Wall clock time and date at job start Fri Apr 10 2020 22:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38942 * 119.68994 * 2 1 4 4 C 1.37671 * 120.64516 * 180.02562 * 3 2 1 5 5 C 1.39226 * 119.81104 * 359.97438 * 4 3 2 6 6 N 1.37485 * 133.17712 * 180.34930 * 5 4 3 7 7 H 0.97000 * 125.60553 * 359.93454 * 6 5 4 8 8 C 1.38145 * 108.78552 * 180.02562 * 6 5 4 9 9 C 1.47058 * 125.42727 * 179.86829 * 8 6 5 10 10 O 1.21651 * 120.00000 * 179.68990 * 9 8 6 11 11 N 1.34775 * 120.00095 * 359.68724 * 9 8 6 12 12 C 1.46505 * 119.99894 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47137 * 179.97438 * 12 11 9 14 14 H 1.08998 * 112.73718 * 303.76024 * 13 12 11 15 15 C 1.53487 * 113.46697 * 172.94014 * 13 12 11 16 16 C 1.53502 * 83.34323 * 219.15440 * 15 13 12 17 17 N 1.47065 * 113.46330 * 74.50244 * 13 12 11 18 18 C 1.36934 * 136.06235 * 321.86970 * 17 13 12 19 19 H 1.07999 * 120.00193 * 359.97438 * 18 17 13 20 20 C 1.38816 * 120.00073 * 179.97438 * 18 17 13 21 21 N 1.31616 * 119.99941 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99877 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47021 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46964 * 119.99922 * 22 20 18 25 25 H 1.48502 * 109.46929 * 240.00131 * 22 20 18 26 26 C 1.35863 * 109.14107 * 359.59434 * 8 6 5 27 27 C 1.40849 * 119.43437 * 359.97438 * 5 4 3 28 28 C 1.36438 * 119.69411 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47147 * 270.02416 * 1 2 3 30 30 H 1.09003 * 109.47016 * 30.02908 * 1 2 3 31 31 H 1.09006 * 109.46712 * 150.02406 * 1 2 3 32 32 H 1.07995 * 119.67693 * 359.97211 * 3 2 1 33 33 H 1.08000 * 120.09075 * 180.02562 * 4 3 2 34 34 H 0.97000 * 120.00539 * 359.97438 * 11 9 8 35 35 H 1.08997 * 109.47105 * 60.00277 * 12 11 9 36 36 H 1.08999 * 109.47259 * 299.99592 * 12 11 9 37 37 H 1.08997 * 114.21045 * 332.73743 * 15 13 12 38 38 H 1.09000 * 114.21057 * 105.56674 * 15 13 12 39 39 H 1.09005 * 113.46519 * 271.28629 * 16 15 13 40 40 H 1.09005 * 113.46791 * 140.85026 * 16 15 13 41 41 H 0.97002 * 119.99782 * 180.02562 * 21 20 18 42 42 H 1.08004 * 126.13861 * 180.27928 * 26 8 6 43 43 H 1.07996 * 120.08312 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2070 0.0000 4 6 3.5717 1.2300 -0.0005 5 6 4.2839 0.0336 -0.0005 6 7 5.6266 -0.2618 0.0051 7 1 6.3476 0.3870 0.0096 8 6 5.7800 -1.6348 0.0013 9 6 7.0655 -2.3489 0.0026 10 8 7.0856 -3.5652 0.0046 11 7 8.2214 -1.6558 0.0014 12 6 9.5021 -2.3673 0.0021 13 6 10.6485 -1.3540 -0.0002 14 1 10.5938 -0.6578 -0.8371 15 6 12.0319 -1.9958 0.1734 16 6 12.2967 -0.7628 1.0486 17 7 10.8491 -0.6939 1.2986 18 6 10.0428 -0.2220 2.2998 19 1 8.9696 -0.3060 2.2137 20 6 10.6050 0.3645 3.4255 21 7 11.9130 0.4673 3.5302 22 14 9.5051 1.0089 4.7909 23 1 8.0830 0.7761 4.4324 24 1 9.8196 0.2987 6.0566 25 1 9.7383 2.4646 4.9689 26 6 4.5539 -2.2200 0.0024 27 6 3.5839 -1.1886 0.0006 28 6 2.1829 -1.1852 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6449 2.1363 -0.0005 33 1 4.0975 2.1733 -0.0001 34 1 8.2055 -0.6859 -0.0006 35 1 9.5700 -2.9940 -0.8871 36 1 9.5704 -2.9917 0.8929 37 1 12.0219 -2.9384 0.7206 38 1 12.6259 -2.0314 -0.7399 39 1 12.6821 0.0907 0.4909 40 1 12.8815 -0.9822 1.9420 41 1 12.3058 0.8768 4.3169 42 1 4.3548 -3.2815 0.0044 43 1 1.6392 -2.1184 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038592320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:37 Heat of formation + Delta-G solvation = 73.252957 kcal Electronic energy + Delta-G solvation = -25104.399381 eV Core-core repulsion = 21537.571856 eV Total energy + Delta-G solvation = -3566.827525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60832 -39.35486 -38.17473 -37.24463 -34.28543 -32.36575 -32.32297 -31.52151 -29.25537 -28.20033 -27.82896 -26.36163 -23.83450 -23.56175 -22.05173 -21.73114 -20.72827 -20.01689 -19.34190 -18.44895 -17.22705 -16.62258 -15.82120 -15.52894 -15.19538 -15.00067 -14.97725 -14.34030 -14.20659 -13.93178 -13.86395 -13.56508 -13.51781 -13.31380 -12.99184 -12.88906 -12.30890 -12.01064 -11.76926 -11.62738 -11.23955 -11.20797 -11.07693 -11.00366 -10.85674 -10.64789 -10.17937 -9.95996 -9.91975 -9.90016 -9.34960 -8.90979 -8.78289 -8.18678 -7.82382 -6.99735 -5.86583 -3.19750 0.72839 1.48820 2.12420 2.87728 3.29598 3.31901 3.36912 3.39033 3.48386 3.76377 4.34018 4.54030 4.74990 4.80376 4.96565 5.07943 5.11289 5.25006 5.29594 5.30161 5.45640 5.47436 5.53141 5.56236 5.65032 5.74207 5.81390 5.92047 5.95387 5.99888 6.22074 6.27944 6.31643 6.44941 6.51191 6.55916 6.59482 6.62040 6.72616 6.98535 7.13177 7.30031 7.30978 7.49017 7.69570 7.87783 8.30694 8.92616 9.60384 10.52870 11.30406 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.003550 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.292696 B = 7885.705240 C = 9232.974338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.126 4.126 5 C 0.108 3.892 6 N -0.575 5.575 7 H 0.420 0.580 8 C 0.029 3.971 9 C 0.577 3.423 10 O -0.531 6.531 11 N -0.709 5.709 12 C 0.121 3.879 13 C 0.126 3.874 14 H 0.048 0.952 15 C -0.160 4.160 16 C 0.151 3.849 17 N -0.602 5.602 18 C -0.218 4.218 19 H 0.078 0.922 20 C -0.005 4.005 21 N -0.915 5.915 22 Si 0.907 3.093 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.290 1.290 26 C -0.117 4.117 27 C -0.114 4.114 28 C -0.064 4.064 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.398 0.602 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.025 0.975 40 H 0.073 0.927 41 H 0.254 0.746 42 H 0.155 0.845 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.915 -0.058 -10.015 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.110 4.110 4 C -0.147 4.147 5 C -0.003 4.003 6 N -0.179 5.179 7 H 0.259 0.741 8 C -0.081 4.081 9 C 0.363 3.637 10 O -0.408 6.408 11 N -0.358 5.358 12 C -0.003 4.003 13 C 0.018 3.982 14 H 0.065 0.935 15 C -0.199 4.199 16 C 0.026 3.974 17 N -0.328 5.328 18 C -0.345 4.345 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.217 1.217 26 C -0.144 4.144 27 C -0.118 4.118 28 C -0.082 4.082 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.232 0.768 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.172 0.828 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.765 -0.728 -9.670 18.508 hybrid contribution -0.061 1.446 0.850 1.679 sum -15.826 0.719 -8.820 18.132 Atomic orbital electron populations 1.20712 0.91218 1.02444 1.02045 1.19348 0.95977 0.92831 1.03975 1.20723 0.92813 0.97577 0.99916 1.20082 0.93845 0.94987 1.05761 1.18335 0.83006 0.95582 1.03336 1.42026 1.06268 1.06235 1.63412 0.74138 1.20321 0.95470 0.82170 1.10172 1.17207 0.82253 0.86910 0.77334 1.90818 1.86826 1.12426 1.50755 1.45889 1.06005 1.10350 1.73540 1.21906 0.81150 0.95507 1.01750 1.22435 0.92477 0.92498 0.90781 0.93462 1.23658 0.96136 1.00112 1.00000 1.22038 0.87542 0.91539 0.96326 1.45683 1.02901 1.69683 1.14533 1.18835 0.88718 1.32375 0.94562 0.90386 1.24773 0.95885 1.01208 0.98303 1.69831 1.08554 1.48731 1.29066 0.86127 0.79386 0.78363 0.82356 1.20582 1.21515 1.21681 1.20852 0.89212 0.99265 1.05025 1.18174 0.93554 0.92277 1.07824 1.20225 0.91435 0.97791 0.98779 0.91558 0.91841 0.91789 0.85707 0.85895 0.76768 0.91818 0.90654 0.90082 0.92231 0.95688 0.90907 0.93615 0.82757 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 9.99 36.00 0.36 -0.41 16 2 C -0.12 -1.22 5.84 -105.01 -0.61 -1.83 16 3 C -0.09 -0.91 9.66 -39.53 -0.38 -1.29 16 4 C -0.13 -1.42 10.08 -39.42 -0.40 -1.81 16 5 C 0.11 1.43 7.25 -83.98 -0.61 0.82 16 6 N -0.58 -7.68 6.07 -7.36 -0.04 -7.72 16 7 H 0.42 4.84 8.12 -40.82 -0.33 4.51 16 8 C 0.03 0.44 6.97 -82.30 -0.57 -0.13 16 9 C 0.58 9.99 7.80 -12.68 -0.10 9.89 16 10 O -0.53 -10.63 16.84 5.23 0.09 -10.54 16 11 N -0.71 -11.79 5.33 -61.49 -0.33 -12.12 16 12 C 0.12 2.12 5.52 -4.04 -0.02 2.10 16 13 C 0.13 2.33 4.10 -72.41 -0.30 2.03 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 15 C -0.16 -2.81 8.03 -26.22 -0.21 -3.02 16 16 C 0.15 3.36 7.39 -8.51 -0.06 3.30 16 17 N -0.60 -14.22 3.65 -177.01 -0.65 -14.87 16 18 C -0.22 -5.69 10.55 -15.06 -0.16 -5.85 16 19 H 0.08 1.96 7.50 -52.49 -0.39 1.57 16 20 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 21 N -0.92 -26.42 11.51 55.49 0.64 -25.78 16 22 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C -0.12 -1.69 10.53 -39.16 -0.41 -2.11 16 27 C -0.11 -1.54 6.16 -106.93 -0.66 -2.20 16 28 C -0.06 -0.72 9.68 -39.53 -0.38 -1.11 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.40 6.19 7.43 -40.82 -0.30 5.89 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.15 2.07 8.06 -52.48 -0.42 1.65 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -32.09 363.17 -10.48 -42.57 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.02 Total: 8.10 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -4.62 Total: -1.84 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.38 Total: -60.49 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.09 -10.48 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038592320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.820 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds