Wall clock time and date at job start Fri Apr 10 2020 22:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39916 * 126.00431 * 2 1 4 4 C 1.38315 * 107.13070 * 180.02562 * 3 2 1 5 5 C 1.41364 * 131.73391 * 180.02562 * 4 3 2 6 6 C 1.35514 * 119.54958 * 179.97438 * 5 4 3 7 7 C 1.46456 * 118.96405 * 359.97438 * 6 5 4 8 8 C 1.47494 * 120.20037 * 179.72521 * 7 6 5 9 9 O 1.21608 * 119.99663 * 180.02562 * 8 7 6 10 10 N 1.34772 * 120.00114 * 0.02562 * 8 7 6 11 11 C 1.46496 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47417 * 179.97438 * 11 10 8 13 13 H 1.09005 * 112.96383 * 306.68037 * 12 11 10 14 14 C 1.53935 * 113.77310 * 174.99736 * 12 11 10 15 15 C 1.53939 * 86.29318 * 222.09252 * 14 12 11 16 16 N 1.47584 * 86.11821 * 23.60754 * 15 14 12 17 17 C 1.36930 * 134.49565 * 155.36496 * 16 15 14 18 18 H 1.07999 * 119.99992 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00189 * 359.97438 * 17 16 15 20 20 N 1.31625 * 119.99726 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00205 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47095 * 59.99924 * 21 19 17 23 23 H 1.48500 * 109.47048 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46938 * 300.00084 * 21 19 17 25 25 C 1.36311 * 119.60041 * 0.02562 * 7 6 5 26 26 N 1.36528 * 120.65132 * 359.97438 * 25 7 6 27 27 C 1.35279 * 125.99671 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46889 * 269.95612 * 1 2 3 29 29 H 1.09002 * 109.47199 * 29.95252 * 1 2 3 30 30 H 1.08994 * 109.47363 * 149.95903 * 1 2 3 31 31 H 1.08010 * 126.43317 * 0.07517 * 3 2 1 32 32 H 1.08001 * 120.22179 * 359.97438 * 5 4 3 33 33 H 1.07996 * 120.52056 * 179.97438 * 6 5 4 34 34 H 0.97006 * 119.99818 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.47163 * 299.99475 * 11 10 8 36 36 H 1.08998 * 109.47566 * 59.99476 * 11 10 8 37 37 H 1.09005 * 113.74434 * 336.44123 * 14 12 11 38 38 H 1.09002 * 113.74583 * 107.63675 * 14 12 11 39 39 H 1.09001 * 113.77698 * 137.90764 * 15 14 12 40 40 H 1.09000 * 113.77280 * 269.19344 * 15 14 12 41 41 H 0.97000 * 119.99784 * 179.97438 * 20 19 17 42 42 H 1.08000 * 119.67353 * 179.97438 * 25 7 6 43 43 H 1.07998 * 125.53182 * 359.93176 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3295 1.1319 0.0000 4 6 3.6382 0.6845 -0.0006 5 6 4.8699 1.3783 -0.0004 6 6 6.0308 0.6791 -0.0006 7 6 5.9773 -0.7844 -0.0004 8 6 7.2241 -1.5725 -0.0068 9 8 7.1753 -2.7876 -0.0071 10 7 8.4173 -0.9459 -0.0122 11 6 9.6556 -1.7286 -0.0190 12 6 10.8574 -0.7817 -0.0249 13 1 10.8163 -0.0472 -0.8292 14 6 12.2140 -1.5001 0.0905 15 6 12.6120 -0.3785 1.0668 16 7 11.1649 -0.2027 1.2974 17 6 10.4106 0.2969 2.3252 18 1 9.3337 0.3143 2.2458 19 6 11.0300 0.7799 3.4697 20 7 12.3425 0.7581 3.5667 21 14 10.0010 1.4608 4.8721 22 1 9.0899 0.4023 5.3768 23 1 10.8951 1.9097 5.9695 24 1 9.1999 2.6122 4.3846 25 6 4.7683 -1.4140 -0.0006 26 7 3.6084 -0.6937 -0.0004 27 6 2.3021 -1.0945 -0.0005 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8895 -0.5144 31 1 2.0035 2.1616 0.0011 32 1 4.8855 2.4582 -0.0001 33 1 6.9806 1.1931 -0.0008 34 1 8.4561 0.0234 -0.0123 35 1 9.6927 -2.3578 0.8703 36 1 9.6838 -2.3564 -0.9096 37 1 12.1513 -2.4844 0.5548 38 1 12.7892 -1.5031 -0.8353 39 1 13.1568 -0.7310 1.9426 40 1 13.0887 0.4750 0.5847 41 1 12.7754 1.0960 4.3663 42 1 4.7274 -2.4932 -0.0010 43 1 1.9599 -2.1188 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038332841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:14 Heat of formation + Delta-G solvation = 73.001219 kcal Electronic energy + Delta-G solvation = -25089.601201 eV Core-core repulsion = 21522.762760 eV Total energy + Delta-G solvation = -3566.838442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.14996 -40.91099 -39.60078 -37.30982 -35.69339 -34.30122 -34.12726 -32.50979 -29.99221 -29.62513 -28.82536 -27.80466 -25.28616 -24.65152 -23.62860 -23.34774 -21.89636 -21.08652 -20.57873 -19.09953 -18.52631 -17.98309 -17.32410 -17.11595 -16.92127 -16.58969 -16.13219 -15.84421 -15.59895 -15.45041 -15.20460 -14.83950 -14.59815 -14.10410 -13.91791 -13.82233 -13.60786 -13.28704 -13.08605 -12.92559 -12.71250 -12.64118 -12.60290 -12.35137 -12.32215 -11.96773 -11.86315 -11.54609 -11.44290 -11.42779 -11.02792 -10.81963 -10.11973 -9.34754 -8.88070 -8.42832 -7.86748 -5.18084 -0.39029 0.12922 1.43084 1.45139 1.50451 1.52034 1.59375 1.97834 2.24518 2.47478 2.57705 3.31986 3.38170 3.43777 3.58016 3.77896 3.83258 3.96550 3.99562 4.10187 4.29260 4.35539 4.37481 4.53675 4.61884 4.70194 4.74826 4.78960 4.88156 4.95130 4.98817 5.01579 5.07335 5.09887 5.24313 5.24371 5.34240 5.38062 5.47427 5.62138 5.75784 5.89189 5.92765 5.99034 6.23011 6.45410 6.96011 7.08680 7.66034 8.60612 9.29999 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015712 B = 0.003376 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.655294 B = 8291.911421 C = 9509.753315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.122 4.122 3 C -0.202 4.202 4 C 0.018 3.982 5 C -0.086 4.086 6 C -0.115 4.115 7 C -0.180 4.180 8 C 0.568 3.432 9 O -0.583 6.583 10 N -0.701 5.701 11 C 0.131 3.869 12 C 0.132 3.868 13 H 0.074 0.926 14 C -0.130 4.130 15 C 0.149 3.851 16 N -0.630 5.630 17 C -0.212 4.212 18 H 0.084 0.916 19 C -0.069 4.069 20 N -0.954 5.954 21 Si 0.963 3.037 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.273 1.273 25 C 0.129 3.871 26 N -0.364 5.364 27 C -0.061 4.061 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.149 0.851 34 H 0.409 0.591 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.038 0.962 40 H 0.023 0.977 41 H 0.245 0.755 42 H 0.179 0.821 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.029 -0.567 -11.661 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C -0.226 4.226 4 C -0.085 4.085 5 C -0.105 4.105 6 C -0.136 4.136 7 C -0.186 4.186 8 C 0.356 3.644 9 O -0.466 6.466 10 N -0.351 5.351 11 C 0.007 3.993 12 C 0.026 3.974 13 H 0.091 0.909 14 C -0.169 4.169 15 C 0.024 3.976 16 N -0.356 5.356 17 C -0.341 4.341 18 H 0.102 0.898 19 C -0.261 4.261 20 N -0.604 5.604 21 Si 0.792 3.208 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.199 1.199 25 C 0.006 3.994 26 N -0.030 5.030 27 C -0.187 4.187 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.182 0.818 32 H 0.189 0.811 33 H 0.167 0.833 34 H 0.245 0.755 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.196 0.804 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -18.959 -1.473 -11.362 22.151 hybrid contribution 0.189 0.878 1.253 1.541 sum -18.770 -0.595 -10.108 21.327 Atomic orbital electron populations 1.20285 0.87126 1.03563 1.02802 1.19955 0.97454 0.91603 1.03600 1.21394 0.89196 1.00113 1.11881 1.19367 0.96581 0.82080 1.10480 1.20807 0.88519 1.01544 0.99598 1.22132 0.99863 0.90725 1.00838 1.20198 0.92019 0.94687 1.11669 1.17944 0.83826 0.86699 0.75932 1.90740 1.87992 1.14759 1.53107 1.45779 1.05160 1.11172 1.72952 1.21635 0.82298 0.94111 1.01272 1.22690 0.93243 0.93261 0.88187 0.90911 1.23565 0.95332 0.98163 0.99835 1.22174 0.86426 0.93755 0.95251 1.46425 1.03280 1.72573 1.13370 1.19237 0.90117 1.31487 0.93274 0.89838 1.25470 0.96655 1.03379 1.00642 1.69987 1.08389 1.53449 1.28539 0.85383 0.77531 0.78448 0.79428 1.21351 1.22339 1.19902 1.21758 0.83296 0.98507 0.95872 1.41607 1.05675 1.07281 1.48420 1.22308 0.79155 1.01556 1.15664 0.90754 0.90554 0.90529 0.81834 0.81060 0.83316 0.75467 0.93689 0.89674 0.90363 0.88650 0.94359 0.95876 0.94572 0.80358 0.79101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.36 71.23 0.74 -0.19 16 2 C -0.12 -2.27 6.10 -20.14 -0.12 -2.39 16 3 C -0.20 -4.13 10.91 22.69 0.25 -3.89 16 4 C 0.02 0.44 6.71 38.98 0.26 0.71 16 5 C -0.09 -1.92 10.09 22.41 0.23 -1.69 16 6 C -0.12 -2.86 9.73 23.78 0.23 -2.63 16 7 C -0.18 -5.13 5.98 -19.15 -0.11 -5.25 16 8 C 0.57 19.01 7.77 86.68 0.67 19.69 16 9 O -0.58 -22.70 16.28 -4.06 -0.07 -22.77 16 10 N -0.70 -22.71 5.49 -466.30 -2.56 -25.27 16 11 C 0.13 4.48 5.54 86.38 0.48 4.95 16 12 C 0.13 4.70 4.33 45.09 0.20 4.89 16 13 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 14 C -0.13 -4.38 7.86 31.25 0.25 -4.14 16 15 C 0.15 6.75 7.51 86.48 0.65 7.40 16 16 N -0.63 -29.98 3.57 -694.14 -2.48 -32.47 16 17 C -0.21 -11.28 10.51 84.03 0.88 -10.40 16 18 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 20 N -0.95 -57.13 11.38 21.65 0.25 -56.88 16 21 Si 0.96 45.78 29.55 68.60 2.03 47.81 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 25 C 0.13 3.40 10.45 83.51 0.87 4.27 16 26 N -0.36 -8.94 2.93 -345.31 -1.01 -9.95 16 27 C -0.06 -1.23 11.49 83.26 0.96 -0.27 16 28 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.15 3.30 6.58 -2.91 -0.02 3.28 16 34 H 0.41 12.29 6.57 -92.70 -0.61 11.68 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.08 2.63 8.10 -2.38 -0.02 2.61 16 38 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.04 1.99 7.15 -2.39 -0.02 1.97 16 40 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.18 4.33 7.56 -2.91 -0.02 4.30 16 43 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -71.37 362.76 3.46 -67.91 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.41 Total: 23.96 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 6.89 Total: 7.66 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -5.81 Total: -124.57 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.07 Total: -22.77 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.37 3.46 -67.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038332841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.913 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds