Wall clock time and date at job start Fri Apr 10 2020 22:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99775 * 2 1 4 4 H 1.48501 * 109.47442 * 274.98215 * 3 2 1 5 5 H 1.48501 * 109.47123 * 34.98345 * 3 2 1 6 6 H 1.48496 * 109.47434 * 154.98125 * 3 2 1 7 7 C 1.38805 * 120.00547 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00562 * 186.37706 * 7 2 1 9 9 N 1.36939 * 119.99910 * 6.10719 * 7 2 1 10 10 C 1.47875 * 126.94274 * 353.96127 * 9 7 2 11 11 C 1.56018 * 105.10388 * 181.98015 * 10 9 7 12 12 H 1.09001 * 116.24544 * 158.83828 * 11 10 9 13 13 C 1.57080 * 99.60665 * 32.80966 * 11 10 9 14 14 C 1.49284 * 126.94694 * 173.65431 * 9 7 2 15 15 H 1.08998 * 116.15701 * 16.72298 * 14 9 7 16 16 C 1.56019 * 104.09280 * 246.71770 * 14 9 7 17 17 N 1.49261 * 105.36386 * 288.93781 * 16 14 9 18 18 C 1.34778 * 127.74506 * 182.18445 * 17 16 14 19 19 O 1.21285 * 119.99430 * 179.51160 * 18 17 16 20 20 C 1.50700 * 120.00412 * 359.51506 * 18 17 16 21 21 H 1.08993 * 115.54972 * 34.41254 * 20 18 17 22 22 C 1.53005 * 117.49420 * 248.74230 * 20 18 17 23 23 C 1.53002 * 117.49544 * 180.08825 * 20 18 17 24 24 H 1.08996 * 117.50194 * 359.97438 * 23 20 18 25 25 C 1.50697 * 117.49441 * 214.97433 * 23 20 18 26 26 C 1.38677 * 120.41936 * 120.00307 * 25 23 20 27 27 C 1.38629 * 118.42037 * 180.02562 * 26 25 23 28 28 C 1.38224 * 119.16207 * 359.97438 * 27 26 25 29 29 N 1.31849 * 120.76410 * 0.02562 * 28 27 26 30 30 C 1.31885 * 121.72879 * 359.70186 * 29 28 27 31 31 H 0.96996 * 120.00412 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.31640 * 300.89559 * 10 9 7 33 33 H 1.09001 * 110.31058 * 63.07533 * 10 9 7 34 34 H 1.09002 * 112.37105 * 64.27102 * 13 11 10 35 35 H 1.08997 * 112.37166 * 191.62635 * 13 11 10 36 36 H 1.08999 * 110.31734 * 47.67212 * 16 14 9 37 37 H 1.09000 * 110.31722 * 169.85939 * 16 14 9 38 38 H 1.09007 * 117.50000 * 0.02562 * 22 20 18 39 39 H 1.09002 * 117.49755 * 144.99193 * 22 20 18 40 40 H 1.07997 * 120.78745 * 359.97259 * 26 25 23 41 41 H 1.08001 * 120.41918 * 179.97438 * 27 26 25 42 42 H 1.08001 * 119.61620 * 180.02562 * 28 27 26 43 43 H 1.07999 * 119.62102 * 180.30771 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4123 0.5921 7 6 2.0103 -1.2020 0.0005 8 1 3.0854 -1.2049 0.1044 9 7 1.3316 -2.3847 -0.1251 10 6 -0.1354 -2.5696 -0.1458 11 6 -0.3494 -4.1111 -0.2567 12 1 -1.3203 -4.4874 0.0653 13 6 0.8998 -4.6082 0.5556 14 6 1.9230 -3.7471 -0.2752 15 1 2.9747 -3.8466 -0.0069 16 6 1.5189 -4.1798 -1.7187 17 7 0.0492 -4.4334 -1.6587 18 6 -0.7540 -4.8690 -2.6495 19 8 -1.9371 -5.0363 -2.4417 20 6 -0.1821 -5.1480 -4.0156 21 1 0.8330 -5.5448 -4.0281 22 6 -0.5895 -4.2133 -5.1564 23 6 -1.1458 -5.6382 -5.0982 24 1 -2.1933 -5.7592 -4.8223 25 6 -0.6186 -6.6323 -6.1006 26 6 -1.2026 -7.8842 -6.2218 27 6 -0.6840 -8.7665 -7.1570 28 6 0.3898 -8.3715 -7.9325 29 7 0.9200 -7.1727 -7.7900 30 6 0.4495 -6.3059 -6.9144 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5776 -2.1914 0.7759 33 1 -0.5683 -2.0644 -1.0092 34 1 0.8582 -4.3112 1.6036 35 1 1.0694 -5.6788 0.4418 36 1 1.7312 -3.3791 -2.4272 37 1 2.0488 -5.0886 -2.0037 38 1 -1.2708 -3.3963 -4.9187 39 1 0.1577 -3.9951 -5.9194 40 1 -2.0408 -8.1656 -5.6016 41 1 -1.1137 -9.7499 -7.2781 42 1 0.7994 -9.0528 -8.6636 43 1 0.9068 -5.3312 -6.8296 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032642278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:06 Heat of formation + Delta-G solvation = 89.218946 kcal Electronic energy + Delta-G solvation = -25611.989843 eV Core-core repulsion = 22045.854655 eV Total energy + Delta-G solvation = -3566.135188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.68233 -39.95674 -38.42146 -36.30718 -33.59808 -32.63286 -31.59258 -30.96030 -29.08974 -28.56661 -25.32087 -24.95911 -24.41482 -23.58433 -22.89097 -21.09503 -20.12210 -19.82781 -18.39470 -17.73807 -17.27579 -16.53734 -16.26475 -15.74454 -15.36737 -15.04838 -14.71961 -14.27538 -14.09287 -13.95768 -13.50391 -13.25900 -13.21171 -12.74641 -12.32222 -12.09349 -11.89036 -11.84347 -11.66093 -11.35439 -11.17609 -11.03517 -10.89579 -10.80556 -10.62398 -10.54035 -10.27534 -10.09157 -9.92294 -9.68441 -9.64398 -9.51922 -8.98092 -8.71170 -8.03764 -6.94883 -5.80712 -3.14621 0.83215 1.05006 2.80209 3.22342 3.35470 3.40551 3.43189 3.54755 3.96649 4.15533 4.39514 4.44420 4.57795 4.69014 4.72644 4.78457 4.83948 4.97970 5.08789 5.16224 5.20169 5.29663 5.32174 5.51910 5.53994 5.59882 5.67812 5.74640 5.81406 5.87166 5.93522 5.99067 6.15051 6.16322 6.26767 6.37320 6.45893 6.46005 6.56188 6.65750 7.37047 7.48765 7.69299 7.74540 8.04922 8.08328 8.55672 9.07003 9.68214 10.37696 11.31690 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.020101 B = 0.003118 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.652505 B = 8976.856320 C = 9451.879374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.174 3.826 11 C 0.096 3.904 12 H 0.111 0.889 13 C -0.152 4.152 14 C 0.140 3.860 15 H 0.108 0.892 16 C 0.087 3.913 17 N -0.603 5.603 18 C 0.558 3.442 19 O -0.557 6.557 20 C -0.164 4.164 21 H 0.121 0.879 22 C -0.140 4.140 23 C -0.088 4.088 24 H 0.129 0.871 25 C -0.097 4.097 26 C -0.067 4.067 27 C -0.170 4.170 28 C 0.088 3.912 29 N -0.482 5.482 30 C 0.098 3.902 31 H 0.254 0.746 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.154 0.846 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 -15.728 -10.653 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.049 3.951 11 C -0.006 4.006 12 H 0.129 0.871 13 C -0.192 4.192 14 C 0.031 3.969 15 H 0.125 0.875 16 C -0.038 4.038 17 N -0.335 5.335 18 C 0.347 3.653 19 O -0.437 6.437 20 C -0.185 4.185 21 H 0.139 0.861 22 C -0.178 4.178 23 C -0.108 4.108 24 H 0.147 0.853 25 C -0.099 4.099 26 C -0.093 4.093 27 C -0.190 4.190 28 C -0.069 4.069 29 N -0.190 5.190 30 C -0.059 4.059 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.172 0.828 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.441 -15.302 -11.113 18.917 hybrid contribution -0.257 0.661 0.493 0.864 sum 0.184 -14.641 -10.620 18.088 Atomic orbital electron populations 1.69929 1.04991 1.25351 1.56040 1.24840 0.95661 0.97731 1.01882 0.86122 0.78669 0.83558 0.77520 1.21593 1.21775 1.20566 1.19047 0.90987 0.82162 1.43920 0.90135 1.45245 1.01292 1.00407 1.85199 1.21934 0.84770 0.87227 1.01147 1.24312 0.97788 0.98934 0.79580 0.87065 1.24220 0.96825 0.98421 0.99688 1.23247 0.96525 0.86573 0.90531 0.87470 1.23538 0.79307 0.99080 1.01843 1.49398 1.09680 1.63578 1.10859 1.19005 0.85429 0.76743 0.84169 1.90656 1.15631 1.54656 1.82726 1.22302 1.00306 1.06476 0.89416 0.86113 1.23130 1.03224 0.93012 0.98388 1.20993 0.99433 0.94037 0.96304 0.85320 1.20189 0.97149 0.95082 0.97497 1.21487 0.98906 0.92415 0.96539 1.22145 0.98448 1.00956 0.97466 1.22773 0.93213 0.93155 0.97739 1.67717 1.29310 1.03151 1.18826 1.22745 0.93180 0.98856 0.91126 0.93573 0.93012 0.93158 0.89712 0.91709 0.90774 0.92837 0.87276 0.87469 0.84588 0.84722 0.82848 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 10.60 55.49 0.59 -25.82 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 3 Si 0.91 21.45 29.56 -169.99 -5.02 16.42 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.23 -6.10 10.36 -15.06 -0.16 -6.26 16 8 H 0.08 2.01 7.84 -52.48 -0.41 1.60 16 9 N -0.60 -14.09 3.02 -156.12 -0.47 -14.56 16 10 C 0.17 4.13 4.76 -1.67 -0.01 4.12 16 11 C 0.10 1.85 5.19 -62.56 -0.32 1.52 16 12 H 0.11 2.09 8.05 -51.93 -0.42 1.67 16 13 C -0.15 -2.53 6.84 -22.10 -0.15 -2.68 16 14 C 0.14 2.53 5.54 -62.35 -0.35 2.19 16 15 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 16 C 0.09 1.45 5.97 -0.89 -0.01 1.45 16 17 N -0.60 -10.94 3.00 -155.66 -0.47 -11.41 16 18 C 0.56 9.98 7.69 -10.98 -0.08 9.90 16 19 O -0.56 -11.56 16.60 5.55 0.09 -11.47 16 20 C -0.16 -2.25 5.27 -91.77 -0.48 -2.73 16 21 H 0.12 1.49 7.91 -51.93 -0.41 1.08 16 22 C -0.14 -1.70 9.57 -26.69 -0.26 -1.95 16 23 C -0.09 -1.07 5.58 -91.73 -0.51 -1.58 16 24 H 0.13 1.68 7.67 -51.93 -0.40 1.28 16 25 C -0.10 -1.07 5.62 -104.48 -0.59 -1.65 16 26 C -0.07 -0.65 9.89 -39.27 -0.39 -1.04 16 27 C -0.17 -1.42 10.11 -39.44 -0.40 -1.82 16 28 C 0.09 0.82 11.18 -17.55 -0.20 0.62 16 29 N -0.48 -5.59 10.36 -13.25 -0.14 -5.72 16 30 C 0.10 1.08 10.48 -17.55 -0.18 0.90 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.05 1.35 7.63 -51.93 -0.40 0.95 16 33 H 0.05 1.37 7.53 -51.93 -0.39 0.98 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.11 1.05 6.20 -51.93 -0.32 0.73 16 40 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.16 1.51 6.04 -52.49 -0.32 1.19 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -32.17 354.20 -10.26 -42.44 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.00 Total: 4.02 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -4.18 Total: 0.77 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.49 Total: -57.51 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.17 -10.26 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032642278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.654 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds