Wall clock time and date at job start Fri Apr 10 2020 22:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99668 * 2 1 4 4 H 1.48497 * 109.47152 * 240.00053 * 3 2 1 5 5 H 1.48502 * 109.47325 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47196 * 120.00097 * 3 2 1 7 7 C 1.38804 * 120.00474 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.48292 * 126.99398 * 359.97438 * 9 7 2 11 11 C 1.56022 * 105.05637 * 182.01651 * 10 9 7 12 12 H 1.08997 * 116.89252 * 159.18902 * 11 10 9 13 13 C 1.57083 * 99.60616 * 32.78921 * 11 10 9 14 14 C 1.49292 * 126.95048 * 179.97438 * 9 7 2 15 15 H 1.09005 * 116.78137 * 16.31255 * 14 9 7 16 16 C 1.56075 * 104.03099 * 246.66187 * 14 9 7 17 17 N 1.47870 * 105.15956 * 288.65474 * 16 14 9 18 18 C 1.34772 * 126.94215 * 182.06377 * 17 16 14 19 19 O 1.21284 * 119.99792 * 175.11356 * 18 17 16 20 20 C 1.50695 * 120.00109 * 355.11531 * 18 17 16 21 21 C 1.50695 * 115.55304 * 280.16771 * 20 18 17 22 22 C 1.38675 * 120.41735 * 330.08803 * 21 20 18 23 23 C 1.38626 * 118.42349 * 179.97438 * 22 21 20 24 24 C 1.38233 * 119.15920 * 0.02562 * 23 22 21 25 25 N 1.31851 * 120.76099 * 359.97438 * 24 23 22 26 26 C 1.31885 * 121.72886 * 359.70056 * 25 24 23 27 27 C 1.53000 * 117.49982 * 134.46347 * 20 18 17 28 28 C 1.53000 * 117.50052 * 65.84021 * 20 18 17 29 29 H 0.97003 * 120.00470 * 359.97438 * 1 2 3 30 30 H 1.09006 * 110.35454 * 63.12051 * 10 9 7 31 31 H 1.08999 * 110.32410 * 300.90045 * 10 9 7 32 32 H 1.08997 * 112.36469 * 64.27339 * 13 11 10 33 33 H 1.08996 * 112.36760 * 191.62521 * 13 11 10 34 34 H 1.08992 * 110.21904 * 169.76056 * 16 14 9 35 35 H 1.09000 * 110.43768 * 47.65693 * 16 14 9 36 36 H 1.08008 * 120.78995 * 359.97438 * 22 21 20 37 37 H 1.07997 * 120.42158 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.61578 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.61945 * 180.30998 * 26 25 24 40 40 H 1.09002 * 117.50002 * 359.97438 * 27 20 18 41 41 H 1.08998 * 117.50526 * 145.01648 * 27 20 18 42 42 H 1.09000 * 117.50002 * 214.97583 * 28 20 18 43 43 H 1.09005 * 117.49665 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1462 -2.5687 0.0005 11 6 -0.3649 -4.1126 0.0530 12 1 -1.3349 -4.4613 0.4072 13 6 0.8845 -4.5254 0.9109 14 6 1.9104 -3.7617 -0.0016 15 1 2.9623 -3.8480 0.2709 16 6 1.5055 -4.3441 -1.3919 17 7 0.0493 -4.5845 -1.3012 18 6 -0.7437 -5.1209 -2.2498 19 8 -1.9114 -5.3435 -2.0092 20 6 -0.1795 -5.4440 -3.6093 21 6 -0.0428 -4.2754 -4.5508 22 6 -0.9152 -3.2008 -4.4674 23 6 -0.7514 -2.1475 -5.3538 24 6 0.2686 -2.2034 -6.2850 25 7 1.0797 -3.2417 -6.3354 26 6 0.9574 -4.2583 -5.5041 27 6 -0.5336 -6.8031 -4.2163 28 6 0.8800 -6.5448 -3.6910 29 1 -0.4851 0.8400 0.0004 30 1 -0.5795 -2.1559 -0.9105 31 1 -0.5852 -2.0942 0.8781 32 1 0.8460 -4.1195 1.9218 33 1 1.0507 -5.6026 0.9101 34 1 2.0329 -5.2800 -1.5762 35 1 1.7221 -3.6263 -2.1830 36 1 -1.7037 -3.1847 -3.7294 37 1 -1.4129 -1.2946 -5.3177 38 1 0.4026 -1.3871 -6.9794 39 1 1.6439 -5.0892 -5.5724 40 1 -1.1743 -7.4637 -3.6321 41 1 -0.6680 -6.8522 -5.2968 42 1 1.6757 -6.4239 -4.4261 43 1 1.1686 -7.0356 -2.7615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032581502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:52 Heat of formation + Delta-G solvation = 75.464707 kcal Electronic energy + Delta-G solvation = -27056.875704 eV Core-core repulsion = 23490.144088 eV Total energy + Delta-G solvation = -3566.731617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.05623 -41.09348 -39.66169 -37.57184 -35.44259 -33.48327 -33.22060 -31.85691 -30.79061 -30.25475 -26.99936 -26.52423 -25.07058 -24.68800 -23.69356 -23.13494 -21.55306 -21.27988 -19.95032 -18.92667 -18.38777 -17.87263 -17.46854 -17.07583 -16.86924 -16.22287 -15.87458 -15.73822 -15.49747 -15.12724 -14.84037 -14.60381 -14.11922 -14.06962 -13.80637 -13.54471 -13.41952 -13.11810 -12.98791 -12.86401 -12.70569 -12.40274 -12.37082 -12.19253 -12.12100 -12.03258 -11.87861 -11.72698 -11.54460 -11.03215 -10.77520 -10.73383 -10.41590 -9.83095 -9.57889 -8.91793 -7.85779 -5.20844 0.03938 0.20802 1.44510 1.46527 1.47862 1.52764 1.89908 2.46659 2.55111 2.95709 3.27100 3.29691 3.33066 3.49026 3.58077 3.70981 3.78604 3.85328 3.87818 3.93296 3.98498 4.02067 4.18253 4.23935 4.41541 4.54328 4.58731 4.66346 4.70745 4.81001 4.85846 4.92539 4.92575 5.00300 5.07453 5.11735 5.15201 5.22173 5.24869 5.42398 5.50731 5.62406 5.65087 6.07767 6.61632 6.90423 7.01024 7.09016 7.69455 8.40203 9.25195 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.005912 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.095714 B = 4735.173129 C = 6075.625836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.973 3.027 4 H -0.279 1.279 5 H -0.302 1.302 6 H -0.273 1.273 7 C -0.230 4.230 8 H 0.093 0.907 9 N -0.615 5.615 10 C 0.192 3.808 11 C 0.097 3.903 12 H 0.113 0.887 13 C -0.127 4.127 14 C 0.133 3.867 15 H 0.136 0.864 16 C 0.099 3.901 17 N -0.598 5.598 18 C 0.563 3.437 19 O -0.590 6.590 20 C -0.138 4.138 21 C -0.087 4.087 22 C -0.086 4.086 23 C -0.170 4.170 24 C 0.090 3.910 25 N -0.494 5.494 26 C 0.102 3.898 27 C -0.126 4.126 28 C -0.129 4.129 29 H 0.243 0.757 30 H -0.006 1.006 31 H 0.018 0.982 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.145 0.855 38 H 0.183 0.817 39 H 0.188 0.812 40 H 0.100 0.900 41 H 0.121 0.879 42 H 0.136 0.864 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.530 -14.044 -8.472 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.802 3.198 4 H -0.205 1.205 5 H -0.229 1.229 6 H -0.199 1.199 7 C -0.358 4.358 8 H 0.111 0.889 9 N -0.340 5.340 10 C 0.066 3.934 11 C -0.006 4.006 12 H 0.131 0.869 13 C -0.166 4.166 14 C 0.027 3.973 15 H 0.154 0.846 16 C -0.025 4.025 17 N -0.330 5.330 18 C 0.352 3.648 19 O -0.471 6.471 20 C -0.142 4.142 21 C -0.089 4.089 22 C -0.112 4.112 23 C -0.190 4.190 24 C -0.066 4.066 25 N -0.202 5.202 26 C -0.054 4.054 27 C -0.163 4.163 28 C -0.166 4.166 29 H 0.052 0.948 30 H 0.013 0.987 31 H 0.036 0.964 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.060 0.940 36 H 0.120 0.880 37 H 0.163 0.837 38 H 0.200 0.800 39 H 0.205 0.795 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.153 0.847 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.525 -13.927 -9.045 17.212 hybrid contribution -1.305 1.931 0.909 2.501 sum 3.220 -11.997 -8.136 14.849 Atomic orbital electron populations 1.70139 1.06479 1.25104 1.58711 1.25598 0.96362 1.00973 1.03168 0.85230 0.77096 0.79195 0.78304 1.20530 1.22869 1.19871 1.19456 0.91140 0.83188 1.42045 0.88923 1.45535 1.01329 1.00986 1.86108 1.21525 0.84916 0.90000 0.96970 1.24210 0.99513 0.94277 0.82631 0.86885 1.24059 0.93602 1.00931 0.98044 1.23635 0.98308 0.83354 0.92053 0.84648 1.23152 0.79136 1.00365 0.99859 1.49190 1.10312 1.58845 1.14614 1.19456 0.84639 0.76092 0.84602 1.90635 1.18331 1.56343 1.81793 1.19851 1.10981 0.91248 0.92071 1.19755 0.97091 0.94581 0.97479 1.21468 0.98059 0.94188 0.97504 1.22330 1.00765 0.99353 0.96540 1.23160 0.90203 0.96419 0.96850 1.67767 1.26285 1.01683 1.24459 1.22990 0.95229 0.97165 0.90061 1.23185 0.98789 0.92132 1.02194 1.23430 0.92569 0.95728 1.04861 0.94774 0.98741 0.96417 0.90085 0.87680 0.87972 0.93989 0.88047 0.83718 0.79966 0.79535 0.88121 0.86057 0.84655 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.97 10.57 21.65 0.23 -57.74 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 3 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.23 -12.15 10.38 84.03 0.87 -11.28 16 8 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.61 -29.32 3.03 -647.30 -1.96 -31.28 16 10 C 0.19 9.53 4.78 87.08 0.42 9.94 16 11 C 0.10 3.71 5.25 46.94 0.25 3.96 16 12 H 0.11 4.32 8.04 -2.39 -0.02 4.30 16 13 C -0.13 -3.88 6.80 33.47 0.23 -3.65 16 14 C 0.13 4.51 5.53 46.96 0.26 4.77 16 15 H 0.14 3.83 8.14 -2.38 -0.02 3.81 16 16 C 0.10 3.10 5.72 87.18 0.50 3.60 16 17 N -0.60 -21.16 2.95 -768.27 -2.26 -23.42 16 18 C 0.56 20.13 5.96 87.66 0.52 20.65 16 19 O -0.59 -25.31 17.34 -3.04 -0.05 -25.36 16 20 C -0.14 -3.72 1.76 -53.68 -0.09 -3.82 16 21 C -0.09 -2.55 5.49 -19.78 -0.11 -2.66 16 22 C -0.09 -2.97 9.44 22.47 0.21 -2.75 16 23 C -0.17 -5.16 10.11 22.36 0.23 -4.93 16 24 C 0.09 2.43 11.18 84.69 0.95 3.38 16 25 N -0.49 -13.82 10.36 -195.85 -2.03 -15.85 16 26 C 0.10 2.60 10.53 84.67 0.89 3.49 16 27 C -0.13 -2.52 9.83 30.59 0.30 -2.22 16 28 C -0.13 -2.18 8.63 30.59 0.26 -1.92 16 29 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 30 H -0.01 -0.33 7.68 -2.38 -0.02 -0.35 16 31 H 0.02 0.99 7.47 -2.39 -0.02 0.98 16 32 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.10 2.27 7.26 -2.39 -0.02 2.25 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 4.04 7.44 -2.91 -0.02 4.02 16 37 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.18 3.71 8.06 -2.91 -0.02 3.68 16 39 H 0.19 3.28 5.97 -2.91 -0.02 3.27 16 40 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.14 1.54 6.13 -2.39 -0.01 1.52 16 43 H 0.12 1.74 7.85 -2.38 -0.02 1.72 16 Total: -1.00 -75.15 350.94 3.12 -72.03 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 1.02 Total: 21.06 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.15 Total: 13.20 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -6.02 Total: -128.29 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.15 3.12 -72.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032581502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.494 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds