Wall clock time and date at job start Fri Apr 10 2020 22:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38942 * 119.67280 * 2 1 4 4 C 1.36434 * 120.61530 * 179.97438 * 3 2 1 5 5 C 1.40103 * 119.83042 * 0.02562 * 4 3 2 6 6 C 1.41595 * 133.37695 * 180.29895 * 5 4 3 7 7 C 1.35864 * 107.72072 * 180.13424 * 6 5 4 8 8 C 1.47058 * 125.42901 * 179.84453 * 7 6 5 9 9 O 1.21651 * 120.00000 * 359.70108 * 8 7 6 10 10 N 1.34775 * 120.00095 * 179.69843 * 8 7 6 11 11 C 1.46505 * 119.99894 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47137 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.73718 * 303.76024 * 12 11 10 14 14 C 1.53487 * 113.46697 * 172.94014 * 12 11 10 15 15 C 1.53502 * 83.34323 * 219.15440 * 14 12 11 16 16 N 1.47065 * 113.46330 * 74.50244 * 12 11 10 17 17 C 1.36934 * 136.06235 * 321.86970 * 16 12 11 18 18 H 1.07999 * 120.00193 * 359.97438 * 17 16 12 19 19 C 1.38816 * 120.00073 * 179.97438 * 17 16 12 20 20 N 1.31616 * 119.99941 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99877 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47021 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46964 * 119.99922 * 21 19 17 24 24 H 1.48502 * 109.46929 * 240.00131 * 21 19 17 25 25 N 1.38146 * 109.14162 * 359.58880 * 7 6 5 26 26 H 0.97006 * 125.60723 * 180.28663 * 25 7 6 27 27 C 1.37471 * 108.79070 * 0.26082 * 25 7 6 28 28 C 1.37665 * 119.67821 * 179.97438 * 2 1 3 29 29 H 1.08990 * 109.47072 * 270.01808 * 1 2 3 30 30 H 1.09001 * 109.47121 * 30.02531 * 1 2 3 31 31 H 1.09004 * 109.46581 * 150.01724 * 1 2 3 32 32 H 1.08000 * 119.69227 * 359.96069 * 3 2 1 33 33 H 1.08010 * 120.08919 * 180.02562 * 4 3 2 34 34 H 1.07997 * 126.13896 * 359.97438 * 6 5 4 35 35 H 0.97000 * 120.00539 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47105 * 60.00277 * 11 10 8 37 37 H 1.08999 * 109.47259 * 299.99592 * 11 10 8 38 38 H 1.08997 * 114.21045 * 332.73743 * 14 12 11 39 39 H 1.09000 * 114.21057 * 105.56674 * 14 12 11 40 40 H 1.09005 * 113.46519 * 271.28629 * 15 14 12 41 41 H 1.09005 * 113.46791 * 140.85026 * 15 14 12 42 42 H 0.97002 * 119.99782 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.09155 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5590 1.2297 0.0005 5 6 4.2758 0.0259 0.0005 6 6 5.6577 -0.2831 0.0064 7 6 5.7788 -1.6363 0.0000 8 6 7.0484 -2.3785 -0.0003 9 8 8.1052 -1.7760 0.0000 10 7 7.0411 -3.7262 -0.0008 11 6 8.3059 -4.4656 -0.0005 12 6 8.0182 -5.9684 -0.0006 13 1 7.3901 -6.2771 0.8350 14 6 9.2756 -6.8314 -0.1733 15 6 8.3510 -7.6864 -1.0510 16 7 7.5543 -6.4757 -1.3007 17 6 6.7389 -6.0212 -2.3025 18 1 6.2642 -5.0551 -2.2160 19 6 6.5225 -6.8024 -3.4295 20 7 7.1007 -7.9801 -3.5348 21 14 5.4096 -6.1826 -4.7958 22 1 4.8847 -4.8408 -4.4364 23 1 6.1828 -6.0898 -6.0603 24 1 4.2761 -7.1249 -4.9767 25 7 4.5194 -2.2039 -0.0004 26 1 4.3285 -3.1550 -0.0004 27 6 3.5809 -1.1993 -0.0001 28 6 2.1887 -1.1961 0.0005 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3632 -0.8902 -0.5136 32 1 1.6445 2.1365 -0.0006 33 1 4.0851 2.1730 0.0009 34 1 6.4695 0.4291 0.0120 35 1 6.1985 -4.2068 -0.0006 36 1 8.8784 -4.2058 0.8898 37 1 8.8792 -4.2051 -0.8902 38 1 10.0824 -6.3418 -0.7187 39 1 9.6076 -7.3254 0.7398 40 1 7.8121 -8.4537 -0.4951 41 1 8.8390 -8.0768 -1.9441 42 1 6.9497 -8.5257 -4.3225 43 1 1.6449 -2.1292 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038562739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:31 Heat of formation + Delta-G solvation = 73.143661 kcal Electronic energy + Delta-G solvation = -25141.099569 eV Core-core repulsion = 21574.267304 eV Total energy + Delta-G solvation = -3566.832265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60303 -39.34933 -38.17079 -37.22058 -34.28896 -32.73749 -32.30481 -30.81390 -29.58556 -28.31683 -27.92421 -26.33913 -23.56779 -23.48784 -22.23240 -21.62320 -20.92121 -19.99334 -19.33147 -18.42579 -16.93272 -16.60296 -15.96038 -15.53923 -15.44618 -14.99012 -14.97295 -14.34996 -14.17165 -13.95160 -13.87117 -13.52438 -13.49022 -13.31573 -12.97866 -12.75864 -12.31489 -12.00731 -11.82273 -11.62525 -11.31154 -11.20968 -11.07723 -11.01538 -10.85538 -10.64573 -10.17509 -9.91670 -9.89759 -9.87157 -9.34607 -8.90725 -8.77371 -8.26551 -7.78386 -6.99424 -5.86326 -3.19442 0.72100 1.52399 2.10865 2.87391 3.29923 3.32291 3.37130 3.39137 3.48716 3.77501 4.34259 4.55128 4.73212 4.80334 4.97714 5.07355 5.11300 5.26015 5.29244 5.31882 5.41076 5.47262 5.50765 5.57686 5.62474 5.72784 5.81665 5.87719 5.98306 6.00229 6.23027 6.31700 6.38187 6.40297 6.51109 6.54338 6.59953 6.62404 6.73024 6.99125 7.13443 7.30315 7.31338 7.49255 7.70172 7.88035 8.31359 8.92885 9.60668 10.53151 11.30642 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.003712 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.358440 B = 7540.407202 C = 8954.799022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.061 4.061 3 C -0.150 4.150 4 C -0.058 4.058 5 C -0.123 4.123 6 C -0.114 4.114 7 C 0.026 3.974 8 C 0.578 3.422 9 O -0.532 6.532 10 N -0.709 5.709 11 C 0.121 3.879 12 C 0.126 3.874 13 H 0.048 0.952 14 C -0.160 4.160 15 C 0.151 3.849 16 N -0.602 5.602 17 C -0.218 4.218 18 H 0.078 0.922 19 C -0.004 4.004 20 N -0.915 5.915 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.290 1.290 25 N -0.576 5.576 26 H 0.420 0.580 27 C 0.116 3.884 28 C -0.133 4.133 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.155 0.845 35 H 0.398 0.602 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.254 0.746 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 13.003 10.073 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.062 4.062 3 C -0.169 4.169 4 C -0.077 4.077 5 C -0.127 4.127 6 C -0.141 4.141 7 C -0.084 4.084 8 C 0.363 3.637 9 O -0.409 6.409 10 N -0.358 5.358 11 C -0.003 4.003 12 C 0.018 3.982 13 H 0.065 0.935 14 C -0.199 4.199 15 C 0.026 3.974 16 N -0.328 5.328 17 C -0.345 4.345 18 H 0.096 0.904 19 C -0.201 4.201 20 N -0.562 5.562 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.215 1.215 24 H -0.217 1.217 25 N -0.180 5.180 26 H 0.258 0.742 27 C 0.006 3.994 28 C -0.153 4.153 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.172 0.828 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.926 13.211 9.728 18.220 hybrid contribution -1.238 -0.625 -0.844 1.623 sum -9.164 12.586 8.885 17.925 Atomic orbital electron populations 1.20782 0.91004 1.02826 1.02282 1.19579 0.95746 0.92228 0.98680 1.20486 0.93915 0.97295 1.05203 1.20364 0.93630 0.96205 0.97515 1.18202 0.93073 0.92864 1.08584 1.20861 0.95311 0.93180 1.04756 1.20309 0.84156 0.93460 1.10435 1.17205 0.86992 0.82164 0.77316 1.90817 1.30628 1.68630 1.50789 1.45887 1.10936 1.05412 1.73558 1.21903 0.84697 0.91970 1.01734 1.22434 0.94341 0.90650 0.90767 0.93468 1.23657 0.96646 0.99605 0.99993 1.22036 0.89345 0.89749 0.96304 1.45678 1.55645 1.17052 1.14399 1.18835 1.20672 1.00510 0.94476 0.90391 1.24768 1.00586 0.96498 0.98280 1.69831 1.46418 1.10922 1.28993 0.86133 0.80035 0.77724 0.82380 1.20575 1.21517 1.21692 1.42019 1.04151 1.08330 1.63473 0.74152 1.18293 0.90782 0.87712 1.02637 1.19915 0.89789 0.98445 1.07194 0.91149 0.91424 0.91556 0.86039 0.85780 0.82762 0.76773 0.91831 0.90664 0.90087 0.92241 0.95699 0.90913 0.93624 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.99 36.01 0.36 -0.46 16 2 C -0.06 -0.62 5.88 -104.57 -0.61 -1.23 16 3 C -0.15 -1.50 9.61 -39.97 -0.38 -1.89 16 4 C -0.06 -0.65 10.06 -39.53 -0.40 -1.05 16 5 C -0.12 -1.66 6.16 -106.93 -0.66 -2.32 16 6 C -0.11 -1.66 10.53 -39.15 -0.41 -2.07 16 7 C 0.03 0.40 6.97 -82.29 -0.57 -0.17 16 8 C 0.58 10.02 7.80 -12.68 -0.10 9.92 16 9 O -0.53 -10.65 16.84 5.23 0.09 -10.56 16 10 N -0.71 -11.81 5.33 -61.49 -0.33 -12.14 16 11 C 0.12 2.12 5.52 -4.04 -0.02 2.10 16 12 C 0.13 2.33 4.10 -72.41 -0.30 2.03 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 14 C -0.16 -2.81 8.03 -26.22 -0.21 -3.02 16 15 C 0.15 3.37 7.39 -8.51 -0.06 3.30 16 16 N -0.60 -14.21 3.65 -177.01 -0.65 -14.86 16 17 C -0.22 -5.69 10.55 -15.06 -0.16 -5.85 16 18 H 0.08 1.96 7.50 -52.49 -0.39 1.57 16 19 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 20 N -0.92 -26.40 11.51 55.49 0.64 -25.76 16 21 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 N -0.58 -7.72 6.07 -7.36 -0.04 -7.77 16 26 H 0.42 4.87 8.12 -40.82 -0.33 4.54 16 27 C 0.12 1.56 7.25 -83.98 -0.61 0.95 16 28 C -0.13 -1.53 9.71 -39.42 -0.38 -1.91 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 34 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.40 6.21 7.43 -40.82 -0.30 5.90 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -32.09 363.18 -10.48 -42.58 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.02 Total: 8.18 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -4.62 Total: -1.89 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.38 Total: -60.53 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.09 -10.48 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038562739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.721 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds