Wall clock time and date at job start Fri Apr 10 2020 22:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38942 * 119.67280 * 2 1 4 4 C 1.36434 * 120.61530 * 179.97438 * 3 2 1 5 5 C 1.40103 * 119.83042 * 0.02562 * 4 3 2 6 6 C 1.41595 * 133.37695 * 180.29895 * 5 4 3 7 7 C 1.35864 * 107.72072 * 180.13424 * 6 5 4 8 8 C 1.47058 * 125.42901 * 179.84453 * 7 6 5 9 9 O 1.21651 * 120.00000 * 359.70108 * 8 7 6 10 10 N 1.34775 * 120.00095 * 179.69843 * 8 7 6 11 11 C 1.46505 * 119.99894 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47137 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.73718 * 303.76024 * 12 11 10 14 14 C 1.53487 * 113.46697 * 172.94014 * 12 11 10 15 15 C 1.53502 * 83.34323 * 219.15440 * 14 12 11 16 16 N 1.47065 * 113.46330 * 74.50244 * 12 11 10 17 17 C 1.36934 * 136.06235 * 321.86970 * 16 12 11 18 18 H 1.07999 * 120.00193 * 359.97438 * 17 16 12 19 19 C 1.38816 * 120.00073 * 179.97438 * 17 16 12 20 20 N 1.31616 * 119.99941 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99877 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47021 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46964 * 119.99922 * 21 19 17 24 24 H 1.48502 * 109.46929 * 240.00131 * 21 19 17 25 25 N 1.38146 * 109.14162 * 359.58880 * 7 6 5 26 26 H 0.97006 * 125.60723 * 180.28663 * 25 7 6 27 27 C 1.37471 * 108.79070 * 0.26082 * 25 7 6 28 28 C 1.37665 * 119.67821 * 179.97438 * 2 1 3 29 29 H 1.08990 * 109.47072 * 270.01808 * 1 2 3 30 30 H 1.09001 * 109.47121 * 30.02531 * 1 2 3 31 31 H 1.09004 * 109.46581 * 150.01724 * 1 2 3 32 32 H 1.08000 * 119.69227 * 359.96069 * 3 2 1 33 33 H 1.08010 * 120.08919 * 180.02562 * 4 3 2 34 34 H 1.07997 * 126.13896 * 359.97438 * 6 5 4 35 35 H 0.97000 * 120.00539 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47105 * 60.00277 * 11 10 8 37 37 H 1.08999 * 109.47259 * 299.99592 * 11 10 8 38 38 H 1.08997 * 114.21045 * 332.73743 * 14 12 11 39 39 H 1.09000 * 114.21057 * 105.56674 * 14 12 11 40 40 H 1.09005 * 113.46519 * 271.28629 * 15 14 12 41 41 H 1.09005 * 113.46791 * 140.85026 * 15 14 12 42 42 H 0.97002 * 119.99782 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.09155 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5590 1.2297 0.0005 5 6 4.2758 0.0259 0.0005 6 6 5.6577 -0.2831 0.0064 7 6 5.7788 -1.6363 0.0000 8 6 7.0484 -2.3785 -0.0003 9 8 8.1052 -1.7760 0.0000 10 7 7.0411 -3.7262 -0.0008 11 6 8.3059 -4.4656 -0.0005 12 6 8.0182 -5.9684 -0.0006 13 1 7.3901 -6.2771 0.8350 14 6 9.2756 -6.8314 -0.1733 15 6 8.3510 -7.6864 -1.0510 16 7 7.5543 -6.4757 -1.3007 17 6 6.7389 -6.0212 -2.3025 18 1 6.2642 -5.0551 -2.2160 19 6 6.5225 -6.8024 -3.4295 20 7 7.1007 -7.9801 -3.5348 21 14 5.4096 -6.1826 -4.7958 22 1 4.8847 -4.8408 -4.4364 23 1 6.1828 -6.0898 -6.0603 24 1 4.2761 -7.1249 -4.9767 25 7 4.5194 -2.2039 -0.0004 26 1 4.3285 -3.1550 -0.0004 27 6 3.5809 -1.1993 -0.0001 28 6 2.1887 -1.1961 0.0005 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3632 -0.8902 -0.5136 32 1 1.6445 2.1365 -0.0006 33 1 4.0851 2.1730 0.0009 34 1 6.4695 0.4291 0.0120 35 1 6.1985 -4.2068 -0.0006 36 1 8.8784 -4.2058 0.8898 37 1 8.8792 -4.2051 -0.8902 38 1 10.0824 -6.3418 -0.7187 39 1 9.6076 -7.3254 0.7398 40 1 7.8121 -8.4537 -0.4951 41 1 8.8390 -8.0768 -1.9441 42 1 6.9497 -8.5257 -4.3225 43 1 1.6449 -2.1292 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038562739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:30 Heat of formation + Delta-G solvation = 53.278050 kcal Electronic energy + Delta-G solvation = -25141.961006 eV Core-core repulsion = 21574.267304 eV Total energy + Delta-G solvation = -3567.693702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61656 -40.72585 -39.71821 -38.15441 -35.72046 -34.29695 -33.60974 -31.76655 -30.54089 -30.01294 -29.43420 -27.30999 -25.43091 -24.61396 -23.40452 -22.88135 -21.85672 -21.33811 -20.86633 -19.65660 -18.51947 -17.78467 -17.18817 -17.16104 -16.60487 -16.46162 -16.01827 -15.78943 -15.43890 -15.37358 -14.85113 -14.78959 -14.68572 -14.50684 -14.13160 -13.69344 -13.64789 -13.38268 -13.03550 -12.92184 -12.75873 -12.63599 -12.59997 -12.34655 -12.14169 -11.91821 -11.82780 -11.67371 -11.48733 -11.00472 -10.87970 -10.84383 -10.19676 -9.19469 -8.92816 -8.74609 -7.91983 -5.23366 -0.27672 0.64629 1.03119 1.38539 1.41092 1.48311 1.83028 2.03964 2.24086 2.41893 2.88837 3.30266 3.38583 3.62184 3.71239 3.91045 3.99294 4.07436 4.12222 4.29529 4.30649 4.37793 4.46338 4.59266 4.65159 4.69940 4.83204 4.85138 4.89538 4.93652 5.01028 5.04145 5.05704 5.24200 5.28930 5.30604 5.48608 5.53800 5.55876 5.65210 5.71700 5.72490 5.93800 6.10914 6.29902 6.44174 6.89572 6.97505 7.59955 8.59839 9.25641 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.003712 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.358440 B = 7540.407202 C = 8954.799022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.055 4.055 3 C -0.149 4.149 4 C -0.064 4.064 5 C -0.147 4.147 6 C -0.114 4.114 7 C 0.001 3.999 8 C 0.580 3.420 9 O -0.565 6.565 10 N -0.706 5.706 11 C 0.129 3.871 12 C 0.133 3.867 13 H 0.071 0.929 14 C -0.133 4.133 15 C 0.142 3.858 16 N -0.629 5.629 17 C -0.207 4.207 18 H 0.084 0.916 19 C -0.066 4.066 20 N -0.950 5.950 21 Si 0.964 3.036 22 H -0.270 1.270 23 H -0.298 1.298 24 H -0.291 1.291 25 N -0.573 5.573 26 H 0.425 0.575 27 C 0.105 3.895 28 C -0.151 4.151 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.158 0.842 35 H 0.404 0.596 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.024 0.976 41 H 0.036 0.964 42 H 0.246 0.754 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.460 14.823 11.481 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.056 4.056 3 C -0.168 4.168 4 C -0.083 4.083 5 C -0.152 4.152 6 C -0.141 4.141 7 C -0.109 4.109 8 C 0.367 3.633 9 O -0.445 6.445 10 N -0.355 5.355 11 C 0.004 3.996 12 C 0.026 3.974 13 H 0.088 0.912 14 C -0.172 4.172 15 C 0.017 3.983 16 N -0.355 5.355 17 C -0.335 4.335 18 H 0.102 0.898 19 C -0.259 4.259 20 N -0.600 5.600 21 Si 0.794 3.206 22 H -0.195 1.195 23 H -0.225 1.225 24 H -0.218 1.218 25 N -0.178 5.178 26 H 0.265 0.735 27 C -0.005 4.005 28 C -0.172 4.172 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.239 0.761 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.822 15.038 11.174 21.154 hybrid contribution -0.742 -1.081 -1.198 1.776 sum -10.564 13.957 9.976 20.147 Atomic orbital electron populations 1.20862 0.88707 1.03854 1.03411 1.20047 0.97454 0.91811 0.96309 1.20895 0.93628 0.98541 1.03718 1.20690 0.94366 0.96232 0.96976 1.18441 0.92656 0.94064 1.09998 1.21058 0.96225 0.93070 1.03748 1.20018 0.84061 0.93664 1.13112 1.17424 0.87347 0.82125 0.76405 1.90786 1.31985 1.69209 1.52521 1.45829 1.10904 1.05378 1.73350 1.21734 0.84999 0.91356 1.01467 1.22585 0.94626 0.91224 0.88920 0.91175 1.23482 0.95579 0.97726 1.00419 1.22058 0.90368 0.90059 0.95851 1.45989 1.55335 1.18175 1.16043 1.19166 1.19264 1.00259 0.94849 0.89836 1.25467 1.02732 0.97097 1.00648 1.69999 1.48506 1.12169 1.29304 0.85221 0.78290 0.77518 0.79602 1.19501 1.22542 1.21834 1.41933 1.03568 1.08695 1.63568 0.73547 1.18640 0.91573 0.87613 1.02692 1.20203 0.89110 0.99812 1.08038 0.89813 0.89881 0.91123 0.83069 0.83794 0.82465 0.76139 0.89578 0.93455 0.90156 0.88066 0.95843 0.94579 0.94508 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.99 71.24 0.71 -0.52 16 2 C -0.05 -0.95 5.88 -19.83 -0.12 -1.07 16 3 C -0.15 -2.51 9.61 22.02 0.21 -2.30 16 4 C -0.06 -1.30 10.06 22.30 0.22 -1.07 16 5 C -0.15 -3.85 6.16 -21.36 -0.13 -3.98 16 6 C -0.11 -3.29 10.53 22.55 0.24 -3.06 16 7 C 0.00 0.03 6.97 39.91 0.28 0.31 16 8 C 0.58 20.16 7.80 86.56 0.68 20.83 16 9 O -0.57 -22.89 16.84 -4.19 -0.07 -22.96 16 10 N -0.71 -23.13 5.33 -466.70 -2.49 -25.62 16 11 C 0.13 4.38 5.52 86.38 0.48 4.85 16 12 C 0.13 4.68 4.10 41.79 0.17 4.86 16 13 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 14 C -0.13 -4.43 8.03 30.93 0.25 -4.18 16 15 C 0.14 6.35 7.39 83.18 0.61 6.96 16 16 N -0.63 -29.63 3.65 -713.94 -2.61 -32.23 16 17 C -0.21 -10.88 10.55 84.03 0.89 -9.99 16 18 H 0.08 4.19 7.50 -2.91 -0.02 4.16 16 19 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 20 N -0.95 -56.47 11.51 21.65 0.25 -56.22 16 21 Si 0.96 45.57 29.55 68.60 2.03 47.60 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 N -0.57 -15.16 6.07 -177.19 -1.08 -16.24 16 26 H 0.43 9.71 8.12 -92.70 -0.75 8.96 16 27 C 0.11 2.72 7.25 39.14 0.28 3.00 16 28 C -0.15 -3.19 9.71 22.37 0.22 -2.98 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 31 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 32 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 35 H 0.40 12.29 7.43 -92.71 -0.69 11.60 16 36 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.70 8.12 -2.39 -0.02 2.68 16 39 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.04 1.86 7.12 -2.38 -0.02 1.84 16 42 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -70.84 363.18 1.09 -69.74 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.40 Total: 27.48 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 5.46 Total: 8.44 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -5.92 Total: -130.31 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.07 Total: -22.96 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -70.84 1.09 -69.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038562739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.020 kcal (2) G-P(sol) polarization free energy of solvation -70.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds