Wall clock time and date at job start Fri Apr 10 2020 22:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39919 * 126.00105 * 2 1 4 4 C 1.38328 * 107.12483 * 180.02562 * 3 2 1 5 5 C 1.41354 * 131.72336 * 180.02562 * 4 3 2 6 6 C 1.35522 * 119.54332 * 179.73804 * 5 4 3 7 7 C 1.46451 * 118.96123 * 0.48184 * 6 5 4 8 8 C 1.47495 * 120.19792 * 179.77362 * 7 6 5 9 9 O 1.21608 * 120.00065 * 179.71882 * 8 7 6 10 10 N 1.34781 * 120.00212 * 359.72276 * 8 7 6 11 11 C 1.46495 * 120.00148 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47233 * 180.02562 * 11 10 8 13 13 H 1.08999 * 112.74125 * 56.23860 * 12 11 10 14 14 C 1.53494 * 113.47004 * 187.06338 * 12 11 10 15 15 C 1.53492 * 83.34554 * 140.84464 * 14 12 11 16 16 N 1.47061 * 87.98847 * 333.93398 * 15 14 12 17 17 C 1.36941 * 136.05912 * 207.15748 * 16 15 14 18 18 H 1.08000 * 119.99702 * 173.50465 * 17 16 15 19 19 C 1.38808 * 119.99932 * 353.51175 * 17 16 15 20 20 N 1.31617 * 120.00106 * 5.05088 * 19 17 16 21 21 Si 1.86803 * 120.00073 * 185.05512 * 19 17 16 22 22 H 1.48505 * 109.46897 * 94.98667 * 21 19 17 23 23 H 1.48500 * 109.47137 * 214.98259 * 21 19 17 24 24 H 1.48496 * 109.47074 * 334.98839 * 21 19 17 25 25 C 1.36302 * 119.60444 * 359.49940 * 7 6 5 26 26 N 1.36533 * 120.65052 * 0.25618 * 25 7 6 27 27 C 1.35283 * 126.00024 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47216 * 90.02756 * 1 2 3 29 29 H 1.09007 * 109.47096 * 210.02643 * 1 2 3 30 30 H 1.08996 * 109.46949 * 330.02303 * 1 2 3 31 31 H 1.07996 * 126.43418 * 359.96303 * 3 2 1 32 32 H 1.07993 * 120.22680 * 359.94945 * 5 4 3 33 33 H 1.07998 * 120.51954 * 180.23090 * 6 5 4 34 34 H 0.97003 * 119.99478 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.47390 * 300.00027 * 11 10 8 36 36 H 1.08999 * 109.47144 * 60.00214 * 11 10 8 37 37 H 1.09002 * 114.20544 * 254.43654 * 14 12 11 38 38 H 1.09001 * 114.20537 * 27.25648 * 14 12 11 39 39 H 1.09008 * 113.47195 * 219.14849 * 15 14 12 40 40 H 1.09007 * 113.47056 * 88.71147 * 15 14 12 41 41 H 0.96998 * 120.00306 * 179.97438 * 20 19 17 42 42 H 1.08007 * 119.67615 * 180.27394 * 25 7 6 43 43 H 1.07996 * 125.52019 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1320 0.0000 4 6 3.6383 0.6844 -0.0006 5 6 4.8698 1.3783 -0.0004 6 6 6.0307 0.6792 0.0043 7 6 5.9772 -0.7843 -0.0018 8 6 7.2241 -1.5723 -0.0020 9 8 7.1755 -2.7874 -0.0018 10 7 8.4173 -0.9456 -0.0022 11 6 9.6557 -1.7282 -0.0018 12 6 10.8575 -0.7813 -0.0015 13 1 10.8425 -0.0817 0.8342 14 6 12.2025 -1.5005 -0.1742 15 6 12.5362 -0.2861 -1.0516 16 7 11.0948 -0.1358 -1.3015 17 6 10.3161 0.3782 -2.3039 18 1 9.2431 0.2612 -2.2680 19 6 10.9060 1.0495 -3.3660 20 7 12.2175 1.1063 -3.4618 21 14 9.8386 1.8726 -4.6593 22 1 9.6593 3.3058 -4.3142 23 1 10.4950 1.7615 -5.9867 24 1 8.5130 1.2049 -4.7051 25 6 4.7684 -1.4139 -0.0016 26 7 3.6084 -0.6937 -0.0010 27 6 2.3021 -1.0945 -0.0005 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 2.0035 2.1616 -0.0006 32 1 4.8854 2.4582 -0.0005 33 1 6.9805 1.1933 0.0083 34 1 8.4561 0.0237 -0.0019 35 1 9.6884 -2.3564 0.8885 36 1 9.6884 -2.3571 -0.8915 37 1 12.7936 -1.5681 0.7391 38 1 12.1390 -2.4421 -0.7197 39 1 13.1075 -0.5396 -1.9447 40 1 12.9693 0.5454 -0.4955 41 1 12.6297 1.5751 -4.2042 42 1 4.7276 -2.4932 -0.0016 43 1 1.9598 -2.1187 -0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038332842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:17 Heat of formation + Delta-G solvation = 76.130068 kcal Electronic energy + Delta-G solvation = -25137.895462 eV Core-core repulsion = 21571.192698 eV Total energy + Delta-G solvation = -3566.702764 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.15117 -40.94556 -39.76792 -37.31075 -35.68097 -34.32435 -34.15666 -32.51033 -30.03495 -29.62331 -28.81845 -27.78621 -25.39386 -24.59149 -23.60204 -23.28413 -21.88780 -21.15663 -20.63560 -19.09291 -18.52261 -17.97672 -17.32256 -17.14896 -16.92328 -16.58944 -16.12117 -15.83874 -15.60179 -15.45040 -15.19905 -14.82148 -14.58155 -14.10370 -13.91765 -13.82302 -13.63825 -13.38145 -13.08663 -12.95536 -12.70538 -12.65559 -12.59261 -12.35055 -12.32035 -11.96839 -11.88408 -11.65446 -11.43173 -11.35999 -10.90917 -10.85629 -10.10713 -9.34721 -8.88337 -8.42890 -7.89760 -5.20318 -0.39052 0.12727 1.43437 1.44312 1.51845 1.52451 1.59395 1.97788 2.25183 2.46711 2.57626 3.31702 3.41433 3.44649 3.59113 3.77817 3.83167 3.93909 3.96506 4.10865 4.29320 4.34527 4.37497 4.53611 4.62805 4.68579 4.74074 4.78867 4.88750 4.95219 4.98798 5.01482 5.06288 5.09794 5.24312 5.24414 5.33320 5.39195 5.47344 5.58587 5.73786 5.89103 5.92617 5.96144 6.23123 6.45686 6.93305 7.08605 7.63526 8.63895 9.28685 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015448 B = 0.003459 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.082760 B = 8092.337137 C = 9400.427286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.122 4.122 3 C -0.202 4.202 4 C 0.018 3.982 5 C -0.087 4.087 6 C -0.116 4.116 7 C -0.180 4.180 8 C 0.568 3.432 9 O -0.583 6.583 10 N -0.701 5.701 11 C 0.129 3.871 12 C 0.133 3.867 13 H 0.071 0.929 14 C -0.134 4.134 15 C 0.145 3.855 16 N -0.630 5.630 17 C -0.207 4.207 18 H 0.086 0.914 19 C -0.067 4.067 20 N -0.952 5.952 21 Si 0.964 3.036 22 H -0.284 1.284 23 H -0.300 1.300 24 H -0.273 1.273 25 C 0.129 3.871 26 N -0.364 5.364 27 C -0.061 4.061 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.148 0.852 34 H 0.409 0.591 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.032 0.968 40 H 0.024 0.976 41 H 0.246 0.754 42 H 0.180 0.820 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.694 -1.536 11.279 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C -0.226 4.226 4 C -0.085 4.085 5 C -0.105 4.105 6 C -0.136 4.136 7 C -0.186 4.186 8 C 0.356 3.644 9 O -0.466 6.466 10 N -0.351 5.351 11 C 0.005 3.995 12 C 0.026 3.974 13 H 0.088 0.912 14 C -0.173 4.173 15 C 0.020 3.980 16 N -0.356 5.356 17 C -0.335 4.335 18 H 0.103 0.897 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.793 3.207 22 H -0.211 1.211 23 H -0.227 1.227 24 H -0.198 1.198 25 C 0.006 3.994 26 N -0.030 5.030 27 C -0.186 4.186 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.181 0.819 32 H 0.189 0.811 33 H 0.166 0.834 34 H 0.245 0.755 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.197 0.803 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -18.653 -2.420 10.975 21.777 hybrid contribution 0.215 1.016 -1.160 1.557 sum -18.438 -1.403 9.815 20.935 Atomic orbital electron populations 1.20285 0.87108 1.03567 1.02804 1.19957 0.97459 0.91589 1.03605 1.21395 0.89189 1.00119 1.11882 1.19358 0.96559 0.82101 1.10500 1.20804 0.88548 1.01536 0.99620 1.22133 0.99837 0.90793 1.00834 1.20200 0.92079 0.94654 1.11666 1.17943 0.83824 0.86699 0.75952 1.90737 1.87995 1.14702 1.53159 1.45798 1.05190 1.11209 1.72871 1.21693 0.82400 0.94174 1.01264 1.22576 0.93122 0.92734 0.88935 0.91218 1.23501 0.95858 0.97519 1.00415 1.21997 0.86812 0.93545 0.95679 1.45987 1.03430 1.70394 1.15802 1.19174 0.90089 1.26377 0.97908 0.89653 1.25519 0.96785 1.02368 1.01355 1.70013 1.09259 1.48057 1.32792 0.85272 0.78075 0.78854 0.78506 1.21073 1.22691 1.19827 1.21759 0.83268 0.98513 0.95863 1.41605 1.05690 1.07264 1.48415 1.22310 0.79134 1.01565 1.15640 0.90748 0.90508 0.90566 0.81854 0.81106 0.83422 0.75474 0.89772 0.93621 0.88110 0.90120 0.94994 0.95846 0.94517 0.80294 0.79056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.36 71.23 0.74 -0.20 16 2 C -0.12 -2.29 6.10 -20.14 -0.12 -2.41 16 3 C -0.20 -4.19 10.91 22.70 0.25 -3.94 16 4 C 0.02 0.45 6.71 38.99 0.26 0.71 16 5 C -0.09 -1.98 10.09 22.41 0.23 -1.75 16 6 C -0.12 -2.95 9.73 23.78 0.23 -2.71 16 7 C -0.18 -5.21 5.98 -19.15 -0.11 -5.33 16 8 C 0.57 19.16 7.77 86.68 0.67 19.84 16 9 O -0.58 -22.71 16.28 -4.06 -0.07 -22.77 16 10 N -0.70 -23.02 5.29 -466.30 -2.47 -25.49 16 11 C 0.13 4.40 5.52 86.38 0.48 4.87 16 12 C 0.13 4.72 4.10 41.79 0.17 4.89 16 13 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 14 C -0.13 -4.47 8.03 30.93 0.25 -4.22 16 15 C 0.15 6.53 7.31 83.18 0.61 7.14 16 16 N -0.63 -29.92 3.65 -713.92 -2.60 -32.52 16 17 C -0.21 -10.95 10.54 84.03 0.89 -10.06 16 18 H 0.09 4.32 7.61 -2.91 -0.02 4.30 16 19 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 20 N -0.95 -56.89 11.62 21.65 0.25 -56.63 16 21 Si 0.96 45.44 29.56 68.60 2.03 47.47 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 25 C 0.13 3.43 10.45 83.51 0.87 4.30 16 26 N -0.36 -9.02 2.93 -345.32 -1.01 -10.04 16 27 C -0.06 -1.23 11.49 83.26 0.96 -0.27 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.15 3.42 6.58 -2.91 -0.02 3.40 16 34 H 0.41 12.67 6.57 -92.71 -0.61 12.07 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.08 2.70 8.12 -2.39 -0.02 2.68 16 39 H 0.03 1.65 7.31 -2.38 -0.02 1.63 16 40 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 42 H 0.18 4.36 7.56 -2.91 -0.02 4.33 16 43 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -71.04 362.62 3.37 -67.67 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.42 Total: 24.77 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 6.83 Total: 7.55 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -5.83 Total: -124.68 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.07 Total: -22.77 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -71.04 3.37 -67.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038332842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.800 kcal (2) G-P(sol) polarization free energy of solvation -71.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds