Wall clock time and date at job start Fri Apr 10 2020 22:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38941 * 119.67337 * 2 1 4 4 C 1.36442 * 120.61416 * 180.02562 * 3 2 1 5 5 C 1.40097 * 119.83086 * 359.97438 * 4 3 2 6 6 C 1.41591 * 133.38179 * 179.97438 * 5 4 3 7 7 C 1.35869 * 107.72694 * 180.02562 * 6 5 4 8 8 C 1.47063 * 125.42700 * 179.97438 * 7 6 5 9 9 O 1.21643 * 119.99793 * 0.02913 * 8 7 6 10 10 N 1.34771 * 119.99479 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.09007 * 112.96750 * 53.32018 * 12 11 10 14 14 C 1.53946 * 113.77378 * 184.99939 * 12 11 10 15 15 C 1.53945 * 86.29134 * 137.90550 * 14 12 11 16 16 N 1.47581 * 86.11961 * 336.39637 * 15 14 12 17 17 C 1.36929 * 134.49167 * 204.63911 * 16 15 14 18 18 H 1.08003 * 120.00188 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00102 * 0.02562 * 17 16 15 20 20 N 1.31623 * 119.99809 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47396 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47369 * 119.99643 * 21 19 17 24 24 H 1.48500 * 109.47186 * 239.99558 * 21 19 17 25 25 N 1.38142 * 109.13745 * 0.25092 * 7 6 5 26 26 H 0.97003 * 125.59981 * 179.72821 * 25 7 6 27 27 C 1.37477 * 108.79223 * 359.58935 * 25 7 6 28 28 C 1.37664 * 119.67783 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47529 * 89.99892 * 1 2 3 30 30 H 1.08997 * 109.47065 * 210.00021 * 1 2 3 31 31 H 1.09005 * 109.47108 * 329.99410 * 1 2 3 32 32 H 1.07997 * 119.69548 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.08099 * 179.97438 * 4 3 2 34 34 H 1.08002 * 126.13401 * 359.97438 * 6 5 4 35 35 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 37 37 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 38 38 H 1.09003 * 113.74151 * 252.25618 * 14 12 11 39 39 H 1.09006 * 113.73813 * 23.45283 * 14 12 11 40 40 H 1.08999 * 113.76275 * 90.69660 * 15 14 12 41 41 H 1.08993 * 113.76995 * 221.97658 * 15 14 12 42 42 H 0.96998 * 119.99367 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.09258 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.2072 0.0000 4 6 3.5591 1.2296 -0.0005 5 6 4.2758 0.0259 -0.0005 6 6 5.6576 -0.2832 -0.0014 7 6 5.7788 -1.6365 -0.0015 8 6 7.0484 -2.3787 -0.0029 9 8 8.1051 -1.7762 -0.0035 10 7 7.0409 -3.7264 -0.0033 11 6 8.3057 -4.4658 -0.0041 12 6 8.0180 -5.9685 -0.0038 13 1 7.3486 -6.2736 -0.8083 14 6 9.2798 -6.8419 0.1182 15 6 8.4649 -7.7070 1.0967 16 7 7.6426 -6.5020 1.3200 17 6 6.8498 -6.0576 2.3442 18 1 6.3389 -5.1098 2.2595 19 6 6.7036 -6.8246 3.4919 20 7 7.3266 -7.9794 3.5954 21 14 5.6216 -6.2186 4.8888 22 1 5.0373 -4.9021 4.5271 23 1 4.5297 -7.1959 5.1290 24 1 6.4378 -6.0756 6.1210 25 7 4.5193 -2.2040 -0.0064 26 1 4.3285 -3.1550 -0.0112 27 6 3.5809 -1.1993 -0.0001 28 6 2.1886 -1.1961 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6446 2.1365 -0.0004 33 1 4.0850 2.1729 -0.0009 34 1 6.4695 0.4289 -0.0028 35 1 6.1983 -4.2069 -0.0023 36 1 8.8783 -4.2053 -0.8943 37 1 8.8791 -4.2059 0.8857 38 1 9.5479 -7.3569 -0.8044 39 1 10.1243 -6.3307 0.5803 40 1 7.9259 -8.5239 0.6167 41 1 9.0273 -8.0262 1.9740 42 1 7.2241 -8.5155 4.3972 43 1 1.6448 -2.1292 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038562736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:27 Heat of formation + Delta-G solvation = 49.712465 kcal Electronic energy + Delta-G solvation = -25091.849937 eV Core-core repulsion = 21524.001619 eV Total energy + Delta-G solvation = -3567.848318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.61632 -40.67278 -39.57216 -38.15372 -35.73284 -34.25449 -33.60988 -31.76753 -30.54353 -29.95530 -29.45920 -27.32795 -25.32422 -24.68087 -23.47169 -22.90362 -21.85776 -21.31694 -20.77980 -19.65443 -18.50790 -17.78007 -17.18579 -17.16848 -16.60388 -16.46689 -16.02030 -15.77708 -15.45341 -15.38100 -14.86760 -14.79211 -14.69703 -14.50799 -14.13115 -13.68865 -13.62401 -13.33029 -13.01371 -12.92122 -12.74717 -12.62129 -12.59870 -12.32405 -12.14139 -11.91790 -11.82768 -11.61293 -11.50035 -11.11569 -10.87501 -10.84435 -10.21066 -9.19469 -8.91485 -8.74565 -7.90800 -5.22053 -0.27737 0.64591 1.03092 1.38503 1.41175 1.48259 1.82699 2.03375 2.24031 2.42676 2.88830 3.28550 3.34608 3.61880 3.71325 3.96446 3.99471 4.06316 4.12219 4.29525 4.31596 4.37736 4.46396 4.58398 4.66419 4.71013 4.83151 4.84827 4.89562 4.93699 5.01163 5.04977 5.05940 5.23957 5.29857 5.31095 5.48387 5.53799 5.58849 5.65131 5.72498 5.72688 5.95400 6.10869 6.29939 6.44307 6.91997 6.97492 7.61880 8.56689 9.26080 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.003630 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.721408 B = 7712.669908 C = 9075.196971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.055 4.055 3 C -0.149 4.149 4 C -0.064 4.064 5 C -0.147 4.147 6 C -0.114 4.114 7 C 0.001 3.999 8 C 0.580 3.420 9 O -0.565 6.565 10 N -0.706 5.706 11 C 0.131 3.869 12 C 0.132 3.868 13 H 0.073 0.927 14 C -0.130 4.130 15 C 0.149 3.851 16 N -0.629 5.629 17 C -0.212 4.212 18 H 0.082 0.918 19 C -0.067 4.067 20 N -0.951 5.951 21 Si 0.963 3.037 22 H -0.271 1.271 23 H -0.292 1.292 24 H -0.298 1.298 25 N -0.572 5.572 26 H 0.425 0.575 27 C 0.106 3.894 28 C -0.151 4.151 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.404 0.596 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.038 0.962 42 H 0.246 0.754 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.090 14.822 -11.775 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.056 4.056 3 C -0.168 4.168 4 C -0.083 4.083 5 C -0.152 4.152 6 C -0.141 4.141 7 C -0.108 4.108 8 C 0.367 3.633 9 O -0.445 6.445 10 N -0.355 5.355 11 C 0.007 3.993 12 C 0.026 3.974 13 H 0.090 0.910 14 C -0.168 4.168 15 C 0.024 3.976 16 N -0.356 5.356 17 C -0.341 4.341 18 H 0.099 0.901 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.793 3.207 22 H -0.196 1.196 23 H -0.219 1.219 24 H -0.226 1.226 25 N -0.177 5.177 26 H 0.265 0.735 27 C -0.005 4.005 28 C -0.171 4.171 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.239 0.761 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.423 15.029 -11.484 21.596 hybrid contribution -0.715 -1.052 1.255 1.787 sum -11.138 13.977 -10.229 20.593 Atomic orbital electron populations 1.20863 0.88709 1.03857 1.03411 1.20045 0.97454 0.91818 0.96314 1.20896 0.93624 0.98551 1.03718 1.20688 0.94371 0.96238 0.96989 1.18439 0.92656 0.94080 1.10000 1.21060 0.96229 0.93094 1.03750 1.20011 0.84062 0.93648 1.13109 1.17417 0.87343 0.82115 0.76390 1.90786 1.32013 1.69205 1.52471 1.45818 1.10863 1.05386 1.73418 1.21675 0.85013 0.91148 1.01510 1.22694 0.95279 0.91276 0.88176 0.90963 1.23566 0.96009 0.97408 0.99844 1.22173 0.90403 0.89684 0.95314 1.46415 1.55437 1.20436 1.13305 1.19259 1.19697 1.01775 0.93364 0.90069 1.25447 1.02633 0.97367 1.00527 1.69993 1.47902 1.13927 1.28244 0.85238 0.78236 0.77446 0.79810 1.19589 1.21865 1.22574 1.41923 1.03531 1.08700 1.63580 0.73508 1.18636 0.91570 0.87602 1.02681 1.20202 0.89100 0.99813 1.08015 0.89815 0.91099 0.89903 0.83093 0.83827 0.82501 0.76114 0.89450 0.93478 0.88635 0.90265 0.95882 0.94311 0.94530 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.99 71.24 0.71 -0.49 16 2 C -0.05 -0.94 5.88 -19.83 -0.12 -1.06 16 3 C -0.15 -2.49 9.61 22.02 0.21 -2.28 16 4 C -0.06 -1.29 10.06 22.30 0.22 -1.07 16 5 C -0.15 -3.82 6.16 -21.36 -0.13 -3.95 16 6 C -0.11 -3.28 10.53 22.55 0.24 -3.04 16 7 C 0.00 0.04 6.97 39.91 0.28 0.32 16 8 C 0.58 20.00 7.80 86.56 0.68 20.68 16 9 O -0.57 -22.81 16.84 -4.17 -0.07 -22.88 16 10 N -0.71 -22.84 5.52 -466.72 -2.58 -25.42 16 11 C 0.13 4.44 5.54 86.38 0.48 4.91 16 12 C 0.13 4.64 4.33 45.09 0.20 4.83 16 13 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 14 C -0.13 -4.32 7.86 31.25 0.25 -4.07 16 15 C 0.15 6.71 7.51 86.48 0.65 7.36 16 16 N -0.63 -29.68 3.57 -694.07 -2.48 -32.16 16 17 C -0.21 -11.21 10.51 84.04 0.88 -10.32 16 18 H 0.08 4.10 7.80 -2.91 -0.02 4.08 16 19 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 20 N -0.95 -56.58 11.39 21.65 0.25 -56.33 16 21 Si 0.96 45.79 29.55 68.60 2.03 47.82 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 25 N -0.57 -14.87 6.07 -177.18 -1.08 -15.95 16 26 H 0.43 9.41 8.12 -92.71 -0.75 8.66 16 27 C 0.11 2.69 7.25 39.14 0.28 2.97 16 28 C -0.15 -3.13 9.70 22.37 0.22 -2.92 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 31 H 0.08 0.67 8.08 -2.38 -0.02 0.65 16 32 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.16 4.23 8.06 -2.91 -0.02 4.20 16 35 H 0.40 11.98 7.53 -92.71 -0.70 11.28 16 36 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.08 2.64 8.10 -2.38 -0.02 2.62 16 40 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.04 2.00 7.16 -2.39 -0.02 1.98 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -71.14 363.74 1.17 -69.97 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.41 Total: 26.35 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.51 Total: 8.60 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -5.89 Total: -129.86 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.07 Total: -22.88 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -71.14 1.17 -69.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038562736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.678 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds