Wall clock time and date at job start Fri Apr 10 2020 22:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38750 * 119.84879 * 2 1 4 4 C 1.37769 * 120.63470 * 180.02562 * 3 2 1 5 5 C 1.39122 * 119.92680 * 359.95617 * 4 3 2 6 6 N 1.37967 * 133.18365 * 180.02562 * 5 4 3 7 7 H 0.97000 * 124.79071 * 0.04396 * 6 5 4 8 8 C 1.35478 * 110.42318 * 179.76562 * 6 5 4 9 9 C 1.36374 * 109.76943 * 0.41624 * 8 6 5 10 10 C 1.46905 * 126.77032 * 179.86674 * 9 8 6 11 11 O 1.21670 * 120.00344 * 179.68016 * 10 9 8 12 12 N 1.34782 * 119.99941 * 359.68147 * 10 9 8 13 13 C 1.46492 * 120.00055 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47144 * 180.02562 * 13 12 10 15 15 H 1.09003 * 112.77816 * 303.71965 * 14 13 12 16 16 C 1.53503 * 113.46807 * 172.94514 * 14 13 12 17 17 C 1.53498 * 83.34010 * 219.15221 * 16 14 13 18 18 N 1.47060 * 87.98968 * 26.06610 * 17 16 14 19 19 C 1.36938 * 136.05780 * 152.91951 * 18 17 16 20 20 H 1.08004 * 119.99749 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99984 * 359.94372 * 19 18 17 22 22 N 1.31618 * 119.99909 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99701 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47078 * 60.00293 * 23 21 19 25 25 H 1.48498 * 109.46962 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46870 * 300.00143 * 23 21 19 27 27 C 1.40386 * 119.36593 * 0.06524 * 5 4 3 28 28 C 1.37760 * 119.85180 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47511 * 269.98000 * 1 2 3 30 30 H 1.09004 * 109.46888 * 29.98113 * 1 2 3 31 31 H 1.09001 * 109.47253 * 149.97809 * 1 2 3 32 32 H 1.07999 * 119.68492 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.03372 * 179.97438 * 4 3 2 34 34 H 1.07995 * 125.11346 * 180.28083 * 8 6 5 35 35 H 0.96996 * 119.99838 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.47514 * 60.00098 * 13 12 10 37 37 H 1.09003 * 109.47543 * 300.00304 * 13 12 10 38 38 H 1.08999 * 114.20584 * 332.73578 * 16 14 13 39 39 H 1.08993 * 114.21026 * 105.56086 * 16 14 13 40 40 H 1.09006 * 113.46521 * 271.28087 * 17 16 14 41 41 H 1.08996 * 113.46987 * 140.85270 * 17 16 14 42 42 H 0.97003 * 119.99575 * 179.97438 * 22 21 19 43 43 H 1.08003 * 120.16074 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.2034 0.0000 4 6 3.5751 1.2223 -0.0005 5 6 4.2856 0.0262 -0.0001 6 7 5.6327 -0.2717 0.0000 7 1 6.3452 0.3866 0.0004 8 6 5.8202 -1.6134 0.0056 9 6 4.6130 -2.2478 0.0000 10 6 4.3820 -3.6986 0.0006 11 8 3.2458 -4.1338 0.0011 12 7 5.4287 -4.5477 0.0007 13 6 5.1984 -5.9944 0.0018 14 6 6.5428 -6.7249 0.0023 15 1 7.1799 -6.4368 -0.8339 16 6 6.4128 -8.2444 0.1764 17 6 7.6604 -8.0708 1.0536 18 7 7.2296 -6.6869 1.3022 19 6 7.3956 -5.7672 2.3031 20 1 6.9489 -4.7877 2.2160 21 6 8.1375 -6.0940 3.4299 22 7 8.6818 -7.2876 3.5360 23 14 8.3634 -4.8396 4.7955 24 1 7.0360 -4.4552 5.3391 25 1 9.1901 -5.4304 5.8785 26 1 9.0441 -3.6359 4.2543 27 6 3.5854 -1.1905 -0.0006 28 6 2.1926 -1.1948 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6499 2.1343 -0.0004 33 1 4.1028 2.1647 -0.0009 34 1 6.7810 -2.1064 0.0112 35 1 6.3345 -4.2008 0.0007 36 1 4.6334 -6.2731 -0.8876 37 1 4.6342 -6.2718 0.8923 38 1 5.5226 -8.5572 0.7223 39 1 6.5839 -8.8152 -0.7362 40 1 8.5952 -8.1412 0.4975 41 1 7.6530 -8.6949 1.9472 42 1 9.2006 -7.5158 4.3232 43 1 1.6528 -2.1303 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039058120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:43 Heat of formation + Delta-G solvation = 50.719258 kcal Electronic energy + Delta-G solvation = -25271.299730 eV Core-core repulsion = 21703.495070 eV Total energy + Delta-G solvation = -3567.804660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.41457 -40.51295 -39.49891 -38.33008 -35.42491 -34.22541 -33.14852 -32.33968 -30.55464 -29.88654 -28.61903 -27.33598 -25.37205 -24.48833 -23.61269 -23.03043 -21.96814 -21.17394 -20.49901 -19.24606 -18.50529 -17.45307 -17.25157 -17.06612 -16.67437 -16.21498 -15.93552 -15.75811 -15.40972 -15.34816 -15.07738 -14.70888 -14.65427 -14.26173 -14.21147 -13.63325 -13.56065 -13.29951 -12.96599 -12.92983 -12.69061 -12.57457 -12.49995 -12.33591 -12.14412 -11.90751 -11.83066 -11.62468 -11.21723 -10.84662 -10.74739 -10.72910 -9.97041 -9.15206 -8.86974 -8.72579 -7.85341 -5.16680 0.00475 0.54767 1.02458 1.43057 1.47670 1.52275 2.04129 2.32100 2.45553 2.49617 2.93052 3.37161 3.46796 3.67825 3.84472 3.89952 3.98138 4.07432 4.17500 4.30120 4.37255 4.42850 4.47420 4.63071 4.68722 4.70923 4.76870 4.85832 4.89148 4.92733 5.07496 5.11509 5.14413 5.20432 5.35330 5.40522 5.51150 5.55791 5.61842 5.63537 5.76759 5.77397 5.99292 6.13450 6.53689 6.69807 6.95961 7.36211 7.66580 8.66565 9.32332 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003576 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.960932 B = 7829.098839 C = 8822.654897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.110 4.110 3 C -0.104 4.104 4 C -0.114 4.114 5 C 0.068 3.932 6 N -0.559 5.559 7 H 0.440 0.560 8 C 0.140 3.860 9 C -0.274 4.274 10 C 0.581 3.419 11 O -0.597 6.597 12 N -0.708 5.708 13 C 0.133 3.867 14 C 0.136 3.864 15 H 0.073 0.927 16 C -0.137 4.137 17 C 0.144 3.856 18 N -0.629 5.629 19 C -0.206 4.206 20 H 0.088 0.912 21 C -0.070 4.070 22 N -0.955 5.955 23 Si 0.966 3.034 24 H -0.289 1.289 25 H -0.299 1.299 26 H -0.269 1.269 27 C -0.089 4.089 28 C -0.102 4.102 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.210 0.790 35 H 0.406 0.594 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.025 0.975 41 H 0.034 0.966 42 H 0.245 0.755 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 17.849 -11.432 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.123 4.123 4 C -0.134 4.134 5 C -0.038 4.038 6 N -0.162 5.162 7 H 0.282 0.718 8 C 0.005 3.995 9 C -0.284 4.284 10 C 0.372 3.628 11 O -0.480 6.480 12 N -0.358 5.358 13 C 0.008 3.992 14 C 0.029 3.971 15 H 0.091 0.909 16 C -0.175 4.175 17 C 0.018 3.982 18 N -0.355 5.355 19 C -0.334 4.334 20 H 0.106 0.894 21 C -0.263 4.263 22 N -0.604 5.604 23 Si 0.796 3.204 24 H -0.216 1.216 25 H -0.225 1.225 26 H -0.194 1.194 27 C -0.094 4.094 28 C -0.121 4.121 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.227 0.773 35 H 0.242 0.758 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.166 17.763 -11.128 22.495 hybrid contribution 1.169 0.214 1.201 1.690 sum -6.997 17.976 -9.927 21.694 Atomic orbital electron populations 1.20775 0.89474 1.03417 1.02807 1.20065 0.97439 0.92320 1.01281 1.21093 0.93174 0.98064 0.99970 1.20428 0.94011 0.95168 1.03827 1.18460 0.83752 0.95138 1.06400 1.41480 1.06198 1.06721 1.61776 0.71844 1.22533 0.99178 0.83122 0.94692 1.20057 0.94006 0.91564 1.22809 1.17628 0.84256 0.85774 0.75157 1.90687 1.24007 1.79614 1.53674 1.45689 1.09021 1.06606 1.74470 1.21564 0.97888 0.79242 1.00530 1.22557 0.91134 0.94381 0.88985 0.90935 1.23495 0.98641 0.95011 1.00398 1.22037 0.94057 0.86364 0.95744 1.45968 1.60109 1.13230 1.16152 1.19181 1.25330 0.94060 0.94824 0.89432 1.25508 1.01322 0.98736 1.00738 1.70004 1.39922 1.21085 1.29418 0.85330 0.77118 0.78812 0.79190 1.21567 1.22521 1.19430 1.19049 0.93507 0.91986 1.04812 1.20550 0.92267 0.98278 1.01015 0.90805 0.89312 0.92280 0.82267 0.82509 0.77312 0.75787 0.90608 0.94451 0.90542 0.88160 0.95712 0.94724 0.94635 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.00 71.23 0.71 -1.17 16 2 C -0.11 -2.56 5.88 -19.86 -0.12 -2.67 16 3 C -0.10 -1.87 9.66 22.28 0.22 -1.65 16 4 C -0.11 -2.03 10.07 22.37 0.23 -1.80 16 5 C 0.07 1.57 7.26 38.91 0.28 1.85 16 6 N -0.56 -9.88 5.99 -187.08 -1.12 -11.00 16 7 H 0.44 4.00 8.96 -92.71 -0.83 3.17 16 8 C 0.14 3.09 11.33 83.70 0.95 4.04 16 9 C -0.27 -8.68 6.27 -19.02 -0.12 -8.80 16 10 C 0.58 22.03 7.80 86.51 0.67 22.71 16 11 O -0.60 -27.09 16.16 -4.25 -0.07 -27.16 16 12 N -0.71 -24.46 5.32 -466.86 -2.48 -26.94 16 13 C 0.13 4.85 5.52 86.38 0.48 5.32 16 14 C 0.14 4.97 4.10 41.79 0.17 5.14 16 15 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 16 C -0.14 -4.75 8.03 30.93 0.25 -4.50 16 17 C 0.14 6.54 7.39 83.18 0.61 7.16 16 18 N -0.63 -30.15 3.65 -713.91 -2.61 -32.76 16 19 C -0.21 -10.88 10.55 84.03 0.89 -10.00 16 20 H 0.09 4.37 7.50 -2.91 -0.02 4.35 16 21 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 22 N -0.95 -57.22 11.51 21.65 0.25 -56.97 16 23 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 C -0.09 -2.79 6.27 -20.08 -0.13 -2.91 16 28 C -0.10 -3.19 9.49 22.41 0.21 -2.97 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 31 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 32 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.21 3.23 7.38 -2.91 -0.02 3.21 16 35 H 0.41 12.42 7.25 -92.71 -0.67 11.75 16 36 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 38 H 0.08 2.73 8.12 -2.39 -0.02 2.71 16 39 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.03 1.82 7.12 -2.39 -0.02 1.80 16 42 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.10 3.68 7.45 -2.91 -0.02 3.66 16 Total: -1.00 -78.86 361.86 1.31 -77.54 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.46 Total: 23.69 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 5.77 Total: 6.26 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -5.96 Total: -127.67 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.07 Total: -27.16 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -78.86 1.31 -77.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039058120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.261 kcal (2) G-P(sol) polarization free energy of solvation -78.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds