Wall clock time and date at job start Fri Apr 10 2020 22:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39919 * 126.00105 * 2 1 4 4 C 1.38328 * 107.12483 * 180.02562 * 3 2 1 5 5 C 1.41354 * 131.72336 * 180.02562 * 4 3 2 6 6 C 1.35522 * 119.54332 * 179.73804 * 5 4 3 7 7 C 1.46451 * 118.96123 * 0.48184 * 6 5 4 8 8 C 1.47495 * 120.19792 * 179.77362 * 7 6 5 9 9 O 1.21608 * 120.00065 * 179.71882 * 8 7 6 10 10 N 1.34781 * 120.00212 * 359.72276 * 8 7 6 11 11 C 1.46495 * 120.00148 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47233 * 180.02562 * 11 10 8 13 13 H 1.08999 * 112.74125 * 56.23860 * 12 11 10 14 14 C 1.53494 * 113.47004 * 187.06338 * 12 11 10 15 15 C 1.53492 * 83.34554 * 140.84464 * 14 12 11 16 16 N 1.47061 * 87.98847 * 333.93398 * 15 14 12 17 17 C 1.36941 * 136.05912 * 207.15748 * 16 15 14 18 18 H 1.08000 * 119.99702 * 173.50465 * 17 16 15 19 19 C 1.38808 * 119.99932 * 353.51175 * 17 16 15 20 20 N 1.31617 * 120.00106 * 5.05088 * 19 17 16 21 21 Si 1.86803 * 120.00073 * 185.05512 * 19 17 16 22 22 H 1.48505 * 109.46897 * 94.98667 * 21 19 17 23 23 H 1.48500 * 109.47137 * 214.98259 * 21 19 17 24 24 H 1.48496 * 109.47074 * 334.98839 * 21 19 17 25 25 C 1.36302 * 119.60444 * 359.49940 * 7 6 5 26 26 N 1.36533 * 120.65052 * 0.25618 * 25 7 6 27 27 C 1.35283 * 126.00024 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47216 * 90.02756 * 1 2 3 29 29 H 1.09007 * 109.47096 * 210.02643 * 1 2 3 30 30 H 1.08996 * 109.46949 * 330.02303 * 1 2 3 31 31 H 1.07996 * 126.43418 * 359.96303 * 3 2 1 32 32 H 1.07993 * 120.22680 * 359.94945 * 5 4 3 33 33 H 1.07998 * 120.51954 * 180.23090 * 6 5 4 34 34 H 0.97003 * 119.99478 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.47390 * 300.00027 * 11 10 8 36 36 H 1.08999 * 109.47144 * 60.00214 * 11 10 8 37 37 H 1.09002 * 114.20544 * 254.43654 * 14 12 11 38 38 H 1.09001 * 114.20537 * 27.25648 * 14 12 11 39 39 H 1.09008 * 113.47195 * 219.14849 * 15 14 12 40 40 H 1.09007 * 113.47056 * 88.71147 * 15 14 12 41 41 H 0.96998 * 120.00306 * 179.97438 * 20 19 17 42 42 H 1.08007 * 119.67615 * 180.27394 * 25 7 6 43 43 H 1.07996 * 125.52019 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1320 0.0000 4 6 3.6383 0.6844 -0.0006 5 6 4.8698 1.3783 -0.0004 6 6 6.0307 0.6792 0.0043 7 6 5.9772 -0.7843 -0.0018 8 6 7.2241 -1.5723 -0.0020 9 8 7.1755 -2.7874 -0.0018 10 7 8.4173 -0.9456 -0.0022 11 6 9.6557 -1.7282 -0.0018 12 6 10.8575 -0.7813 -0.0015 13 1 10.8425 -0.0817 0.8342 14 6 12.2025 -1.5005 -0.1742 15 6 12.5362 -0.2861 -1.0516 16 7 11.0948 -0.1358 -1.3015 17 6 10.3161 0.3782 -2.3039 18 1 9.2431 0.2612 -2.2680 19 6 10.9060 1.0495 -3.3660 20 7 12.2175 1.1063 -3.4618 21 14 9.8386 1.8726 -4.6593 22 1 9.6593 3.3058 -4.3142 23 1 10.4950 1.7615 -5.9867 24 1 8.5130 1.2049 -4.7051 25 6 4.7684 -1.4139 -0.0016 26 7 3.6084 -0.6937 -0.0010 27 6 2.3021 -1.0945 -0.0005 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 2.0035 2.1616 -0.0006 32 1 4.8854 2.4582 -0.0005 33 1 6.9805 1.1933 0.0083 34 1 8.4561 0.0237 -0.0019 35 1 9.6884 -2.3564 0.8885 36 1 9.6884 -2.3571 -0.8915 37 1 12.7936 -1.5681 0.7391 38 1 12.1390 -2.4421 -0.7197 39 1 13.1075 -0.5396 -1.9447 40 1 12.9693 0.5454 -0.4955 41 1 12.6297 1.5751 -4.2042 42 1 4.7276 -2.4932 -0.0016 43 1 1.9598 -2.1187 -0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038332842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:18 Heat of formation + Delta-G solvation = 94.505146 kcal Electronic energy + Delta-G solvation = -25137.098659 eV Core-core repulsion = 21571.192698 eV Total energy + Delta-G solvation = -3565.905961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.24238 -39.58916 -38.17415 -36.33513 -34.29381 -33.27811 -32.27559 -31.61196 -28.58167 -28.02592 -27.78021 -26.79328 -23.52567 -23.46755 -22.58799 -21.93003 -20.74328 -19.85065 -19.22142 -17.95845 -17.15194 -16.53264 -16.31318 -15.67582 -15.62928 -15.28041 -14.64033 -14.54929 -14.49608 -14.10486 -13.80489 -13.35223 -13.29587 -13.24483 -13.08439 -12.95432 -12.29652 -11.98248 -11.77513 -11.61557 -11.57283 -11.13583 -11.05697 -10.97524 -10.82335 -10.60511 -10.49017 -10.10668 -9.89714 -9.82649 -9.28190 -8.87115 -8.71374 -8.43040 -7.50640 -6.94213 -5.83555 -3.15605 0.63812 1.07290 2.48591 2.56537 2.99584 3.34285 3.40576 3.42252 3.49194 3.66732 4.36882 4.39140 4.58932 4.68973 4.82633 4.84937 5.07145 5.10151 5.15086 5.33795 5.38276 5.47260 5.50525 5.51854 5.61223 5.71299 5.75001 5.85891 5.87329 5.95122 6.04167 6.17132 6.26690 6.29491 6.35852 6.54705 6.65439 6.73364 6.79828 6.80671 7.13036 7.18733 7.33237 7.53144 7.77536 7.91663 8.40336 8.97362 9.64728 10.57958 11.34127 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015448 B = 0.003459 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.082760 B = 8092.337137 C = 9400.427286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.117 4.117 3 C -0.202 4.202 4 C 0.050 3.950 5 C -0.093 4.093 6 C -0.099 4.099 7 C -0.162 4.162 8 C 0.567 3.433 9 O -0.553 6.553 10 N -0.702 5.702 11 C 0.121 3.879 12 C 0.126 3.874 13 H 0.049 0.951 14 C -0.161 4.161 15 C 0.154 3.846 16 N -0.602 5.602 17 C -0.218 4.218 18 H 0.081 0.919 19 C -0.004 4.004 20 N -0.915 5.915 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.125 3.875 26 N -0.354 5.354 27 C -0.053 4.053 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.404 0.596 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.254 0.746 42 H 0.174 0.826 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.304 -1.694 9.922 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.226 4.226 4 C -0.054 4.054 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.168 4.168 8 C 0.353 3.647 9 O -0.433 6.433 10 N -0.351 5.351 11 C -0.003 4.003 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.200 4.200 15 C 0.028 3.972 16 N -0.328 5.328 17 C -0.345 4.345 18 H 0.099 0.901 19 C -0.201 4.201 20 N -0.562 5.562 21 Si 0.735 3.265 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.002 3.998 26 N -0.018 5.018 27 C -0.180 4.180 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.240 0.760 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.191 0.809 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.234 -2.586 9.581 19.027 hybrid contribution -0.379 1.107 -0.813 1.425 sum -16.613 -1.479 8.767 18.842 Atomic orbital electron populations 1.20204 0.89464 1.02346 1.01954 1.19481 0.95809 0.92152 1.04692 1.20974 0.89541 0.98803 1.13330 1.18964 0.95645 0.81825 1.09006 1.20497 0.89120 1.00341 1.01219 1.22096 0.99069 0.91487 0.99246 1.20359 0.92855 0.93973 1.09574 1.17641 0.83184 0.86942 0.76910 1.90765 1.87521 1.13389 1.51621 1.45830 1.05346 1.11046 1.72916 1.21877 0.82342 0.94562 1.01543 1.22431 0.92114 0.92813 0.90832 0.93377 1.23678 0.96599 0.99760 1.00005 1.21977 0.87696 0.91349 0.96133 1.45670 1.02626 1.70387 1.14086 1.18853 0.89551 1.28439 0.97643 0.90137 1.24805 0.95785 1.00591 0.98955 1.69842 1.07834 1.46332 1.32154 0.86211 0.79471 0.79644 0.81201 1.21523 1.21635 1.20537 1.21683 0.83092 0.98169 0.96845 1.41431 1.05393 1.07090 1.47914 1.21691 0.79740 0.99995 1.16563 0.91531 0.91864 0.91562 0.83730 0.83524 0.84024 0.75969 0.91986 0.90871 0.92260 0.90173 0.91354 0.95521 0.93611 0.80882 0.81395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.36 36.00 0.37 -0.24 16 2 C -0.12 -1.25 6.10 -105.05 -0.64 -1.89 16 3 C -0.20 -2.34 10.91 -38.92 -0.42 -2.76 16 4 C 0.05 0.65 6.71 -83.94 -0.56 0.09 16 5 C -0.09 -1.13 10.09 -39.37 -0.40 -1.53 16 6 C -0.10 -1.29 9.73 -37.25 -0.36 -1.65 16 7 C -0.16 -2.37 5.98 -103.52 -0.62 -2.99 16 8 C 0.57 9.63 7.77 -12.49 -0.10 9.54 16 9 O -0.55 -10.76 16.28 5.27 0.09 -10.67 16 10 N -0.70 -11.78 5.29 -61.36 -0.32 -12.10 16 11 C 0.12 2.13 5.52 -4.04 -0.02 2.11 16 12 C 0.13 2.35 4.10 -72.40 -0.30 2.05 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 14 C -0.16 -2.85 8.03 -26.22 -0.21 -3.06 16 15 C 0.15 3.45 7.31 -8.52 -0.06 3.39 16 16 N -0.60 -14.33 3.65 -177.01 -0.65 -14.97 16 17 C -0.22 -5.73 10.54 -15.06 -0.16 -5.88 16 18 H 0.08 2.04 7.61 -52.49 -0.40 1.65 16 19 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 20 N -0.92 -26.55 11.62 55.49 0.65 -25.91 16 21 Si 0.90 21.73 29.56 -169.99 -5.02 16.70 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.12 1.69 10.45 -16.16 -0.17 1.52 16 26 N -0.35 -4.61 2.93 -60.50 -0.18 -4.79 16 27 C -0.05 -0.60 11.49 -16.46 -0.19 -0.78 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.14 1.69 6.58 -52.49 -0.35 1.34 16 34 H 0.40 6.44 6.57 -40.82 -0.27 6.17 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.41 8.12 -51.93 -0.42 0.98 16 39 H 0.07 1.71 7.31 -51.92 -0.38 1.33 16 40 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.17 2.13 7.56 -52.48 -0.40 1.73 16 43 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -32.39 362.62 -9.91 -42.30 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.00 Total: 6.27 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -3.94 Total: -2.30 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.50 Total: -57.77 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.39 -9.91 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038332842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.805 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds