Wall clock time and date at job start Fri Apr 10 2020 22:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38936 * 119.67879 * 2 1 4 4 C 1.36437 * 120.61926 * 179.97438 * 3 2 1 5 5 C 1.40099 * 119.82822 * 0.02562 * 4 3 2 6 6 C 1.41586 * 133.37959 * 180.02562 * 5 4 3 7 7 C 1.35868 * 107.72757 * 179.97438 * 6 5 4 8 8 C 1.47060 * 125.42862 * 179.97438 * 7 6 5 9 9 O 1.21646 * 120.00245 * 11.33771 * 8 7 6 10 10 N 1.34773 * 119.99833 * 191.33324 * 8 7 6 11 11 C 1.46501 * 120.00349 * 359.52379 * 10 8 7 12 12 C 1.46503 * 120.00036 * 179.52190 * 10 8 7 13 13 C 1.53500 * 114.20512 * 120.00117 * 12 10 8 14 14 N 1.47070 * 87.98605 * 87.71656 * 13 12 10 15 15 C 1.36930 * 136.05687 * 207.08153 * 14 13 12 16 16 H 1.07995 * 120.00422 * 8.58573 * 15 14 13 17 17 C 1.38811 * 119.99736 * 188.57926 * 15 14 13 18 18 N 1.31619 * 119.99852 * 191.89103 * 17 15 14 19 19 Si 1.86801 * 120.00378 * 11.89666 * 17 15 14 20 20 H 1.48498 * 109.47165 * 270.00149 * 19 17 15 21 21 H 1.48506 * 109.46713 * 29.99300 * 19 17 15 22 22 H 1.48499 * 109.47332 * 149.99339 * 19 17 15 23 23 C 1.47067 * 87.88349 * 27.34176 * 14 13 12 24 24 N 1.38145 * 109.14018 * 0.24920 * 7 6 5 25 25 H 0.96996 * 125.60673 * 179.75460 * 24 7 6 26 26 C 1.37479 * 108.78667 * 359.59450 * 24 7 6 27 27 C 1.37668 * 119.67242 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47490 * 269.98548 * 1 2 3 29 29 H 1.09008 * 109.46600 * 29.98242 * 1 2 3 30 30 H 1.09000 * 109.47423 * 149.97492 * 1 2 3 31 31 H 1.07999 * 119.69116 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.08748 * 180.02562 * 4 3 2 33 33 H 1.08002 * 126.13686 * 0.04234 * 6 5 4 34 34 H 1.09002 * 109.47455 * 276.24023 * 11 10 8 35 35 H 1.09006 * 109.46969 * 36.23375 * 11 10 8 36 36 H 1.09000 * 109.47725 * 156.23249 * 11 10 8 37 37 H 1.08997 * 113.28186 * 346.93786 * 12 10 8 38 38 H 1.09003 * 113.46708 * 332.93582 * 13 12 10 39 39 H 1.08998 * 113.46766 * 202.49637 * 13 12 10 40 40 H 0.96999 * 120.00262 * 354.92334 * 18 17 15 41 41 H 1.09006 * 113.46791 * 87.43392 * 23 14 13 42 42 H 1.08994 * 113.47006 * 217.87520 * 23 14 13 43 43 H 1.07997 * 120.10175 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2071 0.0000 4 6 3.5591 1.2295 0.0005 5 6 4.2758 0.0257 0.0005 6 6 5.6575 -0.2834 0.0014 7 6 5.7787 -1.6367 0.0015 8 6 7.0482 -2.3789 0.0018 9 8 8.0946 -1.7942 0.2091 10 7 7.0524 -3.7070 -0.2275 11 6 5.7913 -4.4130 -0.4668 12 6 8.3181 -4.4446 -0.2376 13 6 8.4047 -5.5604 0.8130 14 7 7.7848 -6.4624 -0.1693 15 6 7.0126 -7.5921 -0.1207 16 1 6.6133 -7.9332 0.8230 17 6 6.7428 -8.2990 -1.2845 18 7 5.8212 -9.2387 -1.2851 19 14 7.6878 -7.9167 -2.8499 20 1 6.9710 -6.8664 -3.6168 21 1 9.0481 -7.4335 -2.5013 22 1 7.7957 -9.1461 -3.6758 23 6 8.3649 -5.6209 -1.2268 24 7 4.5192 -2.2042 -0.0050 25 1 4.3283 -3.1552 -0.0097 26 6 3.5808 -1.1995 -0.0001 27 6 2.1885 -1.1962 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6447 2.1364 0.0004 32 1 4.0851 2.1728 0.0009 33 1 6.4695 0.4287 0.0030 34 1 5.3294 -4.6656 0.4877 35 1 5.1188 -3.7724 -1.0375 36 1 5.9870 -5.3263 -1.0287 37 1 9.1940 -3.7969 -0.2749 38 1 7.7828 -5.3801 1.6899 39 1 9.4274 -5.8358 1.0704 40 1 5.3825 -9.4883 -0.4568 41 1 9.3772 -5.9122 -1.5071 42 1 7.7091 -5.4922 -2.0878 43 1 1.6448 -2.1293 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043494378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:54 Heat of formation + Delta-G solvation = 115.422230 kcal Electronic energy + Delta-G solvation = -25749.796777 eV Core-core repulsion = 22184.797849 eV Total energy + Delta-G solvation = -3564.998928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.78812 -39.96329 -38.20301 -37.23716 -34.60877 -32.78117 -32.38912 -30.77102 -29.71090 -28.38428 -27.06163 -26.32169 -25.42946 -23.97870 -22.56602 -21.47401 -21.01544 -20.20919 -19.08822 -17.74022 -17.30336 -17.16495 -16.09685 -15.85501 -15.54724 -15.14794 -14.70350 -14.47263 -14.14158 -14.03641 -13.88131 -13.73986 -13.53187 -13.31816 -13.02801 -12.94166 -12.69846 -12.33530 -12.11435 -11.84109 -11.59240 -11.49689 -11.26464 -10.98442 -10.97667 -10.69769 -10.34353 -10.00689 -9.89392 -9.70173 -9.31556 -8.89729 -8.43753 -8.28185 -7.78401 -7.32486 -6.42752 -3.38633 0.69010 1.50850 2.05103 2.81609 3.09790 3.29716 3.35735 3.38166 3.51592 3.75287 4.42963 4.45551 4.55110 4.65069 4.71927 4.95237 5.00048 5.05596 5.14880 5.24661 5.26897 5.29084 5.40214 5.48391 5.56680 5.62451 5.67051 5.70386 5.79809 5.85219 5.96232 6.07377 6.11926 6.17319 6.28119 6.35363 6.38021 6.46063 6.52943 6.60216 6.83716 6.96182 7.00018 7.30402 7.51175 8.10445 8.16273 8.83452 9.35027 10.22182 11.06037 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017569 B = 0.003588 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.293558 B = 7802.920013 C = 8862.715663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 C -0.150 4.150 4 C -0.059 4.059 5 C -0.123 4.123 6 C -0.114 4.114 7 C 0.027 3.973 8 C 0.580 3.420 9 O -0.531 6.531 10 N -0.575 5.575 11 C 0.057 3.943 12 C 0.097 3.903 13 C 0.106 3.894 14 N -0.624 5.624 15 C -0.305 4.305 16 H 0.082 0.918 17 C -0.022 4.022 18 N -0.930 5.930 19 Si 1.057 2.943 20 H -0.294 1.294 21 H -0.278 1.278 22 H -0.294 1.294 23 C 0.092 3.908 24 N -0.581 5.581 25 H 0.427 0.573 26 C 0.110 3.890 27 C -0.133 4.133 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.154 0.846 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.262 0.738 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 19.181 1.788 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.062 4.062 3 C -0.169 4.169 4 C -0.078 4.078 5 C -0.128 4.128 6 C -0.141 4.141 7 C -0.083 4.083 8 C 0.369 3.631 9 O -0.408 6.408 10 N -0.305 5.305 11 C -0.086 4.086 12 C -0.008 4.008 13 C -0.021 4.021 14 N -0.352 5.352 15 C -0.432 4.432 16 H 0.100 0.900 17 C -0.222 4.222 18 N -0.572 5.572 19 Si 0.889 3.111 20 H -0.222 1.222 21 H -0.205 1.205 22 H -0.222 1.222 23 C -0.034 4.034 24 N -0.194 5.194 25 H 0.275 0.725 26 C -0.001 4.001 27 C -0.153 4.153 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.172 0.828 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.248 18.626 0.311 19.648 hybrid contribution -0.170 -0.460 1.690 1.760 sum -6.418 18.166 2.001 19.370 Atomic orbital electron populations 1.20785 0.90997 1.02805 1.02335 1.19582 0.95750 0.92232 0.98638 1.20485 0.93915 0.97290 1.05200 1.20363 0.93635 0.96199 0.97564 1.18213 0.93027 0.92913 1.08612 1.20840 0.95343 0.93008 1.04902 1.20155 0.84198 0.93258 1.10655 1.17271 0.87100 0.81344 0.77429 1.90803 1.31516 1.68312 1.50148 1.47267 1.08052 1.06410 1.68807 1.22340 0.84592 0.99721 1.01904 1.22596 0.85661 0.92764 0.99738 1.22820 0.96900 0.88336 0.94068 1.46439 1.56946 1.30521 1.01342 1.20149 1.24141 1.01644 0.97230 0.90004 1.25758 0.99370 0.95856 1.01177 1.70904 1.24449 1.32717 1.29110 0.83878 0.76310 0.75346 0.75614 1.22154 1.20470 1.22176 1.23169 0.98188 0.88275 0.93788 1.43431 1.04043 1.09058 1.62899 0.72462 1.18428 0.90979 0.88125 1.02575 1.19921 0.89808 0.98437 1.07161 0.91128 0.91434 0.91533 0.86058 0.85829 0.82817 0.92230 0.91997 0.86335 0.87173 0.93417 0.93304 0.92773 0.91991 0.92721 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.99 36.01 0.36 -0.43 16 2 C -0.06 -0.60 5.88 -104.57 -0.61 -1.21 16 3 C -0.15 -1.44 9.61 -39.97 -0.38 -1.83 16 4 C -0.06 -0.63 10.06 -39.53 -0.40 -1.03 16 5 C -0.12 -1.60 6.16 -106.93 -0.66 -2.26 16 6 C -0.11 -1.58 10.55 -39.16 -0.41 -2.00 16 7 C 0.03 0.40 6.58 -82.29 -0.54 -0.14 16 8 C 0.58 9.79 7.65 -12.69 -0.10 9.69 16 9 O -0.53 -10.03 16.37 5.24 0.09 -9.95 16 10 N -0.58 -9.72 3.12 -174.95 -0.55 -10.27 16 11 C 0.06 0.93 8.07 59.85 0.48 1.41 16 12 C 0.10 1.71 4.67 -67.67 -0.32 1.39 16 13 C 0.11 2.01 8.31 -8.50 -0.07 1.94 16 14 N -0.62 -13.99 2.32 -184.61 -0.43 -14.41 16 15 C -0.31 -8.07 10.47 -15.06 -0.16 -8.22 16 16 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 17 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 18 N -0.93 -27.71 13.70 55.49 0.76 -26.95 16 19 Si 1.06 25.05 25.50 -169.99 -4.33 20.71 16 20 H -0.29 -6.66 7.03 56.52 0.40 -6.26 16 21 H -0.28 -6.10 5.38 56.52 0.30 -5.79 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C 0.09 1.81 4.60 -8.37 -0.04 1.77 16 24 N -0.58 -7.79 5.10 -7.35 -0.04 -7.83 16 25 H 0.43 5.26 4.85 -40.82 -0.20 5.06 16 26 C 0.11 1.43 7.25 -83.97 -0.61 0.82 16 27 C -0.13 -1.49 9.71 -39.42 -0.38 -1.87 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.40 8.08 -51.92 -0.42 -0.02 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 35 H 0.06 0.86 5.19 -51.93 -0.27 0.59 16 36 H 0.12 2.31 5.05 -51.93 -0.26 2.05 16 37 H 0.11 1.83 7.29 -51.93 -0.38 1.45 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.26 7.73 8.73 -40.82 -0.36 7.37 16 41 H 0.06 1.19 6.94 -51.93 -0.36 0.83 16 42 H 0.05 1.10 5.38 -51.93 -0.28 0.83 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -31.27 342.67 -8.89 -40.16 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.62 Total: 6.02 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -3.93 Total: -2.65 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.25 Total: -59.45 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.33 Total: 20.71 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.27 -8.89 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043494378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.584 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds