Wall clock time and date at job start Fri Apr 10 2020 22:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38750 * 119.84879 * 2 1 4 4 C 1.37769 * 120.63470 * 180.02562 * 3 2 1 5 5 C 1.39122 * 119.92680 * 359.95617 * 4 3 2 6 6 N 1.37967 * 133.18365 * 180.02562 * 5 4 3 7 7 H 0.97000 * 124.79071 * 0.04396 * 6 5 4 8 8 C 1.35478 * 110.42318 * 179.76562 * 6 5 4 9 9 C 1.36374 * 109.76943 * 0.41624 * 8 6 5 10 10 C 1.46905 * 126.77032 * 179.86674 * 9 8 6 11 11 O 1.21670 * 120.00344 * 179.68016 * 10 9 8 12 12 N 1.34782 * 119.99941 * 359.68147 * 10 9 8 13 13 C 1.46492 * 120.00055 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47144 * 180.02562 * 13 12 10 15 15 H 1.09003 * 112.77816 * 303.71965 * 14 13 12 16 16 C 1.53503 * 113.46807 * 172.94514 * 14 13 12 17 17 C 1.53498 * 83.34010 * 219.15221 * 16 14 13 18 18 N 1.47060 * 87.98968 * 26.06610 * 17 16 14 19 19 C 1.36938 * 136.05780 * 152.91951 * 18 17 16 20 20 H 1.08004 * 119.99749 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99984 * 359.94372 * 19 18 17 22 22 N 1.31618 * 119.99909 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99701 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47078 * 60.00293 * 23 21 19 25 25 H 1.48498 * 109.46962 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46870 * 300.00143 * 23 21 19 27 27 C 1.40386 * 119.36593 * 0.06524 * 5 4 3 28 28 C 1.37760 * 119.85180 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47511 * 269.98000 * 1 2 3 30 30 H 1.09004 * 109.46888 * 29.98113 * 1 2 3 31 31 H 1.09001 * 109.47253 * 149.97809 * 1 2 3 32 32 H 1.07999 * 119.68492 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.03372 * 179.97438 * 4 3 2 34 34 H 1.07995 * 125.11346 * 180.28083 * 8 6 5 35 35 H 0.96996 * 119.99838 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.47514 * 60.00098 * 13 12 10 37 37 H 1.09003 * 109.47543 * 300.00304 * 13 12 10 38 38 H 1.08999 * 114.20584 * 332.73578 * 16 14 13 39 39 H 1.08993 * 114.21026 * 105.56086 * 16 14 13 40 40 H 1.09006 * 113.46521 * 271.28087 * 17 16 14 41 41 H 1.08996 * 113.46987 * 140.85270 * 17 16 14 42 42 H 0.97003 * 119.99575 * 179.97438 * 22 21 19 43 43 H 1.08003 * 120.16074 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.2034 0.0000 4 6 3.5751 1.2223 -0.0005 5 6 4.2856 0.0262 -0.0001 6 7 5.6327 -0.2717 0.0000 7 1 6.3452 0.3866 0.0004 8 6 5.8202 -1.6134 0.0056 9 6 4.6130 -2.2478 0.0000 10 6 4.3820 -3.6986 0.0006 11 8 3.2458 -4.1338 0.0011 12 7 5.4287 -4.5477 0.0007 13 6 5.1984 -5.9944 0.0018 14 6 6.5428 -6.7249 0.0023 15 1 7.1799 -6.4368 -0.8339 16 6 6.4128 -8.2444 0.1764 17 6 7.6604 -8.0708 1.0536 18 7 7.2296 -6.6869 1.3022 19 6 7.3956 -5.7672 2.3031 20 1 6.9489 -4.7877 2.2160 21 6 8.1375 -6.0940 3.4299 22 7 8.6818 -7.2876 3.5360 23 14 8.3634 -4.8396 4.7955 24 1 7.0360 -4.4552 5.3391 25 1 9.1901 -5.4304 5.8785 26 1 9.0441 -3.6359 4.2543 27 6 3.5854 -1.1905 -0.0006 28 6 2.1926 -1.1948 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6499 2.1343 -0.0004 33 1 4.1028 2.1647 -0.0009 34 1 6.7810 -2.1064 0.0112 35 1 6.3345 -4.2008 0.0007 36 1 4.6334 -6.2731 -0.8876 37 1 4.6342 -6.2718 0.8923 38 1 5.5226 -8.5572 0.7223 39 1 6.5839 -8.8152 -0.7362 40 1 8.5952 -8.1412 0.4975 41 1 7.6530 -8.6949 1.9472 42 1 9.2006 -7.5158 4.3232 43 1 1.6528 -2.1303 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039058120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:44 Heat of formation + Delta-G solvation = 73.143977 kcal Electronic energy + Delta-G solvation = -25270.327321 eV Core-core repulsion = 21703.495070 eV Total energy + Delta-G solvation = -3566.832251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44860 -39.01818 -37.91616 -37.41331 -33.91748 -32.29605 -32.13390 -31.44142 -29.41077 -28.00366 -27.21760 -26.47423 -23.47497 -23.15189 -22.69753 -21.61931 -20.98281 -19.61770 -19.01668 -18.23291 -16.76413 -16.39852 -15.98206 -15.44822 -15.27643 -14.93251 -14.84998 -14.35513 -14.19830 -13.89200 -13.77872 -13.55869 -13.45309 -13.04164 -12.78959 -12.68681 -12.21140 -11.86183 -11.63660 -11.51627 -11.29642 -11.11068 -10.99028 -10.95895 -10.77521 -10.59042 -9.99946 -9.84436 -9.71202 -9.58816 -9.17415 -8.82285 -8.49131 -8.23371 -7.74552 -6.90932 -5.78263 -3.10645 0.97334 1.48195 2.10031 2.91283 3.35043 3.41749 3.42106 3.59808 3.69486 4.00209 4.41983 4.58688 4.69507 4.89345 4.95856 5.10865 5.19861 5.25991 5.39067 5.42153 5.54880 5.55807 5.57881 5.63005 5.71882 5.85607 5.93126 5.93886 6.06413 6.16415 6.28907 6.36287 6.42732 6.50217 6.61010 6.63610 6.67817 6.75777 6.98554 7.04822 7.22285 7.29427 7.39962 7.57027 7.96375 8.04523 8.73527 9.01587 9.68923 10.62280 11.38966 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003576 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.960932 B = 7829.098839 C = 8822.654897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.114 4.114 3 C -0.101 4.101 4 C -0.126 4.126 5 C 0.079 3.921 6 N -0.580 5.580 7 H 0.419 0.581 8 C 0.109 3.891 9 C -0.221 4.221 10 C 0.585 3.415 11 O -0.553 6.553 12 N -0.713 5.713 13 C 0.124 3.876 14 C 0.127 3.873 15 H 0.048 0.952 16 C -0.161 4.161 17 C 0.151 3.849 18 N -0.601 5.601 19 C -0.214 4.214 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.907 3.093 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.287 1.287 27 C -0.058 4.058 28 C -0.061 4.061 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.181 0.819 35 H 0.398 0.602 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.024 0.976 41 H 0.072 0.928 42 H 0.254 0.746 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 14.498 -10.084 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.115 4.115 3 C -0.120 4.120 4 C -0.146 4.146 5 C -0.026 4.026 6 N -0.182 5.182 7 H 0.256 0.744 8 C -0.024 4.024 9 C -0.232 4.232 10 C 0.373 3.627 11 O -0.433 6.433 12 N -0.362 5.362 13 C -0.001 4.001 14 C 0.020 3.980 15 H 0.065 0.935 16 C -0.200 4.200 17 C 0.026 3.974 18 N -0.327 5.327 19 C -0.341 4.341 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.738 3.262 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.214 1.214 27 C -0.062 4.062 28 C -0.080 4.080 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.198 0.802 35 H 0.233 0.767 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.569 14.353 -9.739 19.346 hybrid contribution 1.355 1.194 0.855 1.998 sum -7.214 15.547 -8.884 19.305 Atomic orbital electron populations 1.20708 0.91125 1.02491 1.02133 1.19706 0.96049 0.92615 1.03133 1.20655 0.92810 0.97522 1.01006 1.19948 0.93803 0.94550 1.06337 1.18253 0.83099 0.95393 1.05815 1.41506 1.06215 1.06873 1.63585 0.74392 1.22204 0.99401 0.82579 0.98177 1.20167 0.91968 0.92876 1.18170 1.17186 0.84882 0.84451 0.76221 1.90725 1.22386 1.78666 1.51492 1.45780 1.08717 1.07153 1.74588 1.21771 0.98525 0.78423 1.01334 1.22419 0.91352 0.93650 0.90623 0.93503 1.23660 1.01366 0.95085 0.99916 1.22026 0.91913 0.87227 0.96258 1.45657 1.59567 1.12969 1.14538 1.18803 1.27289 0.93550 0.94446 0.90239 1.24761 1.00248 0.97044 0.98287 1.69815 1.38303 1.19276 1.29143 0.86278 0.77726 0.80296 0.81929 1.21069 1.21548 1.21352 1.18739 0.93021 0.90635 1.03838 1.20581 0.91840 0.98158 0.97393 0.91459 0.91885 0.91550 0.85810 0.86225 0.80201 0.76739 0.92281 0.91109 0.90174 0.92358 0.95787 0.91014 0.93640 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.00 36.00 0.36 -0.63 16 2 C -0.11 -1.37 5.88 -104.61 -0.62 -1.98 16 3 C -0.10 -1.06 9.66 -39.56 -0.38 -1.44 16 4 C -0.13 -1.34 10.07 -39.42 -0.40 -1.74 16 5 C 0.08 1.01 7.26 -83.97 -0.61 0.40 16 6 N -0.58 -6.03 5.99 -10.48 -0.06 -6.09 16 7 H 0.42 2.79 8.96 -40.82 -0.37 2.43 16 8 C 0.11 1.32 11.33 -16.61 -0.19 1.13 16 9 C -0.22 -3.50 6.27 -103.31 -0.65 -4.14 16 10 C 0.58 10.76 7.80 -12.75 -0.10 10.66 16 11 O -0.55 -11.83 16.16 5.22 0.08 -11.75 16 12 N -0.71 -12.40 5.32 -61.55 -0.33 -12.73 16 13 C 0.12 2.28 5.52 -4.05 -0.02 2.26 16 14 C 0.13 2.43 4.10 -72.40 -0.30 2.13 16 15 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.16 -2.93 8.03 -26.21 -0.21 -3.14 16 17 C 0.15 3.43 7.39 -8.51 -0.06 3.37 16 18 N -0.60 -14.47 3.65 -177.00 -0.65 -15.12 16 19 C -0.21 -5.65 10.55 -15.06 -0.16 -5.81 16 20 H 0.08 2.01 7.50 -52.48 -0.39 1.61 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -26.78 11.51 55.49 0.64 -26.14 16 23 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.06 -0.89 6.27 -104.96 -0.66 -1.55 16 28 C -0.06 -0.91 9.49 -39.37 -0.37 -1.28 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.18 1.69 7.38 -52.49 -0.39 1.31 16 35 H 0.40 6.35 7.25 -40.82 -0.30 6.05 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.13 2.11 7.45 -52.48 -0.39 1.72 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -34.10 361.86 -10.32 -44.42 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.98 Total: 7.19 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -4.46 Total: -2.05 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.40 Total: -60.08 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.10 -10.32 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039058120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.565 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds