Wall clock time and date at job start Fri Apr 10 2020 22:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38941 * 119.67337 * 2 1 4 4 C 1.36442 * 120.61416 * 180.02562 * 3 2 1 5 5 C 1.40097 * 119.83086 * 359.97438 * 4 3 2 6 6 C 1.41591 * 133.38179 * 179.97438 * 5 4 3 7 7 C 1.35869 * 107.72694 * 180.02562 * 6 5 4 8 8 C 1.47063 * 125.42700 * 179.97438 * 7 6 5 9 9 O 1.21643 * 119.99793 * 0.02913 * 8 7 6 10 10 N 1.34771 * 119.99479 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.09007 * 112.96750 * 53.32018 * 12 11 10 14 14 C 1.53946 * 113.77378 * 184.99939 * 12 11 10 15 15 C 1.53945 * 86.29134 * 137.90550 * 14 12 11 16 16 N 1.47581 * 86.11961 * 336.39637 * 15 14 12 17 17 C 1.36929 * 134.49167 * 204.63911 * 16 15 14 18 18 H 1.08003 * 120.00188 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00102 * 0.02562 * 17 16 15 20 20 N 1.31623 * 119.99809 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47396 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47369 * 119.99643 * 21 19 17 24 24 H 1.48500 * 109.47186 * 239.99558 * 21 19 17 25 25 N 1.38142 * 109.13745 * 0.25092 * 7 6 5 26 26 H 0.97003 * 125.59981 * 179.72821 * 25 7 6 27 27 C 1.37477 * 108.79223 * 359.58935 * 25 7 6 28 28 C 1.37664 * 119.67783 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47529 * 89.99892 * 1 2 3 30 30 H 1.08997 * 109.47065 * 210.00021 * 1 2 3 31 31 H 1.09005 * 109.47108 * 329.99410 * 1 2 3 32 32 H 1.07997 * 119.69548 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.08099 * 179.97438 * 4 3 2 34 34 H 1.08002 * 126.13401 * 359.97438 * 6 5 4 35 35 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 37 37 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 38 38 H 1.09003 * 113.74151 * 252.25618 * 14 12 11 39 39 H 1.09006 * 113.73813 * 23.45283 * 14 12 11 40 40 H 1.08999 * 113.76275 * 90.69660 * 15 14 12 41 41 H 1.08993 * 113.76995 * 221.97658 * 15 14 12 42 42 H 0.96998 * 119.99367 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.09258 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2072 0.0000 4 6 3.5591 1.2296 -0.0005 5 6 4.2758 0.0259 -0.0005 6 6 5.6576 -0.2832 -0.0014 7 6 5.7788 -1.6365 -0.0015 8 6 7.0484 -2.3787 -0.0029 9 8 8.1051 -1.7762 -0.0035 10 7 7.0409 -3.7264 -0.0033 11 6 8.3057 -4.4658 -0.0041 12 6 8.0180 -5.9685 -0.0038 13 1 7.3486 -6.2736 -0.8083 14 6 9.2798 -6.8419 0.1182 15 6 8.4649 -7.7070 1.0967 16 7 7.6426 -6.5020 1.3200 17 6 6.8498 -6.0576 2.3442 18 1 6.3389 -5.1098 2.2595 19 6 6.7036 -6.8246 3.4919 20 7 7.3266 -7.9794 3.5954 21 14 5.6216 -6.2186 4.8888 22 1 5.0373 -4.9021 4.5271 23 1 4.5297 -7.1959 5.1290 24 1 6.4378 -6.0756 6.1210 25 7 4.5193 -2.2040 -0.0064 26 1 4.3285 -3.1550 -0.0112 27 6 3.5809 -1.1993 -0.0001 28 6 2.1886 -1.1961 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6446 2.1365 -0.0004 33 1 4.0850 2.1729 -0.0009 34 1 6.4695 0.4289 -0.0028 35 1 6.1983 -4.2069 -0.0023 36 1 8.8783 -4.2053 -0.8943 37 1 8.8791 -4.2059 0.8857 38 1 9.5479 -7.3569 -0.8044 39 1 10.1243 -6.3307 0.5803 40 1 7.9259 -8.5239 0.6167 41 1 9.0273 -8.0262 1.9740 42 1 7.2241 -8.5155 4.3972 43 1 1.6448 -2.1292 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038562736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:27 Heat of formation + Delta-G solvation = 69.706541 kcal Electronic energy + Delta-G solvation = -25090.982929 eV Core-core repulsion = 21524.001619 eV Total energy + Delta-G solvation = -3566.981309 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61354 -39.32389 -38.00709 -37.22331 -34.30271 -32.74841 -32.25828 -30.82340 -29.59699 -28.31163 -27.88640 -26.36519 -23.54496 -23.44373 -22.29744 -21.68595 -20.93421 -20.00767 -19.23958 -18.41415 -16.93695 -16.58780 -15.97700 -15.53401 -15.45896 -15.00191 -14.97514 -14.35720 -14.18392 -13.95630 -13.85802 -13.53417 -13.50852 -13.32997 -12.99447 -12.76800 -12.32340 -11.98341 -11.83253 -11.51611 -11.32036 -11.20016 -11.09647 -11.02523 -10.81091 -10.61289 -10.20206 -9.90103 -9.88203 -9.80641 -9.49376 -8.88024 -8.79761 -8.27614 -7.79402 -6.97457 -5.84335 -3.17266 0.71080 1.51374 2.09882 2.86057 3.29315 3.32531 3.38256 3.40280 3.47708 3.76543 4.35415 4.54082 4.72347 4.78811 4.96637 5.04733 5.07110 5.24935 5.29307 5.31670 5.40216 5.49233 5.54056 5.56819 5.61670 5.71769 5.82540 5.86783 5.97422 5.99014 6.22602 6.32864 6.37261 6.39244 6.52425 6.54603 6.59355 6.61470 6.73452 6.98094 7.17059 7.29799 7.33301 7.52124 7.68641 7.90534 8.30157 8.96031 9.63184 10.51100 11.32206 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.003630 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.721408 B = 7712.669908 C = 9075.196971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.061 4.061 3 C -0.150 4.150 4 C -0.058 4.058 5 C -0.123 4.123 6 C -0.114 4.114 7 C 0.026 3.974 8 C 0.578 3.422 9 O -0.531 6.531 10 N -0.709 5.709 11 C 0.123 3.877 12 C 0.124 3.876 13 H 0.049 0.951 14 C -0.155 4.155 15 C 0.159 3.841 16 N -0.603 5.603 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.917 5.917 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.289 1.289 25 N -0.576 5.576 26 H 0.420 0.580 27 C 0.116 3.884 28 C -0.133 4.133 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.155 0.845 35 H 0.398 0.602 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.027 0.973 41 H 0.074 0.926 42 H 0.253 0.747 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.094 13.061 -10.338 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.062 4.062 3 C -0.169 4.169 4 C -0.077 4.077 5 C -0.127 4.127 6 C -0.141 4.141 7 C -0.084 4.084 8 C 0.364 3.636 9 O -0.408 6.408 10 N -0.359 5.359 11 C -0.001 4.001 12 C 0.017 3.983 13 H 0.067 0.933 14 C -0.194 4.194 15 C 0.034 3.966 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.094 0.906 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.216 1.216 25 N -0.180 5.180 26 H 0.258 0.742 27 C 0.006 3.994 28 C -0.154 4.154 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.172 0.828 35 H 0.231 0.769 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.406 13.262 -10.009 18.620 hybrid contribution -1.242 -0.618 0.890 1.648 sum -9.648 12.644 -9.119 18.333 Atomic orbital electron populations 1.20783 0.91000 1.02830 1.02286 1.19579 0.95749 0.92229 0.98660 1.20490 0.93914 0.97300 1.05191 1.20366 0.93631 0.96211 0.97492 1.18201 0.93074 0.92866 1.08580 1.20865 0.95317 0.93185 1.04709 1.20311 0.84146 0.93462 1.10458 1.17197 0.86994 0.82146 0.77311 1.90818 1.30631 1.68608 1.50719 1.45885 1.10894 1.05436 1.73642 1.21856 0.84677 0.91761 1.01840 1.22519 0.94853 0.90748 0.90203 0.93348 1.23770 0.96898 0.99069 0.99635 1.22197 0.89797 0.89329 0.95306 1.46074 1.55775 1.19405 1.11648 1.18929 1.21097 1.02129 0.92820 0.90556 1.24751 1.00566 0.96716 0.98123 1.69826 1.45837 1.12669 1.28032 0.86145 0.79890 0.77673 0.82626 1.20627 1.21731 1.21566 1.42013 1.04154 1.08310 1.63525 0.74183 1.18294 0.90780 0.87709 1.02636 1.19913 0.89782 0.98441 1.07223 0.91145 0.91556 0.91419 0.86032 0.85772 0.82752 0.76852 0.91716 0.90536 0.92721 0.90389 0.95545 0.90763 0.93654 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.99 36.01 0.36 -0.45 16 2 C -0.06 -0.61 5.88 -104.57 -0.61 -1.23 16 3 C -0.15 -1.49 9.61 -39.97 -0.38 -1.87 16 4 C -0.06 -0.65 10.06 -39.53 -0.40 -1.04 16 5 C -0.12 -1.65 6.16 -106.93 -0.66 -2.30 16 6 C -0.11 -1.64 10.53 -39.15 -0.41 -2.05 16 7 C 0.03 0.39 6.97 -82.29 -0.57 -0.18 16 8 C 0.58 9.95 7.80 -12.68 -0.10 9.85 16 9 O -0.53 -10.59 16.84 5.24 0.09 -10.50 16 10 N -0.71 -11.70 5.52 -61.50 -0.34 -12.04 16 11 C 0.12 2.15 5.54 -4.04 -0.02 2.13 16 12 C 0.12 2.30 4.33 -66.86 -0.29 2.01 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C -0.15 -2.73 7.86 -25.80 -0.20 -2.94 16 15 C 0.16 3.55 7.51 -2.97 -0.02 3.53 16 16 N -0.60 -14.27 3.57 -170.73 -0.61 -14.88 16 17 C -0.22 -5.84 10.51 -15.06 -0.16 -6.00 16 18 H 0.08 1.94 7.80 -52.48 -0.41 1.53 16 19 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 20 N -0.92 -26.49 11.39 55.49 0.63 -25.86 16 21 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 N -0.58 -7.61 6.07 -7.35 -0.04 -7.65 16 26 H 0.42 4.74 8.12 -40.82 -0.33 4.41 16 27 C 0.12 1.54 7.25 -83.98 -0.61 0.93 16 28 C -0.13 -1.51 9.70 -39.42 -0.38 -1.89 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.40 6.06 7.53 -40.82 -0.31 5.76 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.86 7.16 -51.93 -0.37 1.49 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -32.25 363.74 -10.42 -42.67 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.04 Total: 7.66 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -4.56 Total: -1.74 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.36 Total: -60.43 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.25 -10.42 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038562736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.375 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds