Wall clock time and date at job start Fri Apr 10 2020 22:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38948 * 119.68806 * 2 1 4 4 C 1.37664 * 120.64763 * 179.97438 * 3 2 1 5 5 C 1.39227 * 119.81123 * 359.97438 * 4 3 2 6 6 N 1.37475 * 133.18161 * 180.02562 * 5 4 3 7 7 H 0.97003 * 125.60738 * 359.95529 * 6 5 4 8 8 C 1.38144 * 108.79241 * 179.97438 * 6 5 4 9 9 C 1.47063 * 125.43504 * 180.02562 * 8 6 5 10 10 O 1.21643 * 119.99793 * 180.02562 * 9 8 6 11 11 N 1.34771 * 119.99479 * 0.02562 * 9 8 6 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.09007 * 112.96750 * 53.32018 * 13 12 11 15 15 C 1.53946 * 113.77378 * 184.99939 * 13 12 11 16 16 C 1.53945 * 86.29134 * 137.90550 * 15 13 12 17 17 N 1.47581 * 86.11961 * 336.39637 * 16 15 13 18 18 C 1.36929 * 134.49167 * 204.63911 * 17 16 15 19 19 H 1.08003 * 120.00188 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00102 * 0.02562 * 18 17 16 21 21 N 1.31623 * 119.99809 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99971 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47396 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47369 * 119.99643 * 22 20 18 25 25 H 1.48500 * 109.47186 * 239.99558 * 22 20 18 26 26 C 1.35868 * 109.13563 * 0.25984 * 8 6 5 27 27 C 1.40855 * 119.42701 * 0.02562 * 5 4 3 28 28 C 1.36433 * 119.69720 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47348 * 90.00581 * 1 2 3 30 30 H 1.09004 * 109.46451 * 210.00355 * 1 2 3 31 31 H 1.08998 * 109.47221 * 329.99488 * 1 2 3 32 32 H 1.08001 * 119.67602 * 359.95426 * 3 2 1 33 33 H 1.08002 * 120.09420 * 179.97438 * 4 3 2 34 34 H 0.96996 * 120.00772 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 36 36 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 37 37 H 1.09003 * 113.74151 * 252.25618 * 15 13 12 38 38 H 1.09006 * 113.73813 * 23.45283 * 15 13 12 39 39 H 1.08999 * 113.76275 * 90.69660 * 16 15 13 40 40 H 1.08993 * 113.76995 * 221.97658 * 16 15 13 41 41 H 0.96998 * 119.99367 * 180.02562 * 21 20 18 42 42 H 1.08006 * 126.13666 * 179.73993 * 26 8 6 43 43 H 1.07999 * 120.08427 * 0.04126 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2071 0.0000 4 6 3.5716 1.2301 0.0005 5 6 4.2839 0.0339 0.0016 6 7 5.6266 -0.2616 0.0028 7 1 6.3477 0.3873 0.0025 8 6 5.7801 -1.6345 0.0041 9 6 7.0657 -2.3486 0.0061 10 8 7.0857 -3.5649 0.0067 11 7 8.2215 -1.6555 0.0074 12 6 9.5022 -2.3669 0.0089 13 6 10.6485 -1.3536 0.0094 14 1 10.5694 -0.6224 0.8140 15 6 12.0431 -1.9942 -0.1118 16 6 12.3728 -0.8520 -1.0899 17 7 10.9171 -0.7585 -1.3141 18 6 10.1313 -0.3027 -2.3387 19 1 9.0554 -0.3461 -2.2547 20 6 10.7175 0.2141 -3.4860 21 7 12.0287 0.2666 -3.5887 22 14 9.6455 0.8365 -4.8834 23 1 8.2148 0.6683 -4.5226 24 1 9.9302 2.2741 -5.1232 25 1 9.9392 0.0615 -6.1156 26 6 4.5540 -2.2198 -0.0020 27 6 3.5839 -1.1884 0.0016 28 6 2.1829 -1.1851 0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6448 2.1364 -0.0007 33 1 4.0975 2.1735 0.0001 34 1 8.2055 -0.6857 0.0066 35 1 9.5693 -2.9925 0.8990 36 1 9.5713 -2.9926 -0.8810 37 1 12.6223 -1.9626 0.8111 38 1 12.0339 -2.9813 -0.5741 39 1 12.8007 0.0279 -0.6095 40 1 12.9345 -1.1731 -1.9670 41 1 12.4382 0.6281 -4.3902 42 1 4.3550 -3.2813 -0.0066 43 1 1.6394 -2.1184 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038592319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:33 Heat of formation + Delta-G solvation = 49.810680 kcal Electronic energy + Delta-G solvation = -25056.400584 eV Core-core repulsion = 21488.556525 eV Total energy + Delta-G solvation = -3567.844059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.62026 -40.67694 -39.57477 -38.17355 -35.73291 -34.25232 -33.27250 -32.39688 -30.39819 -29.89977 -29.22823 -27.23504 -25.32627 -25.03056 -23.49573 -22.78005 -21.76897 -21.27527 -20.80316 -19.65760 -18.57753 -18.03675 -17.19008 -17.15869 -16.48951 -16.26258 -15.96431 -15.77739 -15.43289 -15.36705 -14.89452 -14.79618 -14.69359 -14.53063 -14.13579 -13.86012 -13.63068 -13.33283 -13.01305 -12.89524 -12.74743 -12.61921 -12.53041 -12.32351 -12.05382 -11.91930 -11.81286 -11.61612 -11.50193 -11.11877 -10.92931 -10.87625 -10.22117 -9.12913 -8.91727 -8.76817 -7.90946 -5.22285 -0.27456 0.61492 1.05012 1.38708 1.41336 1.48491 1.82694 2.03302 2.23792 2.42690 2.88124 3.28355 3.34422 3.60517 3.71213 3.96392 4.05530 4.06451 4.07527 4.29491 4.31512 4.37628 4.47917 4.58714 4.67428 4.70492 4.80984 4.84861 4.93767 4.96449 5.04900 5.05809 5.11567 5.21366 5.28067 5.30926 5.42654 5.53943 5.58778 5.64315 5.72584 5.76132 5.95289 6.10653 6.29963 6.44295 6.91813 6.97021 7.61734 8.56530 9.26008 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.003477 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.602952 B = 8050.958788 C = 9353.563740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.138 4.138 5 C 0.095 3.905 6 N -0.571 5.571 7 H 0.426 0.574 8 C 0.005 3.995 9 C 0.580 3.420 10 O -0.565 6.565 11 N -0.705 5.705 12 C 0.131 3.869 13 C 0.132 3.868 14 H 0.073 0.927 15 C -0.130 4.130 16 C 0.149 3.851 17 N -0.630 5.630 18 C -0.212 4.212 19 H 0.082 0.918 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.963 3.037 23 H -0.271 1.271 24 H -0.291 1.291 25 H -0.298 1.298 26 C -0.118 4.118 27 C -0.136 4.136 28 C -0.075 4.075 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.141 0.859 34 H 0.404 0.596 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.024 0.976 40 H 0.038 0.962 41 H 0.246 0.754 42 H 0.156 0.844 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.698 1.290 11.717 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.121 4.121 3 C -0.104 4.104 4 C -0.158 4.158 5 C -0.015 4.015 6 N -0.176 5.176 7 H 0.266 0.734 8 C -0.105 4.105 9 C 0.367 3.633 10 O -0.444 6.444 11 N -0.355 5.355 12 C 0.006 3.994 13 C 0.026 3.974 14 H 0.091 0.909 15 C -0.168 4.168 16 C 0.024 3.976 17 N -0.356 5.356 18 C -0.341 4.341 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.793 3.207 23 H -0.195 1.195 24 H -0.218 1.218 25 H -0.226 1.226 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.094 4.094 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.239 0.761 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.174 0.826 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.543 0.609 11.427 21.789 hybrid contribution 0.559 1.175 -1.267 1.816 sum -17.984 1.784 10.160 20.732 Atomic orbital electron populations 1.20773 0.88933 1.03692 1.02905 1.19770 0.97691 0.92382 1.02253 1.21179 0.92551 0.98860 0.97768 1.20405 0.94523 0.94989 1.05916 1.18686 0.82860 0.96401 1.03543 1.41922 1.06729 1.05504 1.63460 0.73434 1.20016 0.94569 0.83156 1.12724 1.17419 0.82889 0.86575 0.76409 1.90788 1.87373 1.13853 1.52428 1.45817 1.05669 1.10580 1.73389 1.21679 0.81166 0.94997 1.01525 1.22694 0.93556 0.92984 0.88172 0.90930 1.23568 0.95028 0.98400 0.99853 1.22176 0.86120 0.93988 0.95315 1.46424 1.03199 1.72689 1.13336 1.19263 0.89687 1.31764 0.93347 0.90022 1.25464 0.96810 1.03234 1.00581 1.69994 1.09187 1.52670 1.28293 0.85226 0.78355 0.77317 0.79757 1.19540 1.21846 1.22593 1.21045 0.89554 0.99778 1.04203 1.18395 0.94550 0.92076 1.09062 1.20504 0.90722 0.99260 0.98899 0.90758 0.90986 0.90277 0.82722 0.84085 0.76086 0.89433 0.93472 0.88620 0.90267 0.95858 0.94316 0.94518 0.82610 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.99 71.24 0.71 -0.43 16 2 C -0.12 -2.06 5.84 -20.12 -0.12 -2.18 16 3 C -0.08 -1.40 9.66 22.30 0.22 -1.18 16 4 C -0.14 -2.73 10.08 22.37 0.23 -2.51 16 5 C 0.10 2.39 7.25 39.14 0.28 2.67 16 6 N -0.57 -14.65 6.07 -177.18 -1.08 -15.73 16 7 H 0.43 9.23 8.12 -92.71 -0.75 8.48 16 8 C 0.01 0.16 6.97 39.91 0.28 0.44 16 9 C 0.58 19.94 7.80 86.56 0.68 20.61 16 10 O -0.56 -22.78 16.84 -4.17 -0.07 -22.85 16 11 N -0.71 -22.73 5.52 -466.72 -2.58 -25.30 16 12 C 0.13 4.42 5.54 86.38 0.48 4.89 16 13 C 0.13 4.63 4.33 45.09 0.20 4.83 16 14 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 15 C -0.13 -4.32 7.86 31.25 0.25 -4.08 16 16 C 0.15 6.69 7.51 86.48 0.65 7.34 16 17 N -0.63 -29.69 3.57 -694.07 -2.48 -32.17 16 18 C -0.21 -11.17 10.51 84.04 0.88 -10.29 16 19 H 0.08 4.11 7.80 -2.91 -0.02 4.09 16 20 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 21 N -0.95 -56.66 11.39 21.65 0.25 -56.41 16 22 Si 0.96 45.73 29.55 68.60 2.03 47.75 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 26 C -0.12 -3.42 10.53 22.55 0.24 -3.19 16 27 C -0.14 -3.56 6.16 -21.36 -0.13 -3.69 16 28 C -0.08 -1.57 9.68 22.30 0.22 -1.35 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.68 8.07 -2.39 -0.02 0.66 16 31 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 32 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.40 11.90 7.53 -92.71 -0.70 11.20 16 35 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.08 2.64 8.10 -2.38 -0.02 2.62 16 39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.04 2.00 7.16 -2.39 -0.02 1.98 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 43 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -71.17 363.73 1.17 -70.00 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.41 Total: 26.15 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 5.51 Total: 8.56 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -5.89 Total: -129.62 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.07 Total: -22.85 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -71.17 1.17 -70.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038592319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.807 kcal (2) G-P(sol) polarization free energy of solvation -71.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds