Wall clock time and date at job start Fri Apr 10 2020 22:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38942 * 119.68994 * 2 1 4 4 C 1.37671 * 120.64516 * 180.02562 * 3 2 1 5 5 C 1.39226 * 119.81104 * 359.97438 * 4 3 2 6 6 N 1.37485 * 133.17712 * 180.34930 * 5 4 3 7 7 H 0.97000 * 125.60553 * 359.93454 * 6 5 4 8 8 C 1.38145 * 108.78552 * 180.02562 * 6 5 4 9 9 C 1.47058 * 125.42727 * 179.86829 * 8 6 5 10 10 O 1.21651 * 120.00000 * 179.68990 * 9 8 6 11 11 N 1.34775 * 120.00095 * 359.68724 * 9 8 6 12 12 C 1.46505 * 119.99894 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47137 * 179.97438 * 12 11 9 14 14 H 1.08998 * 112.73718 * 303.76024 * 13 12 11 15 15 C 1.53487 * 113.46697 * 172.94014 * 13 12 11 16 16 C 1.53502 * 83.34323 * 219.15440 * 15 13 12 17 17 N 1.47065 * 113.46330 * 74.50244 * 13 12 11 18 18 C 1.36934 * 136.06235 * 321.86970 * 17 13 12 19 19 H 1.07999 * 120.00193 * 359.97438 * 18 17 13 20 20 C 1.38816 * 120.00073 * 179.97438 * 18 17 13 21 21 N 1.31616 * 119.99941 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99877 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47021 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46964 * 119.99922 * 22 20 18 25 25 H 1.48502 * 109.46929 * 240.00131 * 22 20 18 26 26 C 1.35863 * 109.14107 * 359.59434 * 8 6 5 27 27 C 1.40849 * 119.43437 * 359.97438 * 5 4 3 28 28 C 1.36438 * 119.69411 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47147 * 270.02416 * 1 2 3 30 30 H 1.09003 * 109.47016 * 30.02908 * 1 2 3 31 31 H 1.09006 * 109.46712 * 150.02406 * 1 2 3 32 32 H 1.07995 * 119.67693 * 359.97211 * 3 2 1 33 33 H 1.08000 * 120.09075 * 180.02562 * 4 3 2 34 34 H 0.97000 * 120.00539 * 359.97438 * 11 9 8 35 35 H 1.08997 * 109.47105 * 60.00277 * 12 11 9 36 36 H 1.08999 * 109.47259 * 299.99592 * 12 11 9 37 37 H 1.08997 * 114.21045 * 332.73743 * 15 13 12 38 38 H 1.09000 * 114.21057 * 105.56674 * 15 13 12 39 39 H 1.09005 * 113.46519 * 271.28629 * 16 15 13 40 40 H 1.09005 * 113.46791 * 140.85026 * 16 15 13 41 41 H 0.97002 * 119.99782 * 180.02562 * 21 20 18 42 42 H 1.08004 * 126.13861 * 180.27928 * 26 8 6 43 43 H 1.07996 * 120.08312 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2070 0.0000 4 6 3.5717 1.2300 -0.0005 5 6 4.2839 0.0336 -0.0005 6 7 5.6266 -0.2618 0.0051 7 1 6.3476 0.3870 0.0096 8 6 5.7800 -1.6348 0.0013 9 6 7.0655 -2.3489 0.0026 10 8 7.0856 -3.5652 0.0046 11 7 8.2214 -1.6558 0.0014 12 6 9.5021 -2.3673 0.0021 13 6 10.6485 -1.3540 -0.0002 14 1 10.5938 -0.6578 -0.8371 15 6 12.0319 -1.9958 0.1734 16 6 12.2967 -0.7628 1.0486 17 7 10.8491 -0.6939 1.2986 18 6 10.0428 -0.2220 2.2998 19 1 8.9696 -0.3060 2.2137 20 6 10.6050 0.3645 3.4255 21 7 11.9130 0.4673 3.5302 22 14 9.5051 1.0089 4.7909 23 1 8.0830 0.7761 4.4324 24 1 9.8196 0.2987 6.0566 25 1 9.7383 2.4646 4.9689 26 6 4.5539 -2.2200 0.0024 27 6 3.5839 -1.1886 0.0006 28 6 2.1829 -1.1852 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6449 2.1363 -0.0005 33 1 4.0975 2.1733 -0.0001 34 1 8.2055 -0.6859 -0.0006 35 1 9.5700 -2.9940 -0.8871 36 1 9.5704 -2.9917 0.8929 37 1 12.0219 -2.9384 0.7206 38 1 12.6259 -2.0314 -0.7399 39 1 12.6821 0.0907 0.4909 40 1 12.8815 -0.9822 1.9420 41 1 12.3058 0.8768 4.3169 42 1 4.3548 -3.2815 0.0044 43 1 1.6392 -2.1184 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038592320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:37 Heat of formation + Delta-G solvation = 53.389783 kcal Electronic energy + Delta-G solvation = -25105.260713 eV Core-core repulsion = 21537.571856 eV Total energy + Delta-G solvation = -3567.688857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.62057 -40.72963 -39.72083 -38.17426 -35.72044 -34.29480 -33.27208 -32.39618 -30.39433 -29.95917 -29.19813 -27.22216 -25.43273 -24.97760 -23.39576 -22.77601 -21.76440 -21.29735 -20.89057 -19.65970 -18.58412 -18.04553 -17.19894 -17.14540 -16.48257 -16.26123 -15.96616 -15.78937 -15.41869 -15.35920 -14.87967 -14.78638 -14.68986 -14.52698 -14.13473 -13.86089 -13.65853 -13.38513 -13.03429 -12.89500 -12.75715 -12.63608 -12.53057 -12.34531 -12.05379 -11.91871 -11.81370 -11.67469 -11.49125 -11.00662 -10.92946 -10.88007 -10.20714 -9.12944 -8.92994 -8.76856 -7.92050 -5.23526 -0.27456 0.61472 1.05018 1.38852 1.41358 1.48647 1.83027 2.03869 2.23843 2.41991 2.88075 3.30182 3.38358 3.60872 3.71142 3.90941 4.06095 4.06546 4.07856 4.29474 4.30589 4.37726 4.47874 4.59557 4.65839 4.69844 4.80938 4.85196 4.93759 4.96436 5.04065 5.05606 5.11530 5.21461 5.27758 5.30024 5.42636 5.53981 5.55960 5.64397 5.71629 5.76052 5.93737 6.10663 6.29922 6.44146 6.89456 6.97017 7.59879 8.59745 9.25634 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.003550 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.292696 B = 7885.705240 C = 9232.974338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.120 4.120 3 C -0.084 4.084 4 C -0.138 4.138 5 C 0.095 3.905 6 N -0.571 5.571 7 H 0.426 0.574 8 C 0.005 3.995 9 C 0.579 3.421 10 O -0.565 6.565 11 N -0.705 5.705 12 C 0.129 3.871 13 C 0.133 3.867 14 H 0.071 0.929 15 C -0.134 4.134 16 C 0.142 3.858 17 N -0.630 5.630 18 C -0.207 4.207 19 H 0.084 0.916 20 C -0.067 4.067 21 N -0.951 5.951 22 Si 0.965 3.035 23 H -0.270 1.270 24 H -0.298 1.298 25 H -0.291 1.291 26 C -0.118 4.118 27 C -0.136 4.136 28 C -0.075 4.075 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.141 0.859 34 H 0.404 0.596 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.024 0.976 40 H 0.036 0.964 41 H 0.246 0.754 42 H 0.157 0.843 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.373 0.726 -11.424 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.159 4.159 5 C -0.015 4.015 6 N -0.177 5.177 7 H 0.265 0.735 8 C -0.105 4.105 9 C 0.367 3.633 10 O -0.445 6.445 11 N -0.354 5.354 12 C 0.004 3.996 13 C 0.027 3.973 14 H 0.089 0.911 15 C -0.172 4.172 16 C 0.016 3.984 17 N -0.356 5.356 18 C -0.335 4.335 19 H 0.102 0.898 20 C -0.261 4.261 21 N -0.600 5.600 22 Si 0.795 3.205 23 H -0.195 1.195 24 H -0.226 1.226 25 H -0.218 1.218 26 C -0.145 4.145 27 C -0.141 4.141 28 C -0.094 4.094 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.239 0.761 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.174 0.826 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.239 0.068 -11.118 21.360 hybrid contribution 0.569 1.215 1.207 1.805 sum -17.669 1.283 -9.911 20.300 Atomic orbital electron populations 1.20774 0.88915 1.03696 1.02909 1.19769 0.97698 0.92372 1.02251 1.21177 0.92528 0.98874 0.97770 1.20406 0.94541 0.94983 1.05936 1.18691 0.82851 0.96420 1.03557 1.41935 1.06740 1.05529 1.63448 0.73475 1.20022 0.94600 0.83141 1.12721 1.17426 0.82896 0.86582 0.76425 1.90787 1.87382 1.13821 1.52477 1.45828 1.05698 1.10587 1.73321 1.21737 0.81268 0.95091 1.01480 1.22584 0.93391 0.92420 0.88942 0.91146 1.23484 0.95566 0.97740 1.00435 1.22060 0.86604 0.93831 0.95863 1.45997 1.03626 1.69779 1.16189 1.19170 0.89395 1.30032 0.94919 0.89792 1.25484 0.96945 1.02921 1.00704 1.70001 1.09974 1.50681 1.29393 0.85207 0.78401 0.77394 0.79540 1.19463 1.22563 1.21810 1.21040 0.89525 0.99778 1.04207 1.18394 0.94556 0.92055 1.09052 1.20509 0.90705 0.99266 0.98886 0.90753 0.90282 0.90967 0.82725 0.84133 0.76111 0.89563 0.93449 0.90160 0.88055 0.95819 0.94585 0.94498 0.82571 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.99 71.24 0.71 -0.44 16 2 C -0.12 -2.08 5.84 -20.12 -0.12 -2.20 16 3 C -0.08 -1.42 9.66 22.30 0.22 -1.20 16 4 C -0.14 -2.79 10.08 22.37 0.23 -2.56 16 5 C 0.10 2.42 7.25 39.13 0.28 2.70 16 6 N -0.57 -14.94 6.07 -177.19 -1.08 -16.02 16 7 H 0.43 9.54 8.12 -92.71 -0.75 8.78 16 8 C 0.01 0.16 6.97 39.91 0.28 0.43 16 9 C 0.58 20.09 7.80 86.56 0.68 20.77 16 10 O -0.56 -22.86 16.84 -4.19 -0.07 -22.93 16 11 N -0.71 -23.02 5.33 -466.70 -2.49 -25.51 16 12 C 0.13 4.36 5.52 86.38 0.48 4.83 16 13 C 0.13 4.68 4.10 41.79 0.17 4.85 16 14 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 15 C -0.13 -4.43 8.03 30.93 0.25 -4.18 16 16 C 0.14 6.33 7.39 83.18 0.61 6.95 16 17 N -0.63 -29.62 3.65 -713.94 -2.61 -32.23 16 18 C -0.21 -10.85 10.55 84.03 0.89 -9.96 16 19 H 0.08 4.19 7.50 -2.91 -0.02 4.17 16 20 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 21 N -0.95 -56.53 11.51 21.65 0.25 -56.28 16 22 Si 0.96 45.50 29.55 68.60 2.03 47.52 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 C -0.12 -3.44 10.53 22.54 0.24 -3.20 16 27 C -0.14 -3.58 6.16 -21.36 -0.13 -3.71 16 28 C -0.08 -1.58 9.68 22.30 0.22 -1.36 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 31 H 0.07 0.69 8.07 -2.38 -0.02 0.67 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.40 12.21 7.43 -92.71 -0.69 11.52 16 35 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.08 2.70 8.12 -2.39 -0.02 2.68 16 38 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.04 1.86 7.12 -2.38 -0.02 1.84 16 41 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.16 4.28 8.06 -2.91 -0.02 4.25 16 43 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -70.84 363.17 1.10 -69.74 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.40 Total: 27.28 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 5.46 Total: 8.42 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -5.92 Total: -130.04 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.07 Total: -22.93 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -70.84 1.10 -69.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038592320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.131 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds