Wall clock time and date at job start Fri Apr 10 2020 22:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39916 * 126.00431 * 2 1 4 4 C 1.38315 * 107.13070 * 180.02562 * 3 2 1 5 5 C 1.41364 * 131.73391 * 180.02562 * 4 3 2 6 6 C 1.35514 * 119.54958 * 179.97438 * 5 4 3 7 7 C 1.46456 * 118.96405 * 359.97438 * 6 5 4 8 8 C 1.47494 * 120.20037 * 179.72521 * 7 6 5 9 9 O 1.21608 * 119.99663 * 180.02562 * 8 7 6 10 10 N 1.34772 * 120.00114 * 0.02562 * 8 7 6 11 11 C 1.46496 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47417 * 179.97438 * 11 10 8 13 13 H 1.09005 * 112.96383 * 306.68037 * 12 11 10 14 14 C 1.53935 * 113.77310 * 174.99736 * 12 11 10 15 15 C 1.53939 * 86.29318 * 222.09252 * 14 12 11 16 16 N 1.47584 * 86.11821 * 23.60754 * 15 14 12 17 17 C 1.36930 * 134.49565 * 155.36496 * 16 15 14 18 18 H 1.07999 * 119.99992 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00189 * 359.97438 * 17 16 15 20 20 N 1.31625 * 119.99726 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00205 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47095 * 59.99924 * 21 19 17 23 23 H 1.48500 * 109.47048 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46938 * 300.00084 * 21 19 17 25 25 C 1.36311 * 119.60041 * 0.02562 * 7 6 5 26 26 N 1.36528 * 120.65132 * 359.97438 * 25 7 6 27 27 C 1.35279 * 125.99671 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46889 * 269.95612 * 1 2 3 29 29 H 1.09002 * 109.47199 * 29.95252 * 1 2 3 30 30 H 1.08994 * 109.47363 * 149.95903 * 1 2 3 31 31 H 1.08010 * 126.43317 * 0.07517 * 3 2 1 32 32 H 1.08001 * 120.22179 * 359.97438 * 5 4 3 33 33 H 1.07996 * 120.52056 * 179.97438 * 6 5 4 34 34 H 0.97006 * 119.99818 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.47163 * 299.99475 * 11 10 8 36 36 H 1.08998 * 109.47566 * 59.99476 * 11 10 8 37 37 H 1.09005 * 113.74434 * 336.44123 * 14 12 11 38 38 H 1.09002 * 113.74583 * 107.63675 * 14 12 11 39 39 H 1.09001 * 113.77698 * 137.90764 * 15 14 12 40 40 H 1.09000 * 113.77280 * 269.19344 * 15 14 12 41 41 H 0.97000 * 119.99784 * 179.97438 * 20 19 17 42 42 H 1.08000 * 119.67353 * 179.97438 * 25 7 6 43 43 H 1.07998 * 125.53182 * 359.93176 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3295 1.1319 0.0000 4 6 3.6382 0.6845 -0.0006 5 6 4.8699 1.3783 -0.0004 6 6 6.0308 0.6791 -0.0006 7 6 5.9773 -0.7844 -0.0004 8 6 7.2241 -1.5725 -0.0068 9 8 7.1753 -2.7876 -0.0071 10 7 8.4173 -0.9459 -0.0122 11 6 9.6556 -1.7286 -0.0190 12 6 10.8574 -0.7817 -0.0249 13 1 10.8163 -0.0472 -0.8292 14 6 12.2140 -1.5001 0.0905 15 6 12.6120 -0.3785 1.0668 16 7 11.1649 -0.2027 1.2974 17 6 10.4106 0.2969 2.3252 18 1 9.3337 0.3143 2.2458 19 6 11.0300 0.7799 3.4697 20 7 12.3425 0.7581 3.5667 21 14 10.0010 1.4608 4.8721 22 1 9.0899 0.4023 5.3768 23 1 10.8951 1.9097 5.9695 24 1 9.1999 2.6122 4.3846 25 6 4.7683 -1.4140 -0.0006 26 7 3.6084 -0.6937 -0.0004 27 6 2.3021 -1.0945 -0.0005 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8895 -0.5144 31 1 2.0035 2.1616 0.0011 32 1 4.8855 2.4582 -0.0001 33 1 6.9806 1.1931 -0.0008 34 1 8.4561 0.0234 -0.0123 35 1 9.6927 -2.3578 0.8703 36 1 9.6838 -2.3564 -0.9096 37 1 12.1513 -2.4844 0.5548 38 1 12.7892 -1.5031 -0.8353 39 1 13.1568 -0.7310 1.9426 40 1 13.0887 0.4750 0.5847 41 1 12.7754 1.0960 4.3663 42 1 4.7274 -2.4932 -0.0010 43 1 1.9599 -2.1188 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038332841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:14 Heat of formation + Delta-G solvation = 91.496940 kcal Electronic energy + Delta-G solvation = -25088.799167 eV Core-core repulsion = 21522.762760 eV Total energy + Delta-G solvation = -3566.036407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.25268 -39.57397 -37.99126 -36.34399 -34.30579 -33.29116 -32.22106 -31.61860 -28.59304 -27.97440 -27.78138 -26.82273 -23.52000 -23.39814 -22.61046 -22.03593 -20.76330 -19.85954 -19.10250 -17.96467 -17.16317 -16.53566 -16.32948 -15.67806 -15.63348 -15.25761 -14.65949 -14.55684 -14.50477 -14.11206 -13.79184 -13.36616 -13.31013 -13.25523 -13.09413 -12.96415 -12.30700 -11.96330 -11.78572 -11.59307 -11.46163 -11.15006 -11.05841 -10.99147 -10.75807 -10.59727 -10.50170 -10.12660 -9.82913 -9.78327 -9.43727 -8.82750 -8.74138 -8.44280 -7.51856 -6.93244 -5.79591 -3.12425 0.62715 1.05937 2.47510 2.55608 2.98508 3.36277 3.41487 3.42202 3.47960 3.65556 4.35852 4.40194 4.57674 4.67641 4.81507 4.83449 5.05569 5.09006 5.10498 5.34761 5.37790 5.46580 5.50349 5.57372 5.60871 5.70123 5.74123 5.85361 5.87696 5.93666 6.03338 6.15641 6.27088 6.28473 6.36884 6.58167 6.64825 6.72317 6.79511 6.79795 7.11950 7.21315 7.37285 7.56104 7.75913 7.95292 8.39228 9.00940 9.67939 10.55773 11.36995 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015712 B = 0.003376 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.655294 B = 8291.911421 C = 9509.753315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.117 4.117 3 C -0.202 4.202 4 C 0.050 3.950 5 C -0.093 4.093 6 C -0.099 4.099 7 C -0.162 4.162 8 C 0.567 3.433 9 O -0.552 6.552 10 N -0.703 5.703 11 C 0.123 3.877 12 C 0.125 3.875 13 H 0.050 0.950 14 C -0.155 4.155 15 C 0.159 3.841 16 N -0.602 5.602 17 C -0.222 4.222 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.125 3.875 26 N -0.354 5.354 27 C -0.053 4.053 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.403 0.597 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.027 0.973 41 H 0.254 0.746 42 H 0.174 0.826 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.638 -0.955 -10.244 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.226 4.226 4 C -0.055 4.055 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.168 4.168 8 C 0.353 3.647 9 O -0.432 6.432 10 N -0.352 5.352 11 C -0.001 4.001 12 C 0.017 3.983 13 H 0.067 0.933 14 C -0.194 4.194 15 C 0.034 3.966 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.736 3.264 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.212 1.212 25 C 0.003 3.997 26 N -0.018 5.018 27 C -0.180 4.180 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.191 0.809 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.537 -1.877 -9.905 19.367 hybrid contribution -0.399 1.028 0.893 1.419 sum -16.936 -0.849 -9.011 19.203 Atomic orbital electron populations 1.20205 0.89456 1.02354 1.01962 1.19481 0.95817 0.92149 1.04682 1.20974 0.89542 0.98808 1.13300 1.18963 0.95642 0.81825 1.09036 1.20495 0.89123 1.00329 1.01209 1.22083 0.99036 0.91487 0.99324 1.20360 0.92855 0.93959 1.09620 1.17632 0.83161 0.86950 0.76910 1.90768 1.87502 1.13384 1.51536 1.45823 1.05397 1.10955 1.73016 1.21835 0.82150 0.94499 1.01663 1.22515 0.92351 0.93164 0.90232 0.93258 1.23771 0.96032 1.00035 0.99597 1.22198 0.87175 0.92033 0.95242 1.46073 1.02473 1.72643 1.11700 1.18878 0.89469 1.33828 0.92732 0.90461 1.24751 0.95717 1.01584 0.98158 1.69807 1.07041 1.51405 1.28363 0.86294 0.79042 0.78910 0.82107 1.21128 1.21509 1.21171 1.21687 0.83091 0.98182 0.96784 1.41436 1.05397 1.07089 1.47922 1.21697 0.79735 1.00005 1.16516 0.91526 0.91557 0.91856 0.83725 0.83535 0.84071 0.76103 0.90686 0.91895 0.90468 0.92747 0.90800 0.95535 0.93596 0.80870 0.81384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.36 36.00 0.37 -0.23 16 2 C -0.12 -1.24 6.10 -105.05 -0.64 -1.88 16 3 C -0.20 -2.31 10.91 -38.93 -0.42 -2.73 16 4 C 0.05 0.64 6.71 -83.94 -0.56 0.08 16 5 C -0.09 -1.11 10.09 -39.37 -0.40 -1.50 16 6 C -0.10 -1.27 9.73 -37.25 -0.36 -1.63 16 7 C -0.16 -2.35 5.98 -103.51 -0.62 -2.97 16 8 C 0.57 9.57 7.77 -12.49 -0.10 9.47 16 9 O -0.55 -10.72 16.28 5.27 0.09 -10.63 16 10 N -0.70 -11.66 5.49 -61.36 -0.34 -12.00 16 11 C 0.12 2.16 5.54 -4.04 -0.02 2.14 16 12 C 0.13 2.33 4.33 -66.87 -0.29 2.04 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 14 C -0.16 -2.77 7.86 -25.81 -0.20 -2.97 16 15 C 0.16 3.57 7.51 -2.98 -0.02 3.55 16 16 N -0.60 -14.40 3.57 -170.75 -0.61 -15.01 16 17 C -0.22 -5.86 10.51 -15.06 -0.16 -6.02 16 18 H 0.08 1.96 7.80 -52.49 -0.41 1.55 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 20 N -0.92 -26.73 11.38 55.49 0.63 -26.10 16 21 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.13 1.68 10.45 -16.15 -0.17 1.51 16 26 N -0.35 -4.56 2.93 -60.50 -0.18 -4.74 16 27 C -0.05 -0.59 11.49 -16.46 -0.19 -0.78 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.14 1.63 6.58 -52.49 -0.35 1.29 16 34 H 0.40 6.27 6.57 -40.82 -0.27 6.00 16 35 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.86 7.15 -51.93 -0.37 1.49 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.17 2.12 7.56 -52.49 -0.40 1.72 16 43 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -32.53 362.76 -9.84 -42.37 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.00 Total: 5.88 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.88 Total: -2.15 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.49 Total: -57.85 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.53 -9.84 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038332841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.871 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds