95216 -12.75788 -12.27025 -12.01190 -11.93591 -11.67904 -11.53820 -11.34409 -11.18523 -10.96212 -10.90741 -10.80611 -10.65652 -10.61622 -10.31158 -10.12330 -9.75133 -9.64873 -9.56873 -9.21742 -8.78252 -8.71296 -8.05790 -6.96124 -5.79916 -3.14047 1.14153 1.39931 2.85275 3.20987 3.35444 3.40042 3.41256 3.58615 4.02978 4.30431 4.39152 4.56385 4.60321 4.77488 4.83952 5.01791 5.05828 5.10717 5.16008 5.30448 5.34895 5.46772 5.47251 5.53198 5.60014 5.69588 5.71119 5.75846 5.83458 5.90775 5.97365 6.15395 6.24041 6.26542 6.35172 6.37836 6.46977 6.55519 6.65650 6.75729 7.37246 7.42263 7.66636 8.01601 8.02099 8.06257 8.49920 9.06401 9.67914 10.36710 11.32320 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.005912 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.095714 B = 4735.173129 C = 6075.625836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.596 5.596 10 C 0.177 3.823 11 C 0.096 3.904 12 H 0.114 0.886 13 C -0.151 4.151 14 C 0.140 3.860 15 H 0.106 0.894 16 C 0.088 3.912 17 N -0.596 5.596 18 C 0.566 3.434 19 O -0.551 6.551 20 C -0.108 4.108 21 C -0.086 4.086 22 C -0.055 4.055 23 C -0.160 4.160 24 C 0.093 3.907 25 N -0.483 5.483 26 C 0.099 3.901 27 C -0.136 4.136 28 C -0.159 4.159 29 H 0.254 0.746 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -11.465 -7.508 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.052 3.948 11 C -0.007 4.007 12 H 0.131 0.869 13 C -0.191 4.191 14 C 0.031 3.969 15 H 0.124 0.876 16 C -0.037 4.037 17 N -0.328 5.328 18 C 0.353 3.647 19 O -0.429 6.429 20 C -0.112 4.112 21 C -0.089 4.089 22 C -0.081 4.081 23 C -0.180 4.180 24 C -0.064 4.064 25 N -0.191 5.191 26 C -0.058 4.058 27 C -0.173 4.173 28 C -0.196 4.196 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.268 -11.304 -8.077 13.951 hybrid contribution -0.273 1.158 0.608 1.337 sum 0.995 -10.146 -7.468 12.637 Atomic orbital electron populations 1.69892 1.04913 1.25390 1.56439 1.24786 0.95669 0.97635 1.02014 0.86221 0.78503 0.83229 0.77926 1.21172 1.21596 1.21080 1.18987 0.90343 0.82076 1.44462 0.90263 1.45295 1.01203 0.99220 1.86291 1.21958 0.84696 0.86906 1.01233 1.24403 0.97864 0.97756 0.80630 0.86851 1.24165 0.96748 0.98910 0.99269 1.23195 0.96534 0.86355 0.90809 0.87590 1.23294 0.79661 0.98927 1.01858 1.49127 1.09625 1.59064 1.14980 1.18783 0.85201 0.77134 0.83546 1.90669 1.16605 1.54760 1.80909 1.19937 1.06901 0.90085 0.94229 1.19653 0.97322 0.94905 0.96995 1.21485 0.97521 0.92106 0.96964 1.22141 0.99992 0.99400 0.96470 1.22727 0.90980 0.95793 0.96898 1.67684 1.26102 1.01228 1.24090 1.22523 0.95568 0.96615 0.91099 1.23069 0.97964 0.94970 1.01297 1.23193 0.92723 0.99823 1.03835 0.93568 0.93567 0.92557 0.89738 0.91677 0.92796 0.91231 0.84884 0.84594 0.82790 0.82937 0.87641 0.87834 0.87500 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.34 10.57 55.49 0.59 -25.75 16 2 C 0.00 -0.12 5.49 -17.44 -0.10 -0.21 16 3 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.07 10.38 -15.06 -0.16 -6.23 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.07 3.03 -155.95 -0.47 -14.54 16 10 C 0.18 4.15 4.78 -1.44 -0.01 4.15 16 11 C 0.10 1.81 5.25 -62.56 -0.33 1.49 16 12 H 0.11 2.09 8.04 -51.93 -0.42 1.68 16 13 C -0.15 -2.50 6.80 -22.29 -0.15 -2.65 16 14 C 0.14 2.55 5.53 -62.51 -0.35 2.20 16 15 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 16 C 0.09 1.49 5.72 -1.64 -0.01 1.48 16 17 N -0.60 -10.73 2.95 -156.76 -0.46 -11.19 16 18 C 0.57 10.15 5.96 -10.99 -0.07 10.08 16 19 O -0.55 -11.46 17.34 5.55 0.10 -11.36 16 20 C -0.11 -1.55 1.76 -156.82 -0.28 -1.82 16 21 C -0.09 -1.30 5.49 -104.48 -0.57 -1.88 16 22 C -0.05 -0.90 9.44 -39.28 -0.37 -1.27 16 23 C -0.16 -2.35 10.11 -39.44 -0.40 -2.74 16 24 C 0.09 1.30 11.18 -17.55 -0.20 1.10 16 25 N -0.48 -7.25 10.36 -13.25 -0.14 -7.39 16 26 C 0.10 1.38 10.53 -17.55 -0.18 1.20 16 27 C -0.14 -1.56 9.83 -26.73 -0.26 -1.82 16 28 C -0.16 -1.71 8.63 -26.73 -0.23 -1.94 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.05 1.25 7.68 -51.93 -0.40 0.85 16 31 H 0.06 1.46 7.47 -51.93 -0.39 1.07 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.75 7.26 -51.93 -0.38 0.37 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.13 2.37 7.44 -52.48 -0.39 1.98 16 37 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.15 1.71 5.97 -52.49 -0.31 1.40 16 40 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.11 0.94 6.13 -51.93 -0.32 0.62 16 43 H 0.10 1.08 7.85 -51.93 -0.41 0.67 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -31.86 350.94 -9.72 -41.58 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.94 Total: 5.65 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -3.65 Total: 1.13 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.48 Total: -58.87 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.10 Total: -11.36 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.86 -9.72 -41.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032581502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.242 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds