Wall clock time and date at job start Fri Apr 10 2020 22:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99990 * 2 1 4 4 H 1.48497 * 109.47495 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47246 * 300.00622 * 3 2 1 6 6 H 1.48501 * 109.46889 * 60.00355 * 3 2 1 7 7 C 1.38808 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99932 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.49949 * 126.74240 * 0.36396 * 9 7 2 11 11 C 1.56017 * 104.10296 * 182.13137 * 10 9 7 12 12 H 1.09004 * 116.25249 * 159.11731 * 11 10 9 13 13 C 1.57083 * 100.41683 * 32.48161 * 11 10 9 14 14 C 1.49295 * 126.94472 * 179.97438 * 9 7 2 15 15 H 1.08999 * 116.14834 * 16.71069 * 14 9 7 16 16 C 1.55998 * 104.31730 * 246.62171 * 14 9 7 17 17 N 1.47868 * 105.11207 * 289.11442 * 16 14 9 18 18 C 1.34777 * 126.94471 * 181.88125 * 17 16 14 19 19 O 1.21283 * 120.00463 * 179.68640 * 18 17 16 20 20 C 1.50700 * 119.99675 * 359.40762 * 18 17 16 21 21 H 1.09004 * 110.71699 * 300.97440 * 20 18 17 22 22 C 1.54419 * 110.81319 * 177.60174 * 20 18 17 23 23 C 1.51045 * 105.15405 * 215.61631 * 22 20 18 24 24 C 1.38631 * 131.52396 * 197.04315 * 23 22 20 25 25 C 1.38203 * 119.10001 * 180.02562 * 24 23 22 26 26 N 1.31891 * 120.71289 * 359.91489 * 25 24 23 27 27 C 1.31836 * 121.78474 * 0.03546 * 26 25 24 28 28 C 1.38335 * 120.75576 * 0.02562 * 27 26 25 29 29 C 1.51488 * 131.19014 * 180.13006 * 28 27 26 30 30 H 0.96996 * 120.00374 * 359.97438 * 1 2 3 31 31 H 1.08995 * 111.28237 * 63.31402 * 10 9 7 32 32 H 1.09004 * 110.31573 * 300.46912 * 10 9 7 33 33 H 1.09003 * 112.36430 * 64.07058 * 13 11 10 34 34 H 1.09001 * 112.36939 * 191.42217 * 13 11 10 35 35 H 1.08996 * 110.41180 * 170.15468 * 16 14 9 36 36 H 1.08998 * 110.20458 * 47.96696 * 16 14 9 37 37 H 1.09001 * 110.30504 * 334.53724 * 22 20 18 38 38 H 1.09001 * 110.30841 * 96.59339 * 22 20 18 39 39 H 1.07999 * 120.44748 * 359.97438 * 24 23 22 40 40 H 1.08004 * 119.64321 * 179.97438 * 25 24 23 41 41 H 1.07998 * 119.62112 * 180.02562 * 27 26 25 42 42 H 1.09001 * 110.48669 * 44.09907 * 29 28 27 43 43 H 1.09002 * 110.25148 * 281.87175 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1635 -2.5642 -0.0076 11 6 -0.3637 -4.1103 0.0522 12 1 -1.3346 -4.4575 0.4056 13 6 0.8844 -4.5253 0.9110 14 6 1.9104 -3.7617 -0.0016 15 1 2.9610 -3.8368 0.2789 16 6 1.5085 -4.3510 -1.3890 17 7 0.0508 -4.5829 -1.3017 18 6 -0.7425 -5.1183 -2.2507 19 8 -1.9292 -5.2569 -2.0419 20 6 -0.1561 -5.5390 -3.5736 21 1 0.3148 -4.6924 -4.0733 22 6 -1.2361 -6.1763 -4.4747 23 6 -0.5227 -7.2712 -5.2321 24 6 -0.8664 -7.9695 -6.3793 25 6 -0.0063 -8.9390 -6.8591 26 7 1.1283 -9.1994 -6.2392 27 6 1.4869 -8.5541 -5.1469 28 6 0.6762 -7.5715 -4.6076 29 6 0.8511 -6.6935 -3.3855 30 1 -0.4850 0.8400 0.0004 31 1 -0.6053 -2.1604 -0.9185 32 1 -0.6047 -2.0913 0.8698 33 1 0.8458 -4.1194 1.9219 34 1 1.0487 -5.6029 0.9103 35 1 2.0311 -5.2905 -1.5688 36 1 1.7311 -3.6355 -2.1806 37 1 -2.0365 -6.5971 -3.8660 38 1 -1.6374 -5.4354 -5.1662 39 1 -1.7942 -7.7593 -6.8906 40 1 -0.2656 -9.4886 -7.7520 41 1 2.4242 -8.7954 -4.6678 42 1 1.8680 -6.3038 -3.3380 43 1 0.6182 -7.2553 -2.4809 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032630018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:01 Heat of formation + Delta-G solvation = 60.467552 kcal Electronic energy + Delta-G solvation = -26060.193337 eV Core-core repulsion = 22492.811394 eV Total energy + Delta-G solvation = -3567.381942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07097 -39.98211 -38.17905 -36.16571 -33.64490 -32.19047 -31.58141 -30.18491 -29.02063 -28.54221 -27.80787 -25.28197 -24.57306 -23.31231 -21.89425 -21.78594 -20.24039 -19.82072 -18.48862 -17.44981 -16.84387 -16.60940 -16.15633 -15.84202 -15.53557 -15.00336 -14.51081 -14.29259 -13.94537 -13.84307 -13.60635 -13.25571 -13.08475 -12.83417 -12.65791 -12.15018 -11.92121 -11.73311 -11.64054 -11.45403 -11.36693 -11.32051 -11.03487 -10.91133 -10.81901 -10.63260 -10.32128 -10.08901 -9.75366 -9.65909 -9.55896 -9.44338 -9.05763 -8.77261 -8.07910 -6.98512 -5.81335 -3.15717 0.93279 1.08889 2.90784 3.26290 3.34053 3.39249 3.42337 3.60868 4.07927 4.19714 4.36542 4.37344 4.68946 4.75113 4.80591 4.91368 4.98337 5.12681 5.21084 5.26509 5.30919 5.34140 5.51142 5.53345 5.55983 5.60523 5.67679 5.71963 5.77264 5.86902 5.88994 6.00100 6.11681 6.20114 6.23562 6.35298 6.43315 6.51663 6.53421 6.63570 7.36820 7.41532 7.65828 7.78864 7.99619 8.03463 8.48549 9.02718 9.66114 10.34440 11.31178 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022112 B = 0.003207 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.974689 B = 8727.530275 C = 8864.396580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.176 3.824 11 C 0.096 3.904 12 H 0.112 0.888 13 C -0.151 4.151 14 C 0.142 3.858 15 H 0.107 0.893 16 C 0.082 3.918 17 N -0.602 5.602 18 C 0.537 3.463 19 O -0.553 6.553 20 C -0.105 4.105 21 H 0.107 0.893 22 C -0.071 4.071 23 C -0.047 4.047 24 C -0.160 4.160 25 C 0.093 3.907 26 N -0.487 5.487 27 C 0.112 3.888 28 C -0.147 4.147 29 C -0.064 4.064 30 H 0.253 0.747 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.134 0.866 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.089 0.911 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -15.438 -7.930 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.099 0.901 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.006 4.006 12 H 0.130 0.870 13 C -0.191 4.191 14 C 0.033 3.967 15 H 0.125 0.875 16 C -0.044 4.044 17 N -0.335 5.335 18 C 0.325 3.675 19 O -0.432 6.432 20 C -0.126 4.126 21 H 0.125 0.875 22 C -0.108 4.108 23 C -0.055 4.055 24 C -0.180 4.180 25 C -0.063 4.063 26 N -0.195 5.195 27 C -0.045 4.045 28 C -0.149 4.149 29 C -0.102 4.102 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.152 0.848 40 H 0.174 0.826 41 H 0.171 0.829 42 H 0.108 0.892 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.413 -15.885 -8.228 17.945 hybrid contribution -0.163 1.686 0.125 1.699 sum 1.250 -14.199 -8.103 16.396 Atomic orbital electron populations 1.69908 1.04953 1.25226 1.56528 1.24811 0.95681 0.97718 1.02097 0.86052 0.78688 0.83749 0.77264 1.20459 1.21802 1.21733 1.19102 0.90398 0.82142 1.44246 0.90125 1.45754 1.01212 0.99198 1.86325 1.22268 0.84309 0.86931 1.01313 1.24371 0.97779 0.97798 0.80672 0.87046 1.24163 0.96763 0.98868 0.99282 1.23139 0.96521 0.86269 0.90761 0.87527 1.23361 0.79831 0.98985 1.02203 1.49169 1.09443 1.59500 1.15377 1.19711 0.85977 0.77316 0.84473 1.90661 1.15361 1.56832 1.80395 1.21947 0.96935 0.99192 0.94572 0.87459 1.20967 0.97763 0.95079 0.96968 1.20945 0.94951 0.95827 0.93771 1.21642 1.01725 0.97915 0.96738 1.22683 0.89753 0.95060 0.98823 1.67723 1.17324 1.26083 1.08382 1.22225 0.98905 0.91509 0.91812 1.21611 0.96304 0.98699 0.98305 1.20979 1.00049 0.93761 0.95388 0.93619 0.93292 0.92389 0.89782 0.91652 0.92544 0.91065 0.87651 0.89640 0.84841 0.82624 0.82865 0.89246 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.27 10.57 55.49 0.59 -25.68 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -5.97 10.38 -15.06 -0.16 -6.13 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.60 -13.88 3.07 -154.63 -0.47 -14.35 16 10 C 0.18 4.08 4.87 -0.50 0.00 4.08 16 11 C 0.10 1.78 5.18 -62.56 -0.32 1.45 16 12 H 0.11 2.02 8.06 -51.93 -0.42 1.60 16 13 C -0.15 -2.41 6.82 -22.29 -0.15 -2.57 16 14 C 0.14 2.47 5.52 -62.54 -0.35 2.13 16 15 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 16 C 0.08 1.27 5.64 -1.69 -0.01 1.26 16 17 N -0.60 -10.30 2.94 -156.81 -0.46 -10.76 16 18 C 0.54 9.07 7.15 -10.98 -0.08 8.99 16 19 O -0.55 -11.05 15.87 5.55 0.09 -10.97 16 20 C -0.11 -1.37 2.95 -90.31 -0.27 -1.63 16 21 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 22 C -0.07 -0.86 6.08 -26.97 -0.16 -1.02 16 23 C -0.05 -0.53 6.21 -104.22 -0.65 -1.18 16 24 C -0.16 -1.59 10.12 -39.45 -0.40 -1.98 16 25 C 0.09 0.93 11.19 -17.54 -0.20 0.73 16 26 N -0.49 -5.68 10.36 -13.22 -0.14 -5.82 16 27 C 0.11 1.21 11.19 -17.51 -0.20 1.02 16 28 C -0.15 -1.64 6.19 -104.11 -0.64 -2.29 16 29 C -0.06 -0.69 5.19 -26.78 -0.14 -0.83 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.05 1.31 7.73 -51.93 -0.40 0.91 16 32 H 0.06 1.49 7.47 -51.93 -0.39 1.10 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.69 6.46 -51.93 -0.34 0.35 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.11 1.43 7.02 -51.93 -0.36 1.06 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.09 0.84 7.16 -51.93 -0.37 0.47 16 43 H 0.09 0.97 7.89 -51.93 -0.41 0.56 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -31.68 344.79 -10.08 -41.77 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.04 Total: 2.55 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -3.82 Total: 1.76 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.49 Total: -56.60 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.68 -10.08 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032630018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.233 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds